Wall clock time and date at job start Tue Mar 31 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00302 * 2 1 4 4 C 1.50704 * 109.47192 * 270.00530 * 3 2 1 5 5 H 1.08001 * 120.00028 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99961 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99632 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00038 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46989 * 90.00019 * 8 6 4 10 10 H 1.48499 * 109.46990 * 210.00105 * 8 6 4 11 11 H 1.48498 * 109.47056 * 330.00009 * 8 6 4 12 12 C 1.34784 * 119.99737 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99607 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99857 * 359.97438 * 12 2 1 15 15 O 1.45202 * 109.46972 * 180.02562 * 14 12 2 16 16 C 1.34227 * 117.00265 * 179.97438 * 15 14 12 17 17 O 1.20830 * 119.99445 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00302 * 180.02562 * 16 15 14 19 19 N 1.46494 * 109.47466 * 179.97438 * 18 16 15 20 20 C 1.34009 * 124.22468 * 89.96979 * 19 18 16 21 21 O 1.21541 * 123.81505 * 359.94235 * 20 19 18 22 22 N 1.34980 * 112.36947 * 179.97438 * 20 19 18 23 23 C 1.45939 * 105.99523 * 0.02562 * 22 20 19 24 24 C 1.53571 * 112.01135 * 238.41429 * 23 22 20 25 25 C 1.54499 * 104.08611 * 275.02034 * 24 23 22 26 26 C 1.53977 * 106.66178 * 337.67240 * 25 24 23 27 27 C 1.53571 * 112.01079 * 121.58181 * 23 22 20 28 28 C 1.35208 * 124.22026 * 269.95417 * 19 18 16 29 29 O 1.21235 * 127.46858 * 0.03162 * 28 19 18 30 30 H 1.09001 * 109.46694 * 269.99626 * 1 2 3 31 31 H 1.09002 * 109.47332 * 29.99101 * 1 2 3 32 32 H 1.08996 * 109.47707 * 149.99622 * 1 2 3 33 33 H 1.09001 * 109.47022 * 30.00224 * 3 2 1 34 34 H 1.08997 * 109.47425 * 150.00553 * 3 2 1 35 35 H 0.97001 * 119.99873 * 180.02562 * 7 6 4 36 36 H 1.08995 * 109.47095 * 60.00270 * 14 12 2 37 37 H 1.09004 * 109.47061 * 299.99564 * 14 12 2 38 38 H 1.09000 * 109.47200 * 59.99252 * 18 16 15 39 39 H 1.09000 * 109.46739 * 299.99853 * 18 16 15 40 40 H 0.97002 * 127.00288 * 180.02562 * 22 20 19 41 41 H 1.08999 * 110.50635 * 156.36822 * 24 23 22 42 42 H 1.08999 * 110.50963 * 33.67130 * 24 23 22 43 43 H 1.08999 * 110.02012 * 218.37913 * 25 24 23 44 44 H 1.08993 * 110.02517 * 96.97182 * 25 24 23 45 45 H 1.08997 * 110.01708 * 119.30557 * 26 25 24 46 46 H 1.09001 * 110.01783 * 240.70100 * 26 25 24 47 47 H 1.09000 * 110.51149 * 326.32653 * 27 23 22 48 48 H 1.09003 * 110.50881 * 203.63378 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2418 6 6 3.1260 2.8780 -1.6728 7 7 3.5534 3.6180 -0.6731 8 14 3.4379 3.4170 -3.4339 9 1 2.3077 4.2593 -3.9013 10 1 4.6979 4.2004 -3.4960 11 1 3.5560 2.2197 -4.3044 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 8 2.3288 -3.5760 -0.0005 16 6 1.8158 -4.8164 0.0000 17 8 0.6179 -4.9746 0.0009 18 6 2.7337 -6.0115 0.0006 19 7 1.9358 -7.2401 0.0018 20 6 1.5245 -7.8727 -1.1057 21 8 1.7704 -7.4915 -2.2333 22 7 0.8057 -8.9808 -0.8274 23 6 0.7492 -9.0684 0.6283 24 6 1.3396 -10.3870 1.1489 25 6 0.1637 -11.3855 1.0626 26 6 -1.1280 -10.5474 1.0630 27 6 -0.6954 -9.0668 1.1493 28 6 1.5228 -7.8775 1.1204 29 8 1.7309 -7.5574 2.2710 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8901 -0.5137 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6085 2.0283 0.5139 34 1 3.1500 1.1383 0.5137 35 1 4.0296 4.4443 -0.8503 36 1 0.7583 -2.5298 -0.8903 37 1 0.7590 -2.5302 0.8898 38 1 3.3625 -5.9862 0.8906 39 1 3.3625 -5.9870 -0.8893 40 1 0.4078 -9.5940 -1.4650 41 1 1.6710 -10.2757 2.1813 42 1 2.1644 -10.7128 0.5151 43 1 0.1762 -12.0521 1.9248 44 1 0.2325 -11.9644 0.1417 45 1 -1.6852 -10.7203 0.1422 46 1 -1.7415 -10.8080 1.9254 47 1 -1.3292 -8.4462 0.5159 48 1 -0.7286 -8.7189 2.1818 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005874263.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:18 Heat of formation + Delta-G solvation = -151.109196 kcal Electronic energy + Delta-G solvation = -33427.980160 eV Core-core repulsion = 28677.609455 eV Total energy + Delta-G solvation = -4750.370705 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 367.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.18075 -40.63724 -39.18121 -38.91157 -38.35491 -36.59298 -36.04402 -34.86919 -34.27554 -32.67179 -30.18966 -29.58579 -29.12706 -28.56823 -27.16253 -25.67574 -24.12029 -23.16623 -22.36227 -21.19934 -21.16821 -20.66955 -18.88345 -18.44061 -18.30328 -17.22567 -16.96092 -16.79635 -16.59103 -16.47855 -16.42469 -15.85712 -15.68913 -15.64040 -15.17722 -15.03341 -14.78845 -14.58150 -14.23164 -14.10080 -13.54495 -13.18250 -13.06506 -12.69594 -12.48139 -12.38909 -12.31358 -12.24258 -12.10490 -11.94087 -11.89840 -11.85639 -11.31241 -11.23653 -11.13705 -11.09660 -10.95123 -10.75220 -10.61524 -10.60679 -10.26381 -10.18012 -9.91255 -9.66612 -9.03919 -8.45656 -7.75814 -6.06657 -4.11675 1.12841 1.47918 1.94027 2.25065 2.61571 2.73811 3.21843 3.30073 3.36917 3.37414 3.42288 3.78200 3.81072 3.82730 4.36115 4.38749 4.42332 4.52799 4.57936 4.69654 4.75055 4.80109 4.87466 4.89750 4.92235 5.03148 5.14985 5.16173 5.19626 5.28175 5.28501 5.36426 5.47316 5.49820 5.58045 5.66191 5.85143 6.14101 6.19252 6.31208 6.52583 6.87533 6.95306 7.36974 7.42040 7.49855 7.67163 7.89147 8.18659 8.25501 8.81916 8.96867 9.53398 11.01492 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.001771 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.200815 B =15808.129093 C =16145.573629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.597 5.597 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.506 3.494 13 O -0.518 6.518 14 C 0.052 3.948 15 O -0.322 6.322 16 C 0.450 3.550 17 O -0.503 6.503 18 C 0.128 3.872 19 N -0.568 5.568 20 C 0.708 3.292 21 O -0.532 6.532 22 N -0.709 5.709 23 C 0.115 3.885 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.118 4.118 28 C 0.542 3.458 29 O -0.453 6.453 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.442 0.558 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.913 -32.333 5.222 34.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.331 5.331 3 C 0.128 3.872 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.290 3.710 13 O -0.393 6.393 14 C -0.025 4.025 15 O -0.236 6.236 16 C 0.291 3.709 17 O -0.391 6.391 18 C 0.005 3.995 19 N -0.315 5.315 20 C 0.409 3.591 21 O -0.404 6.404 22 N -0.373 5.373 23 C 0.023 3.977 24 C -0.156 4.156 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.156 4.156 28 C 0.329 3.671 29 O -0.321 6.321 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.287 0.713 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.213 -31.661 5.309 33.399 hybrid contribution -0.355 0.340 -1.317 1.406 sum -9.568 -31.322 3.992 32.993 Atomic orbital electron populations 1.21737 0.81092 1.02954 1.00829 1.48102 1.06363 1.07207 1.71425 1.19369 0.92652 0.77426 0.97763 1.21425 1.36809 1.06390 0.92193 0.92361 1.24939 0.95239 0.96350 0.97563 1.69930 1.38269 1.14292 1.30769 0.86469 0.77692 0.78609 0.84506 1.20628 1.21029 1.19842 1.19673 0.88169 0.84203 0.78945 1.90722 1.13279 1.86685 1.48648 1.22983 0.91060 0.84133 1.04353 1.86527 1.40162 1.13894 1.83011 1.23770 0.88907 0.85239 0.72973 1.90677 1.16522 1.86668 1.45224 1.20994 0.91339 0.77753 1.09374 1.46159 1.51658 1.24850 1.08831 1.15930 0.78674 0.80630 0.83885 1.91060 1.60334 1.68984 1.20014 1.45224 1.57334 1.27983 1.06764 1.21379 0.98557 0.95641 0.82111 1.22516 0.98898 0.91294 1.02922 1.22214 0.93263 0.97682 1.02905 1.22222 0.97725 0.93196 1.02957 1.22506 0.91547 0.98537 1.03054 1.20463 0.77986 0.83937 0.84719 1.90830 1.54721 1.69233 1.17318 0.93271 0.90168 0.92521 0.94555 0.93567 0.92645 0.88449 0.88615 0.83922 0.83722 0.71310 0.88791 0.89766 0.90625 0.91122 0.91117 0.90613 0.89612 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.24 59.85 0.61 1.83 16 2 N -0.60 -12.71 2.86 -182.95 -0.52 -13.23 16 3 C 0.25 6.43 5.16 -5.19 -0.03 6.41 16 4 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.51 10.80 7.75 -10.98 -0.09 10.71 16 13 O -0.52 -13.37 16.08 -14.11 -0.23 -13.60 16 14 C 0.05 0.85 4.50 36.00 0.16 1.02 16 15 O -0.32 -5.32 9.75 -45.89 -0.45 -5.76 16 16 C 0.45 6.44 8.03 36.00 0.29 6.73 16 17 O -0.50 -8.05 16.18 -18.75 -0.30 -8.35 16 18 C 0.13 1.35 6.31 -5.20 -0.03 1.32 16 19 N -0.57 -5.96 2.11 -122.23 -0.26 -6.22 16 20 C 0.71 7.60 8.64 -87.42 -0.76 6.84 16 21 O -0.53 -7.56 17.50 5.33 0.09 -7.47 16 22 N -0.71 -4.77 6.03 -53.62 -0.32 -5.09 16 23 C 0.11 0.74 1.04 -132.88 -0.14 0.60 16 24 C -0.12 -0.49 6.02 -25.65 -0.15 -0.64 16 25 C -0.12 -0.32 6.82 -25.44 -0.17 -0.50 16 26 C -0.12 -0.38 6.82 -25.44 -0.17 -0.56 16 27 C -0.12 -0.64 6.03 -25.65 -0.15 -0.80 16 28 C 0.54 5.27 7.02 -10.99 -0.08 5.20 16 29 O -0.45 -5.37 17.79 5.60 0.10 -5.27 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 32 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 33 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.10 1.46 7.39 -51.93 -0.38 1.08 16 37 H 0.10 1.35 8.10 -51.93 -0.42 0.93 16 38 H 0.14 1.16 8.02 -51.93 -0.42 0.75 16 39 H 0.15 1.31 7.87 -51.93 -0.41 0.90 16 40 H 0.44 1.91 8.96 -40.82 -0.37 1.54 16 41 H 0.09 0.42 8.07 -51.93 -0.42 0.00 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 LS Contribution 411.28 15.07 6.20 6.20 Total: -1.00 -38.58 411.28 -8.00 -46.58 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.90 Total: -3.41 kcal Atomic # 6 Polarization: 25.58 SS G_CDS: -1.13 Total: 24.45 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.37 Total: -50.32 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.79 Total: -40.45 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -38.58 -8.00 -46.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005874263.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.529 kcal (2) G-P(sol) polarization free energy of solvation -38.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds