Wall clock time and date at job start Tue Mar 31 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31458 * 1 3 3 Si 1.86800 * 120.00107 * 2 1 4 4 H 1.48497 * 109.47223 * 270.00391 * 3 2 1 5 5 H 1.48503 * 109.46751 * 30.00421 * 3 2 1 6 6 H 1.48503 * 109.47089 * 150.00074 * 3 2 1 7 7 C 1.38807 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99907 * 168.88799 * 7 2 1 9 9 N 1.37069 * 120.00490 * 348.88286 * 7 2 1 10 10 C 1.36247 * 124.87104 * 338.51165 * 9 7 2 11 11 C 1.36284 * 109.70129 * 179.97438 * 10 9 7 12 12 C 1.46927 * 126.70408 * 179.97438 * 11 10 9 13 13 N 1.30084 * 120.00059 * 180.02562 * 12 11 10 14 14 N 1.40101 * 119.99919 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99476 * 180.02562 * 14 13 12 16 16 O 1.21607 * 120.00134 * 359.97438 * 15 14 13 17 17 C 1.47788 * 119.99784 * 180.02562 * 15 14 13 18 18 C 1.39630 * 120.13861 * 359.96994 * 17 15 14 19 19 C 1.37931 * 119.87649 * 180.02562 * 18 17 15 20 20 C 1.38371 * 120.16504 * 0.02562 * 19 18 17 21 21 C 1.38463 * 120.28186 * 0.02562 * 20 19 18 22 22 Cl 1.73593 * 119.93714 * 180.02562 * 21 20 19 23 23 C 1.38090 * 120.12019 * 359.97348 * 21 20 19 24 24 C 1.47582 * 106.59004 * 0.22409 * 11 10 9 25 25 C 1.39194 * 133.90529 * 179.75221 * 24 11 10 26 26 C 1.37895 * 119.68236 * 180.02562 * 25 24 11 27 27 C 1.38672 * 120.29115 * 359.97438 * 26 25 24 28 28 C 1.37932 * 120.60736 * 359.64388 * 27 26 25 29 29 C 1.38326 * 124.87806 * 158.49187 * 9 7 2 30 30 H 0.96998 * 120.00147 * 359.97438 * 1 2 3 31 31 H 1.07994 * 125.15207 * 0.02562 * 10 9 7 32 32 H 1.08003 * 120.00432 * 0.02562 * 12 11 10 33 33 H 0.96999 * 119.99870 * 0.02562 * 14 13 12 34 34 H 1.07994 * 120.06426 * 0.05332 * 18 17 15 35 35 H 1.08005 * 119.92371 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.85952 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.07905 * 179.74981 * 23 21 20 38 38 H 1.08003 * 120.16023 * 0.04757 * 25 24 11 39 39 H 1.08000 * 119.85547 * 180.02562 * 26 25 24 40 40 H 1.07999 * 119.69804 * 180.02562 * 27 26 25 41 41 H 1.07999 * 120.03746 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 2.4960 2.0465 -1.4000 5 1 1.4460 2.6526 0.7002 6 1 3.5462 1.4401 0.7000 7 6 2.0085 -1.2022 -0.0005 8 1 3.0734 -1.2109 -0.1808 9 7 1.3425 -2.3782 0.2278 10 6 0.1400 -2.4823 0.8599 11 6 -0.2365 -3.7908 0.9183 12 6 -1.4666 -4.3247 1.5188 13 7 -1.6961 -5.6050 1.5020 14 7 -2.8688 -6.1141 2.0750 15 6 -3.1061 -7.4407 2.0580 16 8 -2.3027 -8.1957 1.5449 17 6 -4.3434 -7.9777 2.6620 18 6 -5.2682 -7.1135 3.2516 19 6 -6.4209 -7.6206 3.8142 20 6 -6.6624 -8.9829 3.7960 21 6 -5.7495 -9.8461 3.2141 22 17 -6.0618 -11.5536 3.1958 23 6 -4.5916 -9.3511 2.6475 24 6 0.8356 -4.5673 0.2659 25 6 1.0327 -5.9231 0.0199 26 6 2.1743 -6.3400 -0.6316 27 6 3.1230 -5.4153 -1.0414 28 6 2.9362 -4.0683 -0.8108 29 6 1.7944 -3.6295 -0.1507 30 1 -0.4850 0.8400 0.0004 31 1 -0.4290 -1.6535 1.2542 32 1 -2.1804 -3.6542 1.9741 33 1 -3.5098 -5.5118 2.4840 34 1 -5.0814 -6.0499 3.2667 35 1 -7.1369 -6.9527 4.2700 36 1 -7.5668 -9.3746 4.2376 37 1 -3.8781 -10.0254 2.1973 38 1 0.2948 -6.6451 0.3374 39 1 2.3299 -7.3912 -0.8243 40 1 4.0134 -5.7524 -1.5512 41 1 3.6813 -3.3562 -1.1335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006269954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:40 Heat of formation + Delta-G solvation = 84.726603 kcal Electronic energy + Delta-G solvation = -27870.222601 eV Core-core repulsion = 23742.263494 eV Total energy + Delta-G solvation = -4127.959107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.083 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.28261 -40.19332 -38.46441 -36.76008 -36.21448 -35.99012 -33.53294 -32.54327 -31.51779 -31.15941 -29.96568 -28.75148 -27.91624 -25.49175 -24.28130 -23.04436 -22.19871 -21.65434 -20.73974 -20.34308 -19.27182 -18.04436 -17.75456 -16.70800 -16.47995 -15.86497 -15.72528 -15.22196 -14.99008 -14.93935 -14.75927 -14.34977 -14.18881 -14.05592 -13.74888 -13.61639 -13.17266 -12.94626 -12.37861 -12.32137 -12.07143 -11.96366 -11.89605 -11.71729 -11.56365 -11.40299 -11.31473 -11.15898 -10.77896 -10.73238 -10.48031 -10.09644 -9.94007 -9.56214 -9.45759 -9.33594 -9.19497 -9.03047 -8.15175 -7.25816 -7.03387 -6.58168 -4.50082 0.38876 0.77119 1.71001 1.87777 2.32419 2.63278 2.78880 2.81996 2.93551 2.97468 3.03024 3.57575 3.67159 4.09186 4.30606 4.35883 4.56048 4.61779 4.68533 4.69655 4.90569 4.99671 5.10045 5.30376 5.40074 5.52813 5.72805 5.79111 5.80707 5.83773 5.91181 6.01948 6.23728 6.32799 6.39068 6.53199 6.74704 6.87660 6.95025 7.00278 7.07063 7.36122 7.36866 7.47019 7.58291 7.84546 7.94398 7.99746 8.25709 8.74803 8.82214 9.16350 10.06585 Molecular weight = 367.08amu Principal moments of inertia in cm(-1) A = 0.015363 B = 0.001871 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.073085 B =14962.264464 C =16729.747652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.338 4.338 8 H 0.110 0.890 9 N -0.273 5.273 10 C 0.133 3.867 11 C -0.245 4.245 12 C 0.196 3.804 13 N -0.288 5.288 14 N -0.579 5.579 15 C 0.571 3.429 16 O -0.505 6.505 17 C -0.109 4.109 18 C -0.085 4.085 19 C -0.112 4.112 20 C -0.090 4.090 21 C -0.042 4.042 22 Cl -0.063 7.063 23 C -0.051 4.051 24 C -0.067 4.067 25 C -0.076 4.076 26 C -0.161 4.161 27 C -0.137 4.137 28 C -0.107 4.107 29 C 0.046 3.954 30 H 0.283 0.717 31 H 0.179 0.821 32 H 0.103 0.897 33 H 0.372 0.628 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 -8.728 7.735 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.466 4.466 8 H 0.128 0.872 9 N 0.066 4.934 10 C -0.013 4.013 11 C -0.256 4.256 12 C -0.009 4.009 13 N -0.095 5.095 14 N -0.319 5.319 15 C 0.357 3.643 16 O -0.379 6.379 17 C -0.114 4.114 18 C -0.104 4.104 19 C -0.131 4.131 20 C -0.109 4.109 21 C -0.069 4.069 22 Cl -0.034 7.034 23 C -0.071 4.071 24 C -0.072 4.072 25 C -0.095 4.095 26 C -0.180 4.180 27 C -0.157 4.157 28 C -0.127 4.127 29 C -0.061 4.061 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.120 0.880 33 H 0.210 0.790 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.142 0.858 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.472 -9.912 7.064 16.726 hybrid contribution -0.618 1.852 0.427 1.998 sum -12.090 -8.060 7.490 16.347 Atomic orbital electron populations 1.69848 1.06301 1.29352 1.42426 1.25534 0.95797 1.00754 0.94521 0.85669 0.79436 0.79132 0.79145 1.19550 1.19951 1.18698 1.19911 0.94321 0.81894 1.50477 0.87200 1.40060 1.14411 1.03939 1.34962 1.22189 0.88308 0.95607 0.95155 1.17889 0.96741 0.92058 1.18926 1.23588 0.94447 0.90400 0.92435 1.75458 1.01322 1.14721 1.17977 1.46788 1.20048 1.07401 1.57692 1.17677 0.85565 0.80987 0.80089 1.90800 1.46682 1.56958 1.43471 1.19906 0.95679 0.93764 1.02081 1.21485 0.93414 0.99867 0.95643 1.21080 0.97491 0.94670 0.99810 1.21277 0.98740 0.93045 0.97791 1.20816 0.96948 0.85665 1.03483 1.98387 1.95499 1.12175 1.97388 1.21169 0.95442 0.94658 0.95837 1.18794 0.94178 0.92445 1.01816 1.20567 0.96964 0.94113 0.97826 1.20694 0.95669 0.98305 1.03354 1.20512 0.99436 0.92261 1.03442 1.19914 0.96036 0.95310 1.01466 1.18473 0.97739 0.85431 1.04464 0.90620 0.80437 0.87963 0.79019 0.84915 0.84245 0.84425 0.83289 0.85804 0.87514 0.87341 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.81 10.86 55.49 0.60 -19.20 16 2 C 0.04 0.98 5.34 -17.50 -0.09 0.89 16 3 Si 0.94 17.47 29.57 -169.99 -5.03 12.44 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.34 -8.12 9.89 -15.00 -0.15 -8.27 16 8 H 0.11 2.52 7.85 -52.48 -0.41 2.10 16 9 N -0.27 -6.66 2.89 -59.48 -0.17 -6.83 16 10 C 0.13 3.05 9.85 -16.29 -0.16 2.89 16 11 C -0.25 -5.39 6.27 -103.27 -0.65 -6.03 16 12 C 0.20 3.62 10.98 -14.78 -0.16 3.46 16 13 N -0.29 -5.54 9.82 32.08 0.31 -5.22 16 14 N -0.58 -8.87 6.22 30.52 0.19 -8.68 16 15 C 0.57 9.09 7.89 -12.35 -0.10 8.99 16 16 O -0.51 -10.17 16.69 5.27 0.09 -10.08 16 17 C -0.11 -1.29 5.87 -104.98 -0.62 -1.91 16 18 C -0.09 -0.72 9.54 -39.17 -0.37 -1.09 16 19 C -0.11 -0.76 10.03 -39.64 -0.40 -1.16 16 20 C -0.09 -0.66 9.82 -39.45 -0.39 -1.05 16 21 C -0.04 -0.40 6.31 -39.55 -0.25 -0.65 16 22 Cl -0.06 -0.57 28.95 -51.86 -1.50 -2.07 16 23 C -0.05 -0.58 9.38 -39.14 -0.37 -0.95 16 24 C -0.07 -1.56 6.25 -104.90 -0.66 -2.22 16 25 C -0.08 -1.67 9.81 -39.35 -0.39 -2.05 16 26 C -0.16 -3.17 10.03 -39.55 -0.40 -3.57 16 27 C -0.14 -2.62 10.02 -39.53 -0.40 -3.01 16 28 C -0.11 -2.27 9.93 -39.41 -0.39 -2.67 16 29 C 0.05 1.09 6.73 -83.82 -0.56 0.53 16 30 H 0.28 6.09 8.31 -40.82 -0.34 5.75 16 31 H 0.18 3.95 6.35 -52.49 -0.33 3.62 16 32 H 0.10 1.50 8.03 -52.48 -0.42 1.08 16 33 H 0.37 4.15 6.69 -182.60 -1.22 2.93 16 34 H 0.13 0.83 6.40 -52.49 -0.34 0.50 16 35 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 36 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 37 H 0.15 1.80 7.65 -52.49 -0.40 1.40 16 38 H 0.12 2.78 7.23 -52.48 -0.38 2.40 16 39 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -29.83 379.06 -11.04 -40.87 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -4.75 Total: 10.94 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -6.49 Total: -17.87 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.93 Total: -39.94 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.83 -11.04 -40.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006269954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.596 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds