Wall clock time and date at job start Tue Mar 31 2020 06:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21290 * 119.99725 * 2 1 4 4 N 1.34768 * 120.00268 * 180.02562 * 2 1 3 5 5 C 1.39953 * 120.00169 * 185.21038 * 4 2 1 6 6 C 1.39001 * 119.99899 * 213.67417 * 5 4 2 7 7 C 1.38218 * 120.22821 * 179.97438 * 6 5 4 8 8 C 1.38005 * 120.22687 * 359.97438 * 7 6 5 9 9 C 1.39610 * 119.99575 * 359.97438 * 8 7 6 10 10 C 1.47797 * 120.11863 * 180.02562 * 9 8 7 11 11 O 1.21586 * 120.00365 * 179.97438 * 10 9 8 12 12 N 1.34775 * 119.99905 * 359.97438 * 10 9 8 13 13 N 1.40104 * 120.00434 * 180.02562 * 12 10 9 14 14 C 1.29856 * 120.00391 * 179.97438 * 13 12 10 15 15 C 1.47334 * 120.00001 * 179.97438 * 14 13 12 16 16 C 1.39822 * 120.08869 * 359.72646 * 15 14 13 17 17 C 1.37712 * 119.90910 * 179.74395 * 16 15 14 18 18 C 1.39085 * 120.09107 * 0.52667 * 17 16 15 19 19 O 1.35654 * 119.91180 * 179.74271 * 18 17 16 20 20 C 1.34801 * 116.99917 * 185.91168 * 19 18 17 21 21 H 1.08003 * 119.99766 * 5.42311 * 20 19 18 22 22 C 1.38636 * 120.00414 * 185.41727 * 20 19 18 23 23 N 1.31570 * 119.99832 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00371 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47408 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46952 * 120.00182 * 24 22 20 27 27 H 1.48498 * 109.47651 * 240.00053 * 24 22 20 28 28 C 1.39080 * 120.17345 * 359.72608 * 18 17 16 29 29 C 1.37709 * 120.08960 * 0.02562 * 28 18 17 30 30 C 1.38580 * 119.99983 * 33.66847 * 5 4 2 31 31 H 1.09001 * 109.47428 * 269.99602 * 1 2 3 32 32 H 1.08998 * 109.47783 * 29.99761 * 1 2 3 33 33 H 1.09002 * 109.46956 * 149.99769 * 1 2 3 34 34 H 0.96998 * 120.00221 * 5.20855 * 4 2 1 35 35 H 1.07994 * 119.88645 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.88653 * 179.97438 * 7 6 5 37 37 H 1.08007 * 120.00570 * 180.02562 * 8 7 6 38 38 H 0.97008 * 119.99879 * 359.97438 * 12 10 9 39 39 H 1.08000 * 119.99903 * 0.02562 * 14 13 12 40 40 H 1.08003 * 120.04397 * 359.97438 * 16 15 14 41 41 H 1.08002 * 119.95259 * 180.23217 * 17 16 15 42 42 H 0.96999 * 120.00248 * 179.97438 * 23 22 20 43 43 H 1.08003 * 119.95315 * 179.97438 * 28 18 17 44 44 H 1.08004 * 120.04646 * 180.02562 * 29 28 18 45 45 H 1.08003 * 120.11122 * 0.28224 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5761 -1.1696 0.1095 6 6 4.3232 -2.1410 -0.5464 7 6 5.7014 -2.1477 -0.4414 8 6 6.3451 -1.1896 0.3150 9 6 5.6040 -0.2089 0.9769 10 6 6.2907 0.8188 1.7873 11 8 5.6433 1.6722 2.3625 12 7 7.6346 0.8101 1.8887 13 7 8.2856 1.7839 2.6573 14 6 9.5804 1.7751 2.7553 15 6 10.2650 2.7996 3.5631 16 6 9.5227 3.7855 4.2203 17 6 10.1659 4.7382 4.9787 18 6 11.5529 4.7271 5.0825 19 8 12.1831 5.6703 5.8263 20 6 13.5305 5.6800 5.7884 21 1 14.0567 5.0162 5.1182 22 6 14.2410 6.5420 6.6095 23 7 13.6001 7.3503 7.4262 24 14 16.1082 6.5558 6.5565 25 1 16.5826 5.5608 5.5615 26 1 16.5823 7.9085 6.1679 27 1 16.6442 6.2098 7.8974 28 6 12.2952 3.7512 4.4261 29 6 11.6591 2.7920 3.6699 30 6 4.2127 -0.2036 0.8724 31 1 -0.3634 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 1.6990 -2.0054 -0.0772 35 1 3.8251 -2.8931 -1.1402 36 1 6.2764 -2.9053 -0.9531 37 1 7.4222 -1.1979 0.3943 38 1 8.1512 0.1290 1.4300 39 1 10.1556 1.0174 2.2440 40 1 8.4460 3.7977 4.1363 41 1 9.5930 5.4978 5.4897 42 1 14.0972 7.9531 8.0010 43 1 13.3720 3.7461 4.5088 44 1 12.2362 2.0343 3.1608 45 1 3.6336 0.5493 1.3865 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006563037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:43 Heat of formation + Delta-G solvation = 4.654077 kcal Electronic energy + Delta-G solvation = -29594.112318 eV Core-core repulsion = 25157.804936 eV Total energy + Delta-G solvation = -4436.307383 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.08240 -39.84026 -39.09206 -38.34149 -37.05661 -35.78959 -35.28378 -32.75051 -32.25545 -31.45915 -31.17284 -30.30158 -29.12394 -28.34895 -25.63759 -24.59263 -23.40810 -22.71938 -21.97872 -21.04086 -20.68721 -20.26772 -18.74325 -18.10933 -17.48365 -17.27895 -16.79684 -16.57930 -16.45663 -15.93810 -15.13480 -15.10800 -14.85548 -14.59148 -14.58383 -14.33121 -14.13766 -13.99064 -13.74773 -13.50805 -13.40723 -13.14747 -12.80764 -12.73434 -12.46887 -12.45099 -12.38871 -12.02447 -11.77340 -11.33329 -11.20420 -10.97716 -10.91797 -10.73387 -10.48720 -10.36613 -10.13842 -9.90736 -9.44901 -9.41524 -9.19921 -8.74017 -8.67868 -8.26646 -7.09895 -6.57186 -4.13406 0.38510 0.84322 1.43070 2.05443 2.23284 2.39980 2.57222 2.64976 2.99920 3.08312 3.14045 3.14347 3.58510 3.87874 4.13070 4.27756 4.38155 4.57907 4.58043 4.61600 4.66202 4.83897 4.89441 4.94733 4.99688 5.02233 5.14051 5.20209 5.25978 5.42724 5.58663 5.71996 5.76806 5.79614 5.87705 5.90664 6.00449 6.17163 6.36780 6.45637 6.64644 6.80642 6.82804 6.98357 7.07021 7.21076 7.22955 7.33919 7.58893 7.66114 7.72825 7.87960 8.47891 8.87663 9.56008 10.59839 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.024997 B = 0.001319 C = 0.001258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.851782 B =21225.630417 C =22250.313722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.506 3.494 3 O -0.514 6.514 4 N -0.677 5.677 5 C 0.138 3.862 6 C -0.122 4.122 7 C -0.105 4.105 8 C -0.104 4.104 9 C -0.106 4.106 10 C 0.573 3.427 11 O -0.497 6.497 12 N -0.582 5.582 13 N -0.265 5.265 14 C 0.151 3.849 15 C -0.174 4.174 16 C -0.025 4.025 17 C -0.201 4.201 18 C 0.169 3.831 19 O -0.166 6.166 20 C -0.392 4.392 21 H 0.097 0.903 22 C 0.040 3.960 23 N -0.854 5.854 24 Si 0.944 3.056 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.241 4.241 29 C -0.034 4.034 30 C -0.061 4.061 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.413 0.587 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.377 0.623 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.272 0.728 43 H 0.132 0.868 44 H 0.113 0.887 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.028 -24.259 -17.557 35.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.294 3.706 3 O -0.388 6.388 4 N -0.323 5.323 5 C 0.044 3.956 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.123 4.123 9 C -0.111 4.111 10 C 0.359 3.641 11 O -0.370 6.370 12 N -0.324 5.324 13 N -0.070 5.070 14 C -0.057 4.057 15 C -0.178 4.178 16 C -0.045 4.045 17 C -0.220 4.220 18 C 0.113 3.887 19 O -0.067 6.067 20 C -0.468 4.468 21 H 0.114 0.886 22 C -0.165 4.165 23 N -0.487 5.487 24 Si 0.768 3.232 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.261 4.261 29 C -0.055 4.055 30 C -0.082 4.082 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.249 0.751 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.216 0.784 39 H 0.124 0.876 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.082 0.918 43 H 0.149 0.851 44 H 0.131 0.869 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.107 -22.108 -16.612 34.191 hybrid contribution 1.723 -1.475 -0.714 2.378 sum -18.384 -23.584 -17.325 34.559 Atomic orbital electron populations 1.21893 0.90336 1.05340 1.05395 1.21131 0.91105 0.83115 0.75257 1.90842 1.70387 1.31052 1.46525 1.43658 1.04882 1.10149 1.73636 1.17596 0.83174 0.97457 0.97359 1.21084 0.94246 0.99621 0.99321 1.20879 0.93738 0.98789 0.98907 1.21314 0.99798 0.94255 0.96958 1.19716 0.93851 0.96834 1.00695 1.17879 0.80323 0.84763 0.81086 1.90818 1.64673 1.36956 1.44558 1.46775 1.06902 1.29251 1.49422 1.75161 1.10785 1.09632 1.11441 1.24450 0.90353 0.96175 0.94711 1.17781 0.92509 0.99674 1.07809 1.20929 0.99294 0.91690 0.92576 1.20200 0.91749 1.03325 1.06741 1.19615 0.91979 0.87557 0.89578 1.83963 1.21912 1.44375 1.56418 1.21468 0.78045 1.23556 1.23715 0.88608 1.25370 1.00862 0.95318 0.94978 1.70054 1.36490 1.20576 1.21571 0.85599 0.80189 0.78728 0.78652 1.18931 1.20006 1.20015 1.21042 1.00773 0.98768 1.05501 1.20775 0.92368 0.96604 0.95711 1.21227 0.93221 0.98144 0.95565 0.88198 0.88303 0.89913 0.75115 0.85099 0.84714 0.85488 0.78428 0.87577 0.85614 0.86075 0.91765 0.85055 0.86893 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.31 36.00 0.37 -0.17 16 2 C 0.51 3.98 7.67 -10.99 -0.08 3.90 16 3 O -0.51 -6.92 14.81 5.55 0.08 -6.84 16 4 N -0.68 -3.94 5.34 -9.90 -0.05 -3.99 16 5 C 0.14 1.17 6.27 -83.74 -0.52 0.64 16 6 C -0.12 -0.73 9.96 -39.31 -0.39 -1.12 16 7 C -0.10 -0.62 10.02 -39.67 -0.40 -1.01 16 8 C -0.10 -0.82 9.54 -39.15 -0.37 -1.19 16 9 C -0.11 -1.24 5.87 -105.00 -0.62 -1.85 16 10 C 0.57 8.81 7.89 -12.35 -0.10 8.71 16 11 O -0.50 -9.96 16.68 5.29 0.09 -9.87 16 12 N -0.58 -7.96 6.21 30.52 0.19 -7.77 16 13 N -0.26 -4.41 10.15 32.14 0.33 -4.09 16 14 C 0.15 2.21 10.75 -14.69 -0.16 2.06 16 15 C -0.17 -3.03 5.87 -105.01 -0.62 -3.65 16 16 C -0.02 -0.48 9.57 -39.18 -0.37 -0.85 16 17 C -0.20 -4.31 9.97 -39.46 -0.39 -4.71 16 18 C 0.17 3.99 6.65 -38.96 -0.26 3.74 16 19 O -0.17 -4.61 9.75 0.43 0.00 -4.61 16 20 C -0.39 -10.55 9.43 30.88 0.29 -10.26 16 21 H 0.10 2.35 5.28 -52.48 -0.28 2.08 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.85 -24.38 13.67 55.48 0.76 -23.62 16 24 Si 0.94 19.76 29.55 -169.99 -5.02 14.74 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 28 C -0.24 -4.96 9.11 -39.46 -0.36 -5.32 16 29 C -0.03 -0.58 9.78 -39.18 -0.38 -0.96 16 30 C -0.06 -0.73 8.19 -38.97 -0.32 -1.05 16 31 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.41 0.68 8.82 -40.82 -0.36 0.32 16 35 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 36 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 37 H 0.13 0.68 6.40 -52.48 -0.34 0.35 16 38 H 0.38 3.54 6.68 -182.59 -1.22 2.32 16 39 H 0.11 1.13 8.02 -52.49 -0.42 0.71 16 40 H 0.13 2.40 7.55 -52.48 -0.40 2.00 16 41 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.13 2.65 5.70 -52.48 -0.30 2.35 16 44 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 45 H 0.15 2.20 6.04 -52.48 -0.32 1.88 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -38.17 399.28 -8.11 -46.28 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.72 Total: 5.86 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -4.78 Total: -12.12 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 1.22 Total: -39.47 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: 0.17 Total: -21.32 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.17 -8.11 -46.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006563037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.939 kcal (2) G-P(sol) polarization free energy of solvation -38.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds