Wall clock time and date at job start Tue Mar 31 2020 06:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37806 * 120.08122 * 2 1 4 4 C 1.38756 * 120.65858 * 179.97438 * 3 2 1 5 5 C 1.36707 * 120.47000 * 359.97438 * 4 3 2 6 6 C 1.39522 * 119.80262 * 0.02562 * 5 4 3 7 7 C 1.47002 * 133.68904 * 179.97438 * 6 5 4 8 8 C 1.47984 * 126.74882 * 359.96565 * 7 6 5 9 9 C 1.39536 * 120.14260 * 114.76439 * 8 7 6 10 10 C 1.37972 * 119.85709 * 179.76465 * 9 8 7 11 11 C 1.38352 * 120.13958 * 0.50848 * 10 9 8 12 12 C 1.38360 * 120.28588 * 359.75000 * 11 10 9 13 13 C 1.37962 * 120.14308 * 359.97438 * 12 11 10 14 14 C 1.37886 * 106.49382 * 179.97438 * 7 6 5 15 15 C 1.47646 * 125.40212 * 179.97438 * 14 7 6 16 16 C 1.39670 * 120.15123 * 134.75069 * 15 14 7 17 17 C 1.37939 * 119.84023 * 179.72925 * 16 15 14 18 18 C 1.38370 * 120.15395 * 0.57276 * 17 16 15 19 19 C 1.38371 * 120.31075 * 359.69776 * 18 17 16 20 20 C 1.37936 * 120.15328 * 0.02562 * 19 18 17 21 21 N 1.37377 * 109.19603 * 359.97438 * 14 7 6 22 22 C 1.46506 * 124.92066 * 179.97438 * 21 14 7 23 23 C 1.50699 * 109.46928 * 90.00254 * 22 21 14 24 24 H 1.08003 * 119.99963 * 0.02562 * 23 22 21 25 25 C 1.37873 * 119.99865 * 179.97438 * 23 22 21 26 26 N 1.31514 * 120.00518 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99987 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47000 * 60.00482 * 27 25 23 29 29 H 1.48506 * 109.47330 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47185 * 300.00291 * 27 25 23 31 31 C 1.37848 * 110.15788 * 0.24333 * 21 14 7 32 32 H 1.09001 * 109.47115 * 89.99635 * 1 2 3 33 33 H 1.09000 * 109.47290 * 209.99553 * 1 2 3 34 34 H 1.09008 * 109.47124 * 329.99692 * 1 2 3 35 35 H 1.07999 * 119.67434 * 359.97438 * 3 2 1 36 36 H 1.08001 * 119.77033 * 180.02562 * 4 3 2 37 37 H 1.07999 * 120.09869 * 179.97438 * 5 4 3 38 38 H 1.08001 * 120.07378 * 0.02562 * 9 8 7 39 39 H 1.07994 * 119.93139 * 180.27524 * 10 9 8 40 40 H 1.07997 * 119.86143 * 179.76158 * 11 10 9 41 41 H 1.08004 * 119.93138 * 179.97438 * 12 11 10 42 42 H 1.07993 * 120.07612 * 180.02562 * 13 12 11 43 43 H 1.07995 * 120.08101 * 0.02562 * 16 15 14 44 44 H 1.08001 * 119.91916 * 180.30100 * 17 16 15 45 45 H 1.08001 * 119.84452 * 179.72290 * 18 17 16 46 46 H 1.08004 * 119.92362 * 180.02562 * 19 18 17 47 47 H 1.08007 * 120.07442 * 180.02562 * 20 19 18 48 48 H 1.09004 * 109.47073 * 210.00082 * 22 21 14 49 49 H 1.09000 * 109.47212 * 330.00165 * 22 21 14 50 50 H 0.96992 * 120.00316 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1925 0.0000 4 6 3.5852 1.2064 0.0005 5 6 4.2903 0.0352 0.0016 6 6 3.6107 -1.1833 0.0016 7 6 4.0444 -2.5879 0.0021 8 6 5.4386 -3.0840 0.0020 9 6 5.9295 -3.7947 1.0979 10 6 7.2288 -4.2587 1.0896 11 6 8.0477 -4.0116 0.0022 12 6 7.5687 -3.3029 -1.0853 13 6 6.2697 -2.8384 -1.0918 14 6 2.8967 -3.3520 0.0024 15 6 2.8517 -4.8278 0.0024 16 6 1.9806 -5.5031 0.8603 17 6 1.9398 -6.8818 0.8510 18 6 2.7676 -7.5960 0.0029 19 6 3.6370 -6.9336 -0.8457 20 6 3.6843 -5.5551 -0.8510 21 7 1.8017 -2.5224 0.0027 22 6 0.4078 -2.9734 0.0026 23 6 -0.0701 -3.1285 1.4234 24 1 0.5976 -2.9123 2.2443 25 6 -1.3599 -3.5454 1.6752 26 7 -2.1731 -3.8082 0.6756 27 14 -1.9521 -3.7384 3.4363 28 1 -1.8537 -2.4330 4.1375 29 1 -3.3651 -4.1954 3.4363 30 1 -1.1082 -4.7406 4.1353 31 6 2.2045 -1.2041 -0.0028 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5139 35 1 1.6538 2.1254 -0.0004 36 1 4.1120 2.1493 0.0009 37 1 5.3701 0.0531 0.0016 38 1 5.2925 -3.9848 1.9491 39 1 7.6086 -4.8127 1.9352 40 1 9.0652 -4.3737 0.0020 41 1 8.2131 -3.1130 -1.9310 42 1 5.8968 -2.2857 -1.9414 43 1 1.3372 -4.9470 1.5260 44 1 1.2633 -7.4052 1.5104 45 1 2.7347 -8.6755 0.0029 46 1 4.2800 -7.4973 -1.5054 47 1 4.3630 -5.0393 -1.5142 48 1 -0.2119 -2.2383 -0.5110 49 1 0.3361 -3.9319 -0.5116 50 1 -3.0804 -4.1018 0.8528 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005615536.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:14 Heat of formation + Delta-G solvation = 90.517959 kcal Electronic energy + Delta-G solvation = -32990.178534 eV Core-core repulsion = 29104.276846 eV Total energy + Delta-G solvation = -3885.901688 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.163 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.31726 -39.89757 -39.59886 -37.93329 -35.85879 -34.32707 -32.79813 -32.43299 -31.71661 -31.68405 -31.16112 -29.28605 -28.24687 -27.28609 -24.92868 -24.34139 -23.59001 -23.21829 -23.04139 -22.10039 -21.41849 -20.00524 -18.81422 -18.09609 -17.71516 -17.20588 -16.95154 -16.46391 -16.33828 -16.04928 -15.74509 -15.51793 -15.47100 -15.27672 -14.94018 -14.47839 -14.37730 -14.24592 -14.18479 -14.14136 -13.89233 -13.77152 -13.65441 -13.49800 -13.28542 -13.03944 -12.90407 -12.73276 -12.38276 -12.30572 -12.08689 -12.00847 -11.96051 -11.91106 -11.77752 -11.57756 -11.45897 -10.73243 -10.34419 -9.89281 -9.80622 -9.72916 -9.48982 -8.81289 -8.40840 -8.08833 -6.47946 -0.10193 0.46299 0.54840 0.55077 0.61701 0.86408 1.33250 1.34275 1.42263 1.78815 2.12525 2.33314 2.93272 2.95692 3.00461 3.06491 3.64985 3.86108 3.88525 4.06737 4.15823 4.16814 4.19973 4.22472 4.29355 4.33596 4.37179 4.44914 4.55460 4.58134 4.65866 4.67197 4.72938 4.76064 4.79662 4.86272 4.91291 4.95557 5.05221 5.08024 5.17152 5.20775 5.24606 5.27130 5.38956 5.53129 5.54387 5.61959 5.64298 5.67495 5.70643 5.74113 5.75368 5.83223 5.87052 5.98636 6.10119 6.13468 6.22550 6.39086 6.51007 6.68037 7.21252 8.72607 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.007673 B = 0.004768 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3648.445474 B = 5871.382989 C = 8540.644029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 C -0.114 4.114 4 C -0.140 4.140 5 C -0.088 4.088 6 C -0.110 4.110 7 C -0.160 4.160 8 C 0.003 3.997 9 C -0.122 4.122 10 C -0.118 4.118 11 C -0.124 4.124 12 C -0.115 4.115 13 C -0.121 4.121 14 C 0.123 3.877 15 C -0.047 4.047 16 C -0.117 4.117 17 C -0.133 4.133 18 C -0.108 4.108 19 C -0.122 4.122 20 C -0.094 4.094 21 N -0.456 5.456 22 C 0.251 3.749 23 C -0.533 4.533 24 H 0.045 0.955 25 C 0.035 3.965 26 N -0.911 5.911 27 Si 0.951 3.049 28 H -0.273 1.273 29 H -0.275 1.275 30 H -0.270 1.270 31 C 0.074 3.926 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.132 0.868 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.129 0.871 45 H 0.155 0.845 46 H 0.156 0.844 47 H 0.124 0.876 48 H 0.040 0.960 49 H 0.017 0.983 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.760 -0.690 -3.062 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.103 4.103 3 C -0.133 4.133 4 C -0.159 4.159 5 C -0.107 4.107 6 C -0.115 4.115 7 C -0.168 4.168 8 C 0.003 3.997 9 C -0.141 4.141 10 C -0.136 4.136 11 C -0.142 4.142 12 C -0.132 4.132 13 C -0.139 4.139 14 C 0.012 3.988 15 C -0.048 4.048 16 C -0.135 4.135 17 C -0.151 4.151 18 C -0.126 4.126 19 C -0.140 4.140 20 C -0.113 4.113 21 N -0.133 5.133 22 C 0.132 3.868 23 C -0.571 4.571 24 H 0.063 0.937 25 C -0.167 4.167 26 N -0.549 5.549 27 Si 0.776 3.224 28 H -0.198 1.198 29 H -0.200 1.200 30 H -0.195 1.195 31 C -0.034 4.034 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.149 0.851 38 H 0.114 0.886 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.147 0.853 45 H 0.172 0.828 46 H 0.174 0.826 47 H 0.142 0.858 48 H 0.058 0.942 49 H 0.035 0.965 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.175 -0.871 -3.115 16.496 hybrid contribution -1.500 -0.018 1.034 1.821 sum 14.676 -0.890 -2.082 14.849 Atomic orbital electron populations 1.20993 0.91453 1.03862 1.01755 1.19266 0.95940 0.90715 1.04391 1.20958 0.94736 0.96116 1.01472 1.20872 0.93621 0.98352 1.03019 1.20354 0.99776 0.90084 1.00469 1.19219 0.91396 0.93461 1.07411 1.19154 0.91198 0.90133 1.16282 1.18000 0.89973 0.97210 0.94537 1.21237 0.96464 0.99058 0.97325 1.21259 0.92947 0.99779 0.99637 1.21465 1.00666 0.98814 0.93205 1.21336 0.94783 0.97733 0.99380 1.21328 0.94450 1.00804 0.97304 1.19407 0.85805 0.90080 1.03461 1.18199 0.99140 0.88611 0.98802 1.21864 0.97139 0.95887 0.98607 1.21274 1.00143 0.93160 1.00553 1.21558 0.94925 1.01218 0.94925 1.21336 0.99661 0.93189 0.99767 1.21249 0.97793 0.94872 0.97403 1.44624 1.07086 1.03683 1.57866 1.19435 0.74724 0.95023 0.97663 1.21138 0.97608 1.47080 0.91271 0.93659 1.25528 0.96112 0.94103 1.00997 1.69993 1.07393 1.44800 1.32687 0.85703 0.77739 0.78886 0.80072 1.19795 1.19990 1.19470 1.18537 0.93973 0.85029 1.05824 0.92173 0.91391 0.90299 0.83595 0.82913 0.85059 0.88576 0.84469 0.83283 0.83467 0.86454 0.86495 0.85301 0.82755 0.82610 0.85832 0.94207 0.96512 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 8.75 71.24 0.62 -4.31 16 2 C -0.10 -4.03 5.90 -19.75 -0.12 -4.15 16 3 C -0.11 -3.64 9.67 22.29 0.22 -3.42 16 4 C -0.14 -4.06 9.98 22.03 0.22 -3.84 16 5 C -0.09 -2.91 10.05 22.22 0.22 -2.69 16 6 C -0.11 -4.44 6.34 -20.09 -0.13 -4.57 16 7 C -0.16 -6.35 5.71 -18.48 -0.11 -6.45 16 8 C 0.00 0.11 4.22 -20.06 -0.08 0.03 16 9 C -0.12 -3.73 9.79 22.52 0.22 -3.51 16 10 C -0.12 -2.74 10.03 22.23 0.22 -2.52 16 11 C -0.12 -2.38 10.04 22.33 0.22 -2.16 16 12 C -0.11 -2.35 10.03 22.23 0.22 -2.13 16 13 C -0.12 -3.24 9.79 22.52 0.22 -3.02 16 14 C 0.12 5.41 6.42 40.68 0.26 5.67 16 15 C -0.05 -1.89 5.24 -20.10 -0.11 -2.00 16 16 C -0.12 -4.90 8.52 22.54 0.19 -4.71 16 17 C -0.13 -4.57 10.03 22.23 0.22 -4.35 16 18 C -0.11 -2.96 10.04 22.33 0.22 -2.73 16 19 C -0.12 -3.30 10.03 22.23 0.22 -3.07 16 20 C -0.09 -3.15 9.00 22.54 0.20 -2.95 16 21 N -0.46 -21.78 2.78 -505.28 -1.40 -23.18 16 22 C 0.25 13.07 4.24 85.63 0.36 13.44 16 23 C -0.53 -28.70 5.94 25.60 0.15 -28.55 16 24 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 25 C 0.03 1.84 5.46 84.65 0.46 2.30 16 26 N -0.91 -50.49 13.29 21.45 0.28 -50.21 16 27 Si 0.95 42.40 29.54 68.60 2.03 44.42 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 29 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 30 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 31 C 0.07 3.30 6.72 39.00 0.26 3.57 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 3.24 4.52 -2.39 -0.01 3.22 16 34 H 0.08 2.66 8.09 -2.38 -0.02 2.64 16 35 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 36 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 38 H 0.10 3.25 8.06 -2.91 -0.02 3.23 16 39 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 43 H 0.12 5.71 5.36 -2.91 -0.02 5.70 16 44 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 45 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 46 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 47 H 0.12 3.93 7.43 -2.91 -0.02 3.91 16 48 H 0.04 2.17 5.59 -2.38 -0.01 2.16 16 49 H 0.02 0.95 7.17 -2.39 -0.02 0.94 16 50 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -64.78 409.91 6.28 -58.50 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: 0.95 Total: 36.59 kcal Atomic # 6 Polarization: -70.55 SS G_CDS: 4.42 Total: -66.13 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.12 Total: -73.39 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -64.78 6.28 -58.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005615536.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.019 kcal (2) G-P(sol) polarization free energy of solvation -64.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds