Wall clock time and date at job start Tue Mar 31 2020 06:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50700 * 109.46765 * 2 1 4 4 C 1.38132 * 120.03734 * 265.24906 * 3 2 1 5 5 C 1.38261 * 120.07177 * 180.30060 * 4 3 2 6 6 C 1.38307 * 120.14911 * 359.73107 * 5 4 3 7 7 C 1.38082 * 120.07348 * 359.97438 * 6 5 4 8 8 C 1.38879 * 120.03659 * 85.00376 * 3 2 1 9 9 N 1.39812 * 120.07582 * 359.96811 * 8 3 2 10 10 C 1.34772 * 120.00216 * 154.87145 * 9 8 3 11 11 O 1.21736 * 119.99876 * 354.33116 * 10 9 8 12 12 C 1.46208 * 120.00195 * 174.61317 * 10 9 8 13 13 C 1.35052 * 120.00134 * 180.02562 * 12 10 9 14 14 C 1.46959 * 119.99745 * 179.97438 * 13 12 10 15 15 C 1.40029 * 120.08212 * 359.97438 * 14 13 12 16 16 C 1.37646 * 120.00038 * 179.97438 * 15 14 13 17 17 C 1.39064 * 120.16032 * 0.02562 * 16 15 14 18 18 O 1.35613 * 119.91530 * 180.02562 * 17 16 15 19 19 C 1.34752 * 117.00372 * 5.14643 * 18 17 16 20 20 H 1.08000 * 120.00257 * 354.97936 * 19 18 17 21 21 C 1.38714 * 120.00199 * 174.98314 * 19 18 17 22 22 N 1.31521 * 119.99563 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00217 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47099 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46934 * 119.99966 * 23 21 19 26 26 H 1.48497 * 109.47054 * 240.00160 * 23 21 19 27 27 C 1.39623 * 120.15844 * 359.97438 * 17 16 15 28 28 O 1.35957 * 119.99778 * 179.97438 * 27 17 16 29 29 C 1.42894 * 116.99611 * 179.97438 * 28 27 17 30 30 C 1.38071 * 119.99785 * 359.74209 * 27 17 16 31 31 H 1.08996 * 109.47132 * 60.00261 * 1 2 3 32 32 H 1.08999 * 109.46916 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46799 * 300.00007 * 1 2 3 34 34 H 1.08996 * 109.46799 * 239.99993 * 2 1 3 35 35 H 1.08996 * 109.47132 * 119.99739 * 2 1 3 36 36 H 1.08001 * 119.96428 * 0.02983 * 4 3 2 37 37 H 1.08006 * 119.92682 * 179.74320 * 5 4 3 38 38 H 1.08002 * 119.96504 * 180.02562 * 6 5 4 39 39 H 1.08000 * 120.03584 * 179.97438 * 7 6 5 40 40 H 0.96995 * 119.99874 * 334.87459 * 9 8 3 41 41 H 1.08003 * 120.00216 * 359.97438 * 12 10 9 42 42 H 1.07995 * 119.99934 * 359.97438 * 13 12 10 43 43 H 1.08004 * 119.99917 * 359.96226 * 15 14 13 44 44 H 1.08000 * 119.91699 * 180.02562 * 16 15 14 45 45 H 0.97004 * 119.99489 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.47689 * 299.99987 * 29 28 27 47 47 H 1.08998 * 109.47162 * 60.00786 * 29 28 27 48 48 H 1.09000 * 109.46918 * 180.02562 * 29 28 27 49 49 H 1.08007 * 120.07973 * 180.26029 * 30 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3562 2.0397 -1.1917 5 6 2.8229 3.3412 -1.1920 6 6 2.9619 4.0296 -0.0005 7 6 2.6343 3.4189 1.1938 8 6 2.1653 2.1112 1.1977 9 7 1.8329 1.4897 2.4052 10 6 2.4005 1.9044 3.5551 11 8 3.2775 2.7483 3.5313 12 6 1.9674 1.3361 4.8307 13 6 2.5358 1.7520 5.9830 14 6 2.0999 1.1812 7.2652 15 6 1.0950 0.2064 7.2941 16 6 0.6884 -0.3275 8.4958 17 6 1.2729 0.0991 9.6834 18 8 0.8689 -0.4306 10.8646 19 6 -0.0236 -1.4387 10.8096 20 1 -0.4455 -1.7353 9.8607 21 6 -0.4005 -2.0955 11.9718 22 7 0.1136 -1.7346 13.1273 23 14 -1.6383 -3.4925 11.8958 24 1 -2.0631 -3.7013 10.4882 25 1 -1.0138 -4.7359 12.4146 26 1 -2.8224 -3.1503 12.7240 27 6 2.2755 1.0707 9.6623 28 8 2.8443 1.4858 10.8253 29 6 3.8642 2.4820 10.7292 30 6 2.6924 1.6064 8.4600 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.2488 1.5050 -2.1239 37 1 3.0793 3.8214 -2.1248 38 1 3.3264 5.0462 -0.0043 39 1 2.7435 3.9568 2.1239 40 1 1.1939 0.7601 2.4154 41 1 1.1922 0.5843 4.8516 42 1 3.3106 2.5040 5.9623 43 1 0.6389 -0.1264 6.3734 44 1 -0.0864 -1.0795 8.5165 45 1 -0.1497 -2.1941 13.9400 46 1 4.6853 2.1039 10.1201 47 1 3.4528 3.3797 10.2677 48 1 4.2327 2.7221 11.7265 49 1 3.4708 2.3550 8.4418 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006647146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:59 Heat of formation + Delta-G solvation = -32.133469 kcal Electronic energy + Delta-G solvation = -30993.263287 eV Core-core repulsion = 26658.901021 eV Total energy + Delta-G solvation = -4334.362267 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.78826 -39.76896 -38.71937 -37.73248 -36.63510 -35.11757 -34.03209 -33.15777 -32.33699 -30.24039 -29.80037 -29.44140 -28.48092 -26.61660 -25.64205 -24.30750 -24.04507 -22.63445 -21.82417 -21.16305 -20.75205 -19.37799 -18.28046 -17.86786 -17.74055 -16.99638 -16.26218 -15.93875 -15.62038 -15.39169 -15.25056 -14.88289 -14.72411 -14.50642 -14.25579 -14.07024 -14.03462 -13.87250 -13.65439 -13.55504 -13.50988 -13.27882 -12.48157 -12.43517 -12.25076 -12.15698 -11.89275 -11.86538 -11.75959 -11.51635 -11.28204 -11.18533 -11.16349 -11.09513 -10.84708 -10.73020 -10.58254 -10.53523 -9.79178 -9.63924 -9.49070 -8.91895 -8.90569 -8.15713 -8.02856 -6.97851 -6.67862 -4.18424 0.78839 1.20863 1.30626 2.06037 2.44762 3.00970 3.01554 3.01951 3.08231 3.35780 3.72379 3.78112 3.89712 4.40482 4.46216 4.57180 4.72654 4.84388 4.89165 4.94597 4.96247 5.03287 5.12007 5.15343 5.25639 5.34883 5.37922 5.45531 5.50856 5.51336 5.53210 5.58996 5.63854 5.65982 5.79525 5.85322 5.92627 5.93494 6.10203 6.15911 6.25607 6.34172 6.37573 6.40514 6.45269 6.50297 6.77472 6.92867 6.93760 7.03016 7.18738 7.34246 7.41387 7.72770 8.02466 8.11380 8.75173 9.43543 10.47779 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.001796 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.954614 B =15586.254451 C =17698.329945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.120 4.120 4 C -0.099 4.099 5 C -0.143 4.143 6 C -0.104 4.104 7 C -0.131 4.131 8 C 0.160 3.840 9 N -0.672 5.672 10 C 0.555 3.445 11 O -0.537 6.537 12 C -0.287 4.287 13 C 0.047 3.953 14 C -0.171 4.171 15 C -0.056 4.056 16 C -0.226 4.226 17 C 0.150 3.850 18 O -0.145 6.145 19 C -0.390 4.390 20 H 0.099 0.901 21 C 0.041 3.959 22 N -0.842 5.842 23 Si 0.946 3.054 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.273 1.273 27 C 0.052 3.948 28 O -0.303 6.303 29 C 0.030 3.970 30 C -0.134 4.134 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.146 0.854 40 H 0.410 0.590 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.138 0.862 45 H 0.274 0.726 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.092 0.908 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.183 5.242 -22.417 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.162 4.162 6 C -0.123 4.123 7 C -0.151 4.151 8 C 0.065 3.935 9 N -0.315 5.315 10 C 0.350 3.650 11 O -0.416 6.416 12 C -0.308 4.308 13 C 0.027 3.973 14 C -0.173 4.173 15 C -0.074 4.074 16 C -0.246 4.246 17 C 0.092 3.908 18 O -0.045 6.045 19 C -0.465 4.465 20 H 0.116 0.884 21 C -0.166 4.166 22 N -0.474 5.474 23 Si 0.770 3.230 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.199 1.199 27 C 0.007 3.993 28 O -0.217 6.217 29 C -0.066 4.066 30 C -0.154 4.154 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.164 0.836 40 H 0.247 0.753 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.155 0.845 45 H 0.085 0.915 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.111 0.889 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.753 5.710 -21.593 22.505 hybrid contribution -0.759 -0.883 -0.259 1.193 sum 1.994 4.827 -21.852 22.468 Atomic orbital electron populations 1.21795 0.94650 1.01973 1.02306 1.20488 0.96129 0.92564 1.03151 1.19617 1.04261 0.96251 0.92126 1.20785 0.99190 0.95065 0.96699 1.21068 1.01993 0.95128 0.98042 1.21054 0.99361 0.99846 0.92029 1.21466 1.00588 0.93239 0.99817 1.17658 0.99052 0.91940 0.84856 1.43518 1.45199 1.37345 1.05389 1.18548 0.80694 0.81612 0.84177 1.90746 1.30551 1.33023 1.87317 1.22341 1.08532 1.08888 0.91025 1.22264 0.92337 0.91888 0.90789 1.18136 1.03511 1.04203 0.91434 1.20934 0.95022 0.94508 0.96980 1.20833 1.06010 1.06742 0.90991 1.18895 0.91977 0.92688 0.87200 1.83984 1.52428 1.43925 1.24197 1.21591 1.19197 1.09728 0.96020 0.88373 1.25441 0.98377 0.98665 0.94123 1.70058 1.39845 1.39074 0.98392 0.85570 0.79029 0.79273 0.79154 1.18790 1.19859 1.19875 1.18040 0.96868 0.99079 0.85334 1.86238 1.51659 1.55804 1.28007 1.22923 0.90036 0.90553 1.03086 1.20881 1.01816 1.01872 0.90815 0.92282 0.92050 0.92740 0.90622 0.91147 0.86017 0.86267 0.85969 0.83615 0.75343 0.85531 0.85844 0.86589 0.84456 0.91544 0.93415 0.93423 0.88930 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.81 37.16 0.36 -0.59 16 2 C -0.09 -0.63 5.44 -27.88 -0.15 -0.79 16 3 C -0.12 -1.16 5.15 -104.42 -0.54 -1.70 16 4 C -0.10 -0.88 9.68 -39.61 -0.38 -1.26 16 5 C -0.14 -1.29 10.04 -39.55 -0.40 -1.69 16 6 C -0.10 -1.08 10.04 -39.61 -0.40 -1.47 16 7 C -0.13 -1.63 8.71 -39.38 -0.34 -1.98 16 8 C 0.16 1.88 6.41 -83.73 -0.54 1.34 16 9 N -0.67 -7.50 4.98 -11.18 -0.06 -7.55 16 10 C 0.56 7.60 7.54 -13.06 -0.10 7.50 16 11 O -0.54 -8.84 13.40 5.16 0.07 -8.77 16 12 C -0.29 -3.75 9.41 -37.52 -0.35 -4.10 16 13 C 0.05 0.68 9.45 -37.18 -0.35 0.33 16 14 C -0.17 -2.85 5.87 -105.04 -0.62 -3.47 16 15 C -0.06 -0.95 9.40 -39.13 -0.37 -1.32 16 16 C -0.23 -4.54 9.14 -39.49 -0.36 -4.91 16 17 C 0.15 3.49 6.67 -38.76 -0.26 3.23 16 18 O -0.14 -3.99 9.52 -13.92 -0.13 -4.12 16 19 C -0.39 -10.26 9.48 30.91 0.29 -9.97 16 20 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.84 -23.56 13.67 55.48 0.76 -22.80 16 23 Si 0.95 19.19 29.55 -169.99 -5.02 14.16 16 24 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 C 0.05 1.09 6.70 -39.13 -0.26 0.83 16 28 O -0.30 -6.34 10.28 -34.22 -0.35 -6.69 16 29 C 0.03 0.43 9.81 101.05 0.99 1.42 16 30 C -0.13 -2.35 8.77 -38.99 -0.34 -2.69 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.36 7.44 -51.93 -0.39 -0.02 16 34 H 0.08 0.48 8.05 -51.93 -0.42 0.06 16 35 H 0.07 0.53 7.27 -51.93 -0.38 0.15 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.15 2.05 5.79 -52.49 -0.30 1.75 16 40 H 0.41 3.51 6.73 -40.82 -0.27 3.24 16 41 H 0.13 1.41 6.06 -52.48 -0.32 1.09 16 42 H 0.12 1.75 7.52 -52.49 -0.39 1.36 16 43 H 0.12 1.59 6.15 -52.48 -0.32 1.27 16 44 H 0.14 2.68 5.61 -52.49 -0.29 2.39 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 47 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 49 H 0.12 1.81 6.28 -52.48 -0.33 1.48 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -31.97 410.05 -8.92 -40.89 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.16 Total: 9.02 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -4.21 Total: -20.32 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.70 Total: -30.35 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.42 Total: -19.59 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.97 -8.92 -40.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006647146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.760 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds