Wall clock time and date at job start Tue Mar 31 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38811 * 120.75694 * 2 1 4 4 C 1.38107 * 119.30016 * 180.02562 * 3 2 1 5 5 N 1.31902 * 120.84443 * 0.02996 * 4 3 2 6 6 C 1.32323 * 121.64901 * 359.97438 * 5 4 3 7 7 N 1.39665 * 119.69628 * 179.72607 * 6 5 4 8 8 C 1.36844 * 119.74405 * 271.28891 * 7 6 5 9 9 S 1.76206 * 118.49155 * 359.97122 * 8 7 6 10 10 C 1.80992 * 100.00197 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47278 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47115 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99743 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99832 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00135 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99961 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47046 * 59.99818 * 16 14 12 18 18 H 1.48498 * 109.47212 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47215 * 300.00189 * 16 14 12 20 20 N 1.31005 * 123.01978 * 179.68540 * 8 7 6 21 21 C 1.35356 * 121.52529 * 0.58762 * 20 8 7 22 22 C 1.39800 * 121.61265 * 179.73239 * 21 20 8 23 23 C 1.36644 * 119.65900 * 179.97438 * 22 21 20 24 24 C 1.38898 * 120.97214 * 0.02562 * 23 22 21 25 25 C 1.36755 * 120.73711 * 359.97438 * 24 23 22 26 26 C 1.39427 * 119.51478 * 0.02562 * 25 24 23 27 27 C 1.35316 * 119.75134 * 91.55197 * 7 6 5 28 28 O 1.21726 * 121.21748 * 0.02887 * 27 7 6 29 29 C 1.38398 * 120.75675 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47264 * 89.99461 * 1 2 3 31 31 H 1.09002 * 109.47261 * 210.00004 * 1 2 3 32 32 H 1.09004 * 109.47129 * 329.99254 * 1 2 3 33 33 H 1.07998 * 120.35056 * 0.02562 * 3 2 1 34 34 H 1.08007 * 119.57426 * 180.02562 * 4 3 2 35 35 H 1.09011 * 109.46923 * 300.00283 * 10 9 8 36 36 H 1.09001 * 109.47535 * 59.99664 * 10 9 8 37 37 H 1.08994 * 109.47090 * 299.99688 * 11 10 9 38 38 H 1.09001 * 109.46713 * 60.00161 * 11 10 9 39 39 H 0.96996 * 120.00396 * 180.02562 * 15 14 12 40 40 H 1.07997 * 120.16591 * 359.95257 * 22 21 20 41 41 H 1.08007 * 119.51146 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.62851 * 180.02562 * 24 23 22 43 43 H 1.08004 * 120.24504 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.44343 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1929 0.0000 4 6 3.5975 1.1578 -0.0005 5 7 4.2448 0.0085 -0.0016 6 6 3.6040 -1.1493 -0.0018 7 7 4.3304 -2.3421 -0.0088 8 6 4.7005 -2.9047 -1.2001 9 16 4.2387 -2.0911 -2.6933 10 6 4.9576 -3.2268 -3.9054 11 6 4.6759 -2.7105 -5.3178 12 6 5.2750 -3.6558 -6.3270 13 1 5.8035 -4.5370 -5.9942 14 6 5.1476 -3.3964 -7.6751 15 7 4.5036 -2.3237 -8.0803 16 14 5.8896 -4.5685 -8.9261 17 1 5.2860 -5.9153 -8.7613 18 1 5.6152 -4.0680 -10.2970 19 1 7.3569 -4.6544 -8.7144 20 7 5.3869 -4.0175 -1.2813 21 6 5.7685 -4.6962 -0.1741 22 6 6.4963 -5.8868 -0.2589 23 6 6.8614 -6.5390 0.8850 24 6 6.5195 -6.0370 2.1342 25 6 5.8081 -4.8748 2.2497 26 6 5.4224 -4.1883 1.0990 27 6 4.6583 -2.9355 1.1623 28 8 4.3312 -2.4493 2.2293 29 6 2.2148 -1.1893 -0.0005 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 1.6951 2.1384 0.0004 34 1 4.1543 2.0833 -0.0001 35 1 6.0348 -3.2898 -3.7500 36 1 4.5147 -4.2154 -3.7844 37 1 3.5990 -2.6472 -5.4734 38 1 5.1192 -1.7221 -5.4384 39 1 4.4136 -2.1413 -9.0287 40 1 6.7683 -6.2891 -1.2235 41 1 7.4233 -7.4588 0.8168 42 1 6.8197 -6.5701 3.0242 43 1 5.5469 -4.4914 3.2250 44 1 1.6945 -2.1357 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005922954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:49 Heat of formation + Delta-G solvation = 53.180134 kcal Electronic energy + Delta-G solvation = -29432.431341 eV Core-core repulsion = 25440.981077 eV Total energy + Delta-G solvation = -3991.450264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.97058 -40.27297 -38.52279 -37.50483 -34.85776 -33.98211 -33.75098 -31.61627 -31.03451 -30.44042 -30.03340 -28.15596 -25.49857 -25.25863 -24.97575 -23.47700 -22.24280 -22.05482 -21.29875 -19.14134 -18.94869 -18.28169 -17.29077 -16.63373 -16.40623 -16.08023 -15.94086 -15.53319 -15.11888 -14.74012 -14.57605 -14.54845 -14.39960 -14.00881 -13.99577 -13.70853 -13.33656 -13.12026 -13.09114 -12.93961 -12.54125 -12.24984 -12.17686 -12.12207 -11.86082 -11.72267 -11.06359 -10.75401 -10.56782 -10.49473 -10.34226 -10.27834 -10.12899 -9.76761 -9.74564 -9.67650 -9.33170 -9.29276 -9.20907 -8.64557 -8.47974 -7.48156 -6.12851 -4.17359 0.35112 0.67103 0.73351 0.98846 1.17019 2.06783 2.09780 2.60444 2.68374 3.28452 3.32932 3.35766 3.38814 3.85619 4.09918 4.22687 4.33782 4.37756 4.40625 4.55573 4.70187 4.75792 4.79665 4.84256 5.11080 5.18702 5.23145 5.23542 5.27624 5.32809 5.44010 5.57047 5.68528 5.80866 5.87722 5.93897 5.94068 6.02051 6.09508 6.14638 6.28364 6.38360 6.45375 6.60965 6.66126 7.41417 7.47285 7.51574 7.65153 7.68031 7.82339 8.18083 8.86813 9.47166 10.98080 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.007158 B = 0.003493 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3910.979536 B = 8014.032765 C =11374.573458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.031 4.031 3 C -0.160 4.160 4 C 0.121 3.879 5 N -0.470 5.470 6 C 0.326 3.674 7 N -0.484 5.484 8 C 0.385 3.615 9 S -0.021 6.021 10 C -0.075 4.075 11 C 0.035 3.965 12 C -0.519 4.519 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.899 3.101 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 N -0.524 5.524 21 C 0.180 3.820 22 C -0.114 4.114 23 C -0.069 4.069 24 C -0.151 4.151 25 C -0.036 4.036 26 C -0.208 4.208 27 C 0.563 3.437 28 O -0.506 6.506 29 C -0.136 4.136 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.264 0.736 40 H 0.142 0.858 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.290 0.934 19.682 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.040 4.040 3 C -0.179 4.179 4 C -0.037 4.037 5 N -0.180 5.180 6 C 0.100 3.900 7 N -0.208 5.208 8 C 0.013 3.987 9 S 0.218 5.782 10 C -0.223 4.223 11 C -0.005 4.005 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.200 1.200 20 N -0.251 5.251 21 C 0.065 3.935 22 C -0.135 4.135 23 C -0.088 4.088 24 C -0.170 4.170 25 C -0.055 4.055 26 C -0.215 4.215 27 C 0.356 3.644 28 O -0.379 6.379 29 C -0.158 4.158 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.162 0.838 34 H 0.184 0.816 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.983 1.956 19.326 19.829 hybrid contribution 0.159 -1.411 0.205 1.435 sum -3.823 0.545 19.531 19.909 Atomic orbital electron populations 1.20856 0.89355 1.03564 1.03539 1.20239 0.97210 0.92034 0.94518 1.22178 0.95546 0.98948 1.01255 1.22603 0.91741 0.94846 0.94499 1.67091 1.41969 0.97793 1.11177 1.17897 0.87589 0.84859 0.99614 1.43867 1.49900 1.20325 1.06680 1.25581 0.90591 0.91836 0.90645 1.86282 1.67135 1.33396 0.91428 1.24134 1.03395 0.98821 0.95968 1.19012 0.98197 0.97439 0.85828 1.20989 1.35898 1.08635 0.90368 0.92060 1.24995 0.95137 0.95467 0.98525 1.69943 1.41429 1.25947 1.15715 0.86549 0.79749 0.81024 0.80085 1.20055 1.21186 1.20039 1.69333 1.19507 1.07475 1.28738 1.18910 0.93587 0.93950 0.87028 1.20674 0.99222 0.93682 0.99887 1.21035 0.96755 0.99051 0.91981 1.20858 1.01167 0.96963 0.98004 1.20704 0.94054 0.93487 0.97294 1.20415 1.07943 0.97395 0.95783 1.18430 0.79157 0.84475 0.82304 1.90843 1.53902 1.65750 1.27434 1.21794 0.92795 0.99987 1.01185 0.89747 0.90838 0.90622 0.83837 0.81622 0.89118 0.89140 0.95465 0.95428 0.92640 0.84068 0.84979 0.85217 0.84788 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.06 36.01 0.36 -0.45 16 2 C -0.03 -0.33 5.91 -104.35 -0.62 -0.94 16 3 C -0.16 -1.51 9.81 -39.42 -0.39 -1.90 16 4 C 0.12 1.39 11.18 -17.57 -0.20 1.20 16 5 N -0.47 -7.32 10.39 -12.32 -0.13 -7.45 16 6 C 0.33 5.18 4.10 -154.49 -0.63 4.54 16 7 N -0.48 -8.30 2.75 -63.03 -0.17 -8.47 16 8 C 0.38 6.79 7.76 -88.29 -0.68 6.10 16 9 S -0.02 -0.38 20.73 -107.50 -2.23 -2.61 16 10 C -0.08 -1.52 4.72 37.16 0.18 -1.35 16 11 C 0.03 0.85 4.98 -27.88 -0.14 0.71 16 12 C -0.52 -13.94 9.11 -34.44 -0.31 -14.26 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 16 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 N -0.52 -9.22 8.98 -10.73 -0.10 -9.31 16 21 C 0.18 2.84 6.63 -84.54 -0.56 2.28 16 22 C -0.11 -1.47 10.00 -39.57 -0.40 -1.86 16 23 C -0.07 -0.70 9.95 -39.91 -0.40 -1.09 16 24 C -0.15 -1.52 9.97 -39.87 -0.40 -1.92 16 25 C -0.04 -0.45 9.63 -39.68 -0.38 -0.84 16 26 C -0.21 -3.25 5.89 -104.77 -0.62 -3.87 16 27 C 0.56 9.82 7.62 -12.52 -0.10 9.72 16 28 O -0.51 -9.49 16.68 5.17 0.09 -9.41 16 29 C -0.14 -1.79 9.72 -39.25 -0.38 -2.17 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.17 1.36 8.06 -52.48 -0.42 0.93 16 35 H 0.09 1.85 8.09 -51.91 -0.42 1.43 16 36 H 0.09 1.81 8.10 -51.92 -0.42 1.39 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 1.56 7.82 -52.48 -0.41 1.15 16 44 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -33.19 395.20 -12.07 -45.26 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.44 Total: -0.34 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -5.76 Total: -4.50 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.34 Total: -50.19 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.23 Total: -2.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.19 -12.07 -45.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005922954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.438 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds