Wall clock time and date at job start Tue Mar 31 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35884 * 117.00527 * 2 1 4 4 C 1.38849 * 119.92225 * 180.02562 * 3 2 1 5 5 C 1.37882 * 120.07624 * 180.02562 * 4 3 2 6 6 C 1.39513 * 119.92412 * 359.97438 * 5 4 3 7 7 C 1.48105 * 120.07845 * 179.97438 * 6 5 4 8 8 C 1.36280 * 120.00348 * 115.00048 * 7 6 5 9 9 C 1.46615 * 120.00659 * 190.24622 * 8 7 6 10 10 C 1.40166 * 120.10395 * 43.64121 * 9 8 7 11 11 C 1.36593 * 119.88877 * 179.97438 * 10 9 8 12 12 C 1.39264 * 120.10648 * 359.97438 * 11 10 9 13 13 N 1.39119 * 119.88989 * 180.02562 * 12 11 10 14 14 C 1.46507 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.46502 * 119.99981 * 179.97438 * 13 12 11 16 16 C 1.50704 * 109.46945 * 89.99711 * 15 13 12 17 17 H 1.07993 * 120.00477 * 0.02562 * 16 15 13 18 18 C 1.37885 * 119.99650 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00121 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99945 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47075 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46981 * 119.99770 * 20 18 16 23 23 H 1.48498 * 109.46853 * 239.99962 * 20 18 16 24 24 C 1.39260 * 120.21927 * 0.02562 * 12 11 10 25 25 C 1.36597 * 120.10967 * 0.02562 * 24 12 11 26 26 C 1.46830 * 120.00100 * 294.99812 * 7 6 5 27 27 O 1.21590 * 120.00468 * 187.35192 * 26 7 6 28 28 O 1.34870 * 119.99854 * 7.35503 * 26 7 6 29 29 C 1.39509 * 119.84198 * 0.25179 * 6 5 4 30 30 C 1.37888 * 119.91331 * 359.51782 * 29 6 5 31 31 H 1.09001 * 109.46213 * 299.99669 * 1 2 3 32 32 H 1.09000 * 109.47158 * 59.99368 * 1 2 3 33 33 H 1.08992 * 109.47243 * 180.02562 * 1 2 3 34 34 H 1.07995 * 119.95580 * 359.97438 * 4 3 2 35 35 H 1.07997 * 120.03558 * 179.97438 * 5 4 3 36 36 H 1.08010 * 119.99698 * 10.24613 * 8 7 6 37 37 H 1.07999 * 120.05616 * 0.25807 * 10 9 8 38 38 H 1.08001 * 119.94509 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.46533 * 90.00316 * 14 13 12 40 40 H 1.09000 * 109.46874 * 210.00390 * 14 13 12 41 41 H 1.08999 * 109.46736 * 330.00591 * 14 13 12 42 42 H 1.09001 * 109.46753 * 209.99471 * 15 13 12 43 43 H 1.08995 * 109.47144 * 329.99534 * 15 13 12 44 44 H 0.96994 * 119.99909 * 179.97438 * 19 18 16 45 45 H 1.08003 * 119.95055 * 179.97438 * 24 12 11 46 46 H 1.08000 * 120.05786 * 179.97438 * 25 24 12 47 47 H 0.96705 * 116.99869 * 180.02562 * 28 26 7 48 48 H 1.07997 * 120.04224 * 179.74358 * 29 6 5 49 49 H 1.08008 * 119.95698 * 180.22679 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2107 0.0000 4 6 3.4327 1.2813 -0.0005 5 6 4.0621 2.5081 0.0000 6 6 3.3040 3.6793 0.0005 7 6 3.9765 4.9989 0.0017 8 6 3.8419 5.8332 -1.0674 9 6 4.6782 7.0330 -1.1710 10 6 6.0470 6.9634 -0.8771 11 6 6.8221 8.0837 -0.9756 12 6 6.2547 9.2936 -1.3677 13 7 7.0485 10.4317 -1.4670 14 6 8.4788 10.3565 -1.1587 15 6 6.4542 11.7056 -1.8798 16 6 5.9739 12.4536 -0.6628 17 1 6.0993 12.0235 0.3198 18 6 5.3754 13.6877 -0.8039 19 7 5.2242 14.2123 -2.0004 20 14 4.7808 14.6153 0.7045 21 1 5.0682 13.8157 1.9225 22 1 5.4842 15.9202 0.7923 23 1 3.3180 14.8476 0.5979 24 6 4.8953 9.3678 -1.6607 25 6 4.1116 8.2532 -1.5642 26 6 4.7882 5.4082 1.1547 27 8 5.2297 6.5394 1.2166 28 8 5.0441 4.5294 2.1452 29 6 1.9109 3.6045 0.0059 30 6 1.2883 2.3741 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 4.0189 0.3743 -0.0005 35 1 5.1407 2.5623 0.0000 36 1 3.1191 5.6107 -1.8385 37 1 6.4889 6.0245 -0.5778 38 1 7.8768 8.0312 -0.7489 39 1 9.0333 10.1128 -2.0649 40 1 8.8182 11.3176 -0.7724 41 1 8.6488 9.5832 -0.4096 42 1 7.2016 12.3029 -2.4019 43 1 5.6120 11.5149 -2.5449 44 1 4.8028 15.0803 -2.0996 45 1 4.4597 10.3084 -1.9640 46 1 3.0574 8.3118 -1.7912 47 1 5.5828 4.8449 2.8838 48 1 1.3209 4.5090 0.0105 49 1 0.2099 2.3154 0.0009 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005737916.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:51 Heat of formation + Delta-G solvation = -37.779944 kcal Electronic energy + Delta-G solvation = -31720.168176 eV Core-core repulsion = 27385.561059 eV Total energy + Delta-G solvation = -4334.607116 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.51240 -39.99330 -38.84534 -37.74231 -36.39453 -35.43169 -33.69358 -32.67945 -31.30357 -30.62604 -30.31656 -28.36049 -27.86715 -27.17899 -25.42197 -24.23578 -22.85488 -22.68681 -22.08457 -21.47916 -20.16506 -19.08739 -18.46506 -17.86588 -17.07571 -16.55707 -16.37249 -16.23906 -16.02185 -15.49037 -15.09106 -14.96539 -14.54565 -14.49186 -14.12922 -13.93497 -13.73031 -13.63885 -13.60590 -13.23316 -12.96954 -12.84530 -12.74321 -12.41763 -12.25726 -12.19350 -11.85349 -11.47888 -11.43361 -11.35000 -11.21835 -11.12900 -10.97166 -10.96406 -10.71998 -10.39349 -10.27661 -10.04683 -9.75180 -9.53029 -9.19630 -8.59959 -8.53803 -8.22600 -8.12082 -6.42915 -6.03529 -4.20492 0.75974 1.18335 1.24178 2.19901 2.46054 2.99000 3.09910 3.23993 3.24880 3.32189 3.38097 3.64305 4.08151 4.38816 4.52044 4.56440 4.63334 4.66570 4.79995 4.80758 5.09995 5.16917 5.18560 5.20143 5.25988 5.33088 5.44357 5.48885 5.52551 5.75446 5.83246 5.89742 5.96109 6.00454 6.05541 6.11365 6.23397 6.29864 6.36829 6.42285 6.47213 6.53846 6.58086 6.66432 6.93577 7.03971 7.12940 7.13706 7.20488 7.31445 7.54840 7.78445 8.10446 8.13847 8.18756 8.40691 8.88624 9.46457 10.92480 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.001898 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.708019 B =14751.469014 C =15274.547533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.151 4.151 5 C -0.055 4.055 6 C -0.062 4.062 7 C -0.173 4.173 8 C 0.058 3.942 9 C -0.195 4.195 10 C 0.015 3.985 11 C -0.232 4.232 12 C 0.267 3.733 13 N -0.604 5.604 14 C 0.094 3.906 15 C 0.245 3.755 16 C -0.531 4.531 17 H 0.061 0.939 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.206 4.206 25 C -0.033 4.033 26 C 0.515 3.485 27 O -0.488 6.488 28 O -0.520 6.520 29 C -0.068 4.068 30 C -0.208 4.208 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.032 0.968 43 H 0.039 0.961 44 H 0.264 0.736 45 H 0.134 0.866 46 H 0.113 0.887 47 H 0.405 0.595 48 H 0.127 0.873 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.268 -25.915 2.459 26.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.170 4.170 5 C -0.073 4.073 6 C -0.063 4.063 7 C -0.175 4.175 8 C 0.039 3.961 9 C -0.198 4.198 10 C -0.005 4.005 11 C -0.255 4.255 12 C 0.156 3.844 13 N -0.307 5.307 14 C -0.050 4.050 15 C 0.125 3.875 16 C -0.570 4.570 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.228 4.228 25 C -0.052 4.052 26 C 0.360 3.640 27 O -0.377 6.377 28 O -0.331 6.331 29 C -0.087 4.087 30 C -0.227 4.227 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.151 0.849 46 H 0.132 0.868 47 H 0.262 0.738 48 H 0.145 0.855 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.204 -25.517 2.026 26.121 hybrid contribution -0.311 1.038 1.495 1.846 sum -5.515 -24.479 3.520 25.339 Atomic orbital electron populations 1.23045 0.78470 1.03829 1.01427 1.86054 1.21336 1.27179 1.88803 1.19103 0.92365 0.84024 0.96786 1.20325 0.91226 0.98540 1.06867 1.20997 0.99830 0.90436 0.96043 1.18442 0.92563 0.91600 1.03674 1.19361 1.06779 0.96793 0.94562 1.22591 0.91271 0.89718 0.92483 1.18295 0.93670 0.93274 1.14575 1.20302 0.92270 0.96732 0.91155 1.20176 0.99955 0.92360 1.12976 1.18138 0.90699 0.86370 0.89152 1.47144 1.06760 1.08417 1.68353 1.21553 0.81999 1.02292 0.99181 1.19378 0.94154 0.78303 0.95629 1.21599 1.39025 1.02705 0.93698 0.92108 1.24958 0.95667 0.97260 0.96161 1.69935 1.43732 1.18033 1.21632 0.86459 0.78547 0.79561 0.83039 1.19692 1.20936 1.20795 1.20495 0.92479 0.99795 1.10038 1.20602 0.98381 0.91429 0.94836 1.20881 0.77951 0.82777 0.82425 1.91093 1.48627 1.20173 1.77782 1.84666 1.68985 1.46318 1.33137 1.21096 0.93564 0.97119 0.96881 1.21134 0.99914 0.92207 1.09410 0.92646 0.92606 0.88353 0.85224 0.85298 0.84896 0.88259 0.86856 0.94238 0.91215 0.92404 0.94978 0.94330 0.92668 0.84857 0.86850 0.73766 0.85535 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.98 10.49 -19.38 -0.20 -3.19 16 3 C 0.12 1.22 6.69 -39.13 -0.26 0.96 16 4 C -0.15 -1.50 9.97 -39.49 -0.39 -1.89 16 5 C -0.05 -0.57 9.42 -39.24 -0.37 -0.94 16 6 C -0.06 -0.69 5.05 -104.90 -0.53 -1.22 16 7 C -0.17 -2.17 5.28 -103.08 -0.54 -2.72 16 8 C 0.06 0.74 9.44 -36.91 -0.35 0.39 16 9 C -0.20 -3.13 4.59 -105.07 -0.48 -3.61 16 10 C 0.01 0.24 6.52 -39.45 -0.26 -0.01 16 11 C -0.23 -4.21 9.14 -39.79 -0.36 -4.57 16 12 C 0.27 5.47 6.56 -83.79 -0.55 4.92 16 13 N -0.60 -12.94 2.98 -180.95 -0.54 -13.48 16 14 C 0.09 1.64 10.17 59.85 0.61 2.25 16 15 C 0.24 6.09 4.90 -5.19 -0.03 6.07 16 16 C -0.53 -14.53 9.39 -34.44 -0.32 -14.85 16 17 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 20 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C -0.21 -4.18 9.14 -39.79 -0.36 -4.54 16 25 C -0.03 -0.57 9.75 -39.45 -0.38 -0.96 16 26 C 0.51 7.12 7.27 34.21 0.25 7.37 16 27 O -0.49 -8.43 12.95 -19.33 -0.25 -8.68 16 28 O -0.52 -5.71 12.72 -40.96 -0.52 -6.23 16 29 C -0.07 -0.69 9.72 -39.24 -0.38 -1.07 16 30 C -0.21 -1.92 9.02 -39.49 -0.36 -2.28 16 31 H 0.05 0.27 7.65 -51.93 -0.40 -0.13 16 32 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.10 1.50 6.99 -52.49 -0.37 1.13 16 38 H 0.11 1.87 6.11 -52.49 -0.32 1.55 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 41 H 0.06 0.92 6.17 -51.93 -0.32 0.60 16 42 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 43 H 0.04 1.01 6.17 -51.93 -0.32 0.69 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 45 H 0.13 2.95 6.11 -52.48 -0.32 2.63 16 46 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.41 2.87 9.11 45.56 0.42 3.28 16 48 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 49 H 0.13 0.89 6.28 -52.48 -0.33 0.56 16 LS Contribution 411.65 15.07 6.20 6.20 Total: -1.00 -32.98 411.65 -9.48 -42.46 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.70 Total: 5.20 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -4.18 Total: -13.95 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.20 Total: -38.20 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.97 Total: -18.10 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.98 -9.48 -42.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005737916.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.680 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds