Wall clock time and date at job start Tue Mar 31 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21270 * 120.00179 * 2 1 4 4 N 1.34776 * 119.99706 * 179.97438 * 2 1 3 5 5 C 1.39452 * 120.00131 * 185.22364 * 4 2 1 6 6 C 1.39132 * 119.91800 * 33.83032 * 5 4 2 7 7 C 1.37668 * 120.07023 * 180.27520 * 6 5 4 8 8 C 1.39773 * 119.92215 * 359.48053 * 7 6 5 9 9 C 1.47553 * 120.07357 * 180.22808 * 8 7 6 10 10 O 1.21626 * 119.99774 * 180.31015 * 9 8 7 11 11 N 1.34768 * 119.99986 * 0.31469 * 9 8 7 12 12 N 1.40101 * 119.99908 * 180.02562 * 11 9 8 13 13 C 1.29773 * 120.00175 * 179.97438 * 12 11 9 14 14 C 1.47488 * 120.00481 * 179.97438 * 13 12 11 15 15 C 1.39765 * 120.11741 * 359.72233 * 14 13 12 16 16 C 1.37980 * 119.97439 * 179.71888 * 15 14 13 17 17 C 1.38249 * 120.23105 * 0.56021 * 16 15 14 18 18 C 1.38976 * 120.24808 * 359.71825 * 17 16 15 19 19 O 1.35765 * 119.98851 * 179.97438 * 18 17 16 20 20 C 1.34831 * 116.99871 * 185.92997 * 19 18 17 21 21 H 1.08002 * 119.99881 * 5.40436 * 20 19 18 22 22 C 1.38657 * 120.00067 * 185.40555 * 20 19 18 23 23 N 1.31557 * 120.00010 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99907 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46772 * 90.00536 * 24 22 20 26 26 H 1.48501 * 109.47181 * 210.00209 * 24 22 20 27 27 H 1.48498 * 109.47007 * 330.00661 * 24 22 20 28 28 C 1.38607 * 120.02138 * 0.02562 * 18 17 16 29 29 C 1.39778 * 119.85112 * 0.54141 * 8 7 6 30 30 C 1.37665 * 119.91713 * 359.70680 * 29 8 7 31 31 H 1.08996 * 109.47097 * 270.00422 * 1 2 3 32 32 H 1.09003 * 109.46538 * 29.99843 * 1 2 3 33 33 H 1.08992 * 109.47042 * 149.99986 * 1 2 3 34 34 H 0.97001 * 119.99933 * 5.22501 * 4 2 1 35 35 H 1.07991 * 119.96915 * 0.02562 * 6 5 4 36 36 H 1.07999 * 120.03643 * 179.70138 * 7 6 5 37 37 H 0.97002 * 120.00499 * 359.97438 * 11 9 8 38 38 H 1.08005 * 120.00431 * 0.02562 * 13 12 11 39 39 H 1.07999 * 120.01546 * 359.97438 * 15 14 13 40 40 H 1.07998 * 119.88192 * 180.25909 * 16 15 14 41 41 H 1.08001 * 119.87479 * 179.69546 * 17 16 15 42 42 H 0.96994 * 119.99998 * 179.97438 * 23 22 20 43 43 H 1.07995 * 120.11660 * 179.97438 * 28 18 17 44 44 H 1.07996 * 120.03687 * 179.68868 * 29 8 7 45 45 H 1.07994 * 119.95599 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5711 -1.1698 0.1105 6 6 4.2082 -0.2006 0.8789 7 6 5.5807 -0.1968 0.9851 8 6 6.3335 -1.1745 0.3285 9 6 7.8045 -1.1766 0.4441 10 8 8.4586 -2.0246 -0.1324 11 7 8.4233 -0.2388 1.1884 12 7 9.8200 -0.2405 1.2977 13 6 10.4159 0.6628 2.0140 14 6 11.8863 0.6608 2.1296 15 6 12.6400 -0.3163 1.4733 16 6 14.0157 -0.3119 1.5787 17 6 14.6524 0.6495 2.3413 18 6 13.9119 1.6220 3.0026 19 8 14.5425 2.5633 3.7505 20 6 13.7634 3.4013 4.4638 21 1 12.6942 3.2514 4.4929 22 6 14.3348 4.4555 5.1600 23 7 13.5747 5.2729 5.8563 24 14 16.1841 4.7144 5.1102 25 1 16.5289 5.6044 3.9726 26 1 16.6308 5.3398 6.3809 27 1 16.8627 3.4049 4.9376 28 6 12.5296 1.6306 2.8996 29 6 5.6902 -2.1464 -0.4430 30 6 4.3176 -2.1412 -0.5489 31 1 -0.3633 0.0001 1.0276 32 1 -0.3632 0.8901 -0.5138 33 1 -0.3633 -0.8899 -0.5138 34 1 1.6988 -2.0055 -0.0756 35 1 3.6257 0.5519 1.3895 36 1 6.0750 0.5587 1.5778 37 1 7.9017 0.4377 1.6479 38 1 9.8352 1.4156 2.5263 39 1 12.1460 -1.0720 0.8805 40 1 14.5969 -1.0652 1.0675 41 1 15.7292 0.6445 2.4238 42 1 13.9745 6.0101 6.3436 43 1 11.9527 2.3853 3.4131 44 1 6.2692 -2.9002 -0.9556 45 1 3.8199 -2.8915 -1.1452 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006562973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:40 Heat of formation + Delta-G solvation = 6.956891 kcal Electronic energy + Delta-G solvation = -29637.038559 eV Core-core repulsion = 25200.831034 eV Total energy + Delta-G solvation = -4436.207525 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.17160 -40.01259 -39.23567 -38.36971 -37.11358 -35.97987 -35.34822 -32.94721 -32.35270 -31.51143 -31.39003 -30.04030 -29.26014 -28.69582 -25.33706 -24.59121 -23.44840 -23.24090 -21.61691 -21.27431 -20.67867 -20.30791 -18.62510 -18.16272 -17.96754 -17.53029 -16.95362 -16.75330 -16.18096 -15.39608 -15.23206 -15.21274 -15.08102 -14.81884 -14.68904 -14.20480 -13.95262 -13.93885 -13.93190 -13.69655 -13.50589 -13.28812 -12.94726 -12.89011 -12.82185 -12.55015 -12.32073 -12.20996 -11.78350 -11.38802 -10.99012 -10.96041 -10.89633 -10.82947 -10.53216 -10.26534 -10.22430 -10.03441 -9.51864 -9.48101 -9.37792 -8.88214 -8.70271 -7.95579 -7.42067 -6.44815 -4.12231 0.29851 0.92595 1.18730 1.89243 2.19993 2.37637 2.41049 2.54844 2.94980 3.21138 3.25041 3.39272 3.53840 4.02983 4.21598 4.31157 4.31861 4.47626 4.48993 4.52734 4.72024 4.72563 4.79790 4.85000 4.91868 4.96619 5.05405 5.09962 5.18624 5.47873 5.60851 5.65046 5.69587 5.73050 5.86252 5.89075 5.90285 6.03429 6.21089 6.41207 6.46832 6.60323 6.69725 6.97869 7.04730 7.11771 7.13488 7.44342 7.49870 7.51727 7.72131 7.98561 8.32774 8.90530 9.51855 10.62756 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.001490 C = 0.001353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.446064 B =18790.780817 C =20684.845636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.509 3.491 3 O -0.519 6.519 4 N -0.675 5.675 5 C 0.171 3.829 6 C -0.128 4.128 7 C -0.064 4.064 8 C -0.146 4.146 9 C 0.578 3.422 10 O -0.505 6.505 11 N -0.582 5.582 12 N -0.240 5.240 13 C 0.134 3.866 14 C -0.026 4.026 15 C -0.155 4.155 16 C -0.087 4.087 17 C -0.169 4.169 18 C 0.152 3.848 19 O -0.217 6.217 20 C -0.391 4.391 21 H 0.106 0.894 22 C 0.064 3.936 23 N -0.879 5.879 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.259 1.259 28 C -0.186 4.186 29 C -0.034 4.034 30 C -0.154 4.154 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.414 0.586 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.382 0.618 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.280 0.720 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.049 -14.031 -10.679 31.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.298 3.702 3 O -0.393 6.393 4 N -0.321 5.321 5 C 0.076 3.924 6 C -0.149 4.149 7 C -0.084 4.084 8 C -0.151 4.151 9 C 0.366 3.634 10 O -0.378 6.378 11 N -0.324 5.324 12 N -0.044 5.044 13 C -0.076 4.076 14 C -0.028 4.028 15 C -0.176 4.176 16 C -0.106 4.106 17 C -0.190 4.190 18 C 0.100 3.900 19 O -0.122 6.122 20 C -0.467 4.467 21 H 0.123 0.877 22 C -0.139 4.139 23 N -0.517 5.517 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.183 1.183 28 C -0.208 4.208 29 C -0.053 4.053 30 C -0.174 4.174 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.251 0.749 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.221 0.779 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.090 0.910 43 H 0.157 0.843 44 H 0.162 0.838 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -25.092 -14.412 -11.505 31.140 hybrid contribution -0.313 1.036 0.862 1.383 sum -25.405 -13.376 -10.643 30.620 Atomic orbital electron populations 1.21906 0.90288 1.05501 1.05396 1.21115 0.91093 0.83027 0.74975 1.90788 1.70509 1.31139 1.46902 1.43650 1.05214 1.10298 1.72963 1.17945 0.82934 0.96515 0.95015 1.21041 0.94434 0.99979 0.99403 1.21217 0.93663 0.96521 0.96950 1.19815 0.91983 0.99417 1.03909 1.17900 0.86727 0.80498 0.78242 1.90799 1.66564 1.36277 1.44210 1.46865 1.03211 1.31866 1.50501 1.75036 0.90308 1.21727 1.17329 1.24671 0.95311 0.93943 0.93688 1.18009 0.88291 0.96970 0.99549 1.20965 0.93584 1.00052 1.03018 1.20652 0.94163 0.97647 0.98095 1.20421 0.99672 0.96413 1.02454 1.18912 0.90559 0.89699 0.90841 1.83621 1.35835 1.39800 1.52946 1.20723 0.92638 1.07486 1.25820 0.87697 1.24457 1.00174 0.94115 0.95182 1.69639 1.36126 1.15762 1.30170 0.86183 0.83654 0.79473 0.77620 1.19906 1.20808 1.18286 1.21322 0.94635 1.01185 1.03632 1.21056 0.93431 0.96335 0.94512 1.20860 0.93698 1.01073 1.01770 0.88177 0.88270 0.89787 0.74946 0.84141 0.85210 0.77885 0.86463 0.85925 0.86303 0.86200 0.91035 0.84335 0.83835 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.30 10.31 36.01 0.37 0.07 16 2 C 0.51 3.09 7.67 -10.98 -0.08 3.01 16 3 O -0.52 -5.62 14.80 5.57 0.08 -5.54 16 4 N -0.68 -3.14 5.32 -9.85 -0.05 -3.19 16 5 C 0.17 1.28 6.27 -83.73 -0.52 0.76 16 6 C -0.13 -1.15 8.62 -39.46 -0.34 -1.49 16 7 C -0.06 -0.58 9.53 -39.22 -0.37 -0.96 16 8 C -0.15 -1.57 5.88 -104.95 -0.62 -2.19 16 9 C 0.58 8.20 7.88 -12.47 -0.10 8.10 16 10 O -0.51 -9.00 16.68 5.25 0.09 -8.91 16 11 N -0.58 -7.88 6.21 30.47 0.19 -7.69 16 12 N -0.24 -3.92 10.15 32.17 0.33 -3.60 16 13 C 0.13 2.08 10.75 -14.65 -0.16 1.92 16 14 C -0.03 -0.46 5.87 -105.07 -0.62 -1.08 16 15 C -0.16 -2.72 9.58 -39.11 -0.37 -3.10 16 16 C -0.09 -1.47 10.02 -39.67 -0.40 -1.87 16 17 C -0.17 -3.22 9.98 -39.30 -0.39 -3.61 16 18 C 0.15 3.34 6.64 -39.17 -0.26 3.08 16 19 O -0.22 -5.50 8.58 0.00 0.00 -5.50 16 20 C -0.39 -10.60 9.90 30.89 0.31 -10.29 16 21 H 0.11 2.86 5.53 -52.49 -0.29 2.57 16 22 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 23 N -0.88 -24.73 13.96 55.48 0.77 -23.95 16 24 Si 0.91 21.19 28.62 -169.99 -4.86 16.33 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 28 C -0.19 -3.77 8.87 -38.96 -0.35 -4.12 16 29 C -0.03 -0.31 9.58 -39.22 -0.38 -0.69 16 30 C -0.15 -1.06 9.94 -39.46 -0.39 -1.45 16 31 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 -0.06 8.14 -51.93 -0.42 -0.49 16 34 H 0.41 0.38 8.81 -40.82 -0.36 0.02 16 35 H 0.14 1.31 6.43 -52.49 -0.34 0.97 16 36 H 0.13 0.93 6.39 -52.49 -0.34 0.60 16 37 H 0.38 3.84 6.67 -182.60 -1.22 2.63 16 38 H 0.12 1.49 8.02 -52.48 -0.42 1.07 16 39 H 0.12 2.10 7.55 -52.49 -0.40 1.70 16 40 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 42 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.14 2.86 5.71 -52.49 -0.30 2.56 16 44 H 0.14 1.29 7.64 -52.49 -0.40 0.89 16 45 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -36.01 398.08 -7.96 -43.97 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.73 Total: 4.33 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -4.77 Total: -12.24 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 1.24 Total: -38.43 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.17 Total: -19.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.86 Total: 16.33 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.01 -7.96 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006562973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.925 kcal (2) G-P(sol) polarization free energy of solvation -36.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds