Wall clock time and date at job start Tue Mar 31 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35945 * 116.99764 * 2 1 4 4 C 1.38074 * 120.00544 * 0.02562 * 3 2 1 5 5 C 1.39982 * 119.84194 * 179.97438 * 4 3 2 6 6 C 1.46959 * 120.07722 * 179.97438 * 5 4 3 7 7 C 1.35045 * 119.99931 * 180.02562 * 6 5 4 8 8 C 1.46210 * 120.00293 * 180.02562 * 7 6 5 9 9 O 1.21740 * 119.99955 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00282 * 180.02562 * 8 7 6 11 11 C 1.39812 * 120.00033 * 174.44920 * 10 8 7 12 12 C 1.38914 * 120.07555 * 335.15006 * 11 10 8 13 13 C 1.38090 * 119.93099 * 180.02562 * 12 11 10 14 14 C 1.38303 * 120.06918 * 359.97438 * 13 12 11 15 15 C 1.38268 * 120.14786 * 0.02765 * 14 13 12 16 16 C 1.50707 * 119.96039 * 180.02562 * 15 14 13 17 17 C 1.38127 * 120.07635 * 359.71367 * 15 14 13 18 18 C 1.50693 * 120.04052 * 180.30617 * 17 15 14 19 19 C 1.40034 * 119.84382 * 359.97438 * 5 4 3 20 20 C 1.37647 * 119.99306 * 0.02562 * 19 5 4 21 21 C 1.39054 * 120.16930 * 0.25557 * 20 19 5 22 22 O 1.35611 * 119.92308 * 179.72327 * 21 20 19 23 23 C 1.34751 * 117.00170 * 5.16724 * 22 21 20 24 24 H 1.08004 * 120.00174 * 354.98631 * 23 22 21 25 25 C 1.38707 * 120.00156 * 174.98211 * 23 22 21 26 26 N 1.31525 * 120.00035 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 119.99928 * 0.02562 * 25 23 22 28 28 H 1.48506 * 109.47062 * 90.00022 * 27 25 23 29 29 H 1.48502 * 109.47229 * 209.99938 * 27 25 23 30 30 H 1.48494 * 109.47291 * 329.99656 * 27 25 23 31 31 H 1.09001 * 109.46956 * 59.99842 * 1 2 3 32 32 H 1.09005 * 109.46840 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47016 * 299.99639 * 1 2 3 34 34 H 1.08002 * 120.07660 * 359.95568 * 4 3 2 35 35 H 1.08005 * 120.00068 * 0.02562 * 6 5 4 36 36 H 1.08005 * 120.00001 * 0.02562 * 7 6 5 37 37 H 0.96999 * 120.00181 * 354.43938 * 10 8 7 38 38 H 1.08000 * 120.03707 * 359.97438 * 12 11 10 39 39 H 1.08002 * 119.96460 * 179.97438 * 13 12 11 40 40 H 1.07997 * 119.92621 * 180.02562 * 14 13 12 41 41 H 1.08993 * 109.47105 * 89.99545 * 16 15 14 42 42 H 1.09006 * 109.46905 * 209.99373 * 16 15 14 43 43 H 1.08998 * 109.47452 * 329.98863 * 16 15 14 44 44 H 1.09004 * 109.47201 * 270.23400 * 18 17 15 45 45 H 1.09000 * 109.47346 * 30.23009 * 18 17 15 46 46 H 1.08996 * 109.47611 * 150.23708 * 18 17 15 47 47 H 1.07998 * 120.00109 * 180.02562 * 19 5 4 48 48 H 1.08005 * 119.91468 * 179.97438 * 20 19 5 49 49 H 0.96994 * 120.00144 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3693 0.0005 5 6 1.9333 3.6148 0.0011 6 6 1.1380 4.8506 0.0011 7 6 1.7561 6.0513 0.0011 8 6 0.9650 7.2809 0.0016 9 8 -0.2510 7.2223 0.0016 10 7 1.5819 8.4792 0.0011 11 6 0.8303 9.6523 -0.1155 12 6 -0.4160 9.6226 -0.7284 13 6 -1.1556 10.7832 -0.8424 14 6 -0.6570 11.9741 -0.3466 15 6 0.5831 12.0072 0.2640 16 6 1.1221 13.3072 0.8032 17 6 1.3257 10.8490 0.3860 18 6 2.6742 10.8846 1.0578 19 6 3.3321 3.6803 0.0016 20 6 4.0752 2.5217 0.0011 21 6 3.4406 1.2844 -0.0054 22 8 4.1776 0.1461 -0.0115 23 6 5.5139 0.2819 0.0971 24 1 5.9580 1.2664 0.1022 25 6 6.3190 -0.8427 0.2023 26 7 7.6232 -0.7101 0.3088 27 14 5.5510 -2.5454 0.1928 28 1 5.4660 -3.0423 -1.2041 29 1 6.3887 -3.4708 0.9972 30 1 4.1878 -2.4768 0.7777 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2156 2.3143 0.0002 35 1 0.0592 4.7986 0.0011 36 1 2.8349 6.1033 0.0007 37 1 2.5473 8.5277 0.0818 38 1 -0.8058 8.6930 -1.1161 39 1 -2.1244 10.7608 -1.3192 40 1 -1.2375 12.8803 -0.4367 41 1 0.8103 13.4273 1.8406 42 1 2.2108 13.2992 0.7496 43 1 0.7352 14.1352 0.2092 44 1 3.4451 11.0880 0.3145 45 1 2.6827 11.6695 1.8141 46 1 2.8702 9.9223 1.5306 47 1 3.8277 4.6399 0.0025 48 1 5.1540 2.5737 0.0011 49 1 8.1862 -1.4965 0.3828 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006648277.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:20 Heat of formation + Delta-G solvation = -29.893017 kcal Electronic energy + Delta-G solvation = -30873.227256 eV Core-core repulsion = 26538.962142 eV Total energy + Delta-G solvation = -4334.265114 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.81600 -39.92622 -38.90623 -37.91694 -36.78621 -35.11908 -33.61622 -33.15243 -32.49360 -31.04717 -29.89985 -28.97390 -27.65822 -26.75120 -26.55688 -25.58504 -24.01491 -22.31223 -21.71517 -21.39356 -20.45409 -19.45368 -18.20588 -17.99791 -17.66109 -16.90115 -16.30315 -15.94407 -15.79712 -15.51938 -15.40683 -14.89895 -14.65437 -14.42163 -14.35509 -14.11585 -14.00905 -13.86427 -13.67474 -13.33540 -13.18345 -13.11169 -12.82264 -12.58036 -12.41916 -12.35733 -12.18250 -12.01947 -11.98343 -11.66348 -11.62657 -11.22801 -11.16192 -11.04138 -10.93683 -10.79374 -10.54030 -10.33181 -9.81076 -9.65372 -9.53655 -8.95834 -8.72315 -8.18469 -8.09500 -7.11684 -6.63413 -4.22896 0.72301 1.18915 1.26314 1.95287 2.36173 2.98212 3.14072 3.17469 3.29817 3.35645 3.67803 3.74034 4.11048 4.31715 4.50342 4.52758 4.60800 4.72703 4.81548 4.89922 4.91033 5.06311 5.11356 5.22454 5.25948 5.30043 5.33259 5.38154 5.38861 5.41984 5.43506 5.49836 5.57490 5.60072 5.67036 5.71749 5.81528 5.93089 6.00525 6.08650 6.25032 6.30570 6.31482 6.39688 6.43348 6.43972 6.69569 6.84362 6.92904 7.08151 7.25944 7.31658 7.44506 7.73437 7.93311 8.07511 8.69803 9.31249 10.42025 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.001641 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.613518 B =17054.990171 C =18548.406209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.052 3.948 4 C -0.135 4.135 5 C -0.161 4.161 6 C 0.042 3.958 7 C -0.278 4.278 8 C 0.555 3.445 9 O -0.536 6.536 10 N -0.671 5.671 11 C 0.160 3.840 12 C -0.135 4.135 13 C -0.101 4.101 14 C -0.142 4.142 15 C -0.069 4.069 16 C -0.114 4.114 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.060 4.060 20 C -0.211 4.211 21 C 0.156 3.844 22 O -0.187 6.187 23 C -0.388 4.388 24 H 0.112 0.888 25 C 0.067 3.933 26 N -0.863 5.863 27 Si 0.905 3.095 28 H -0.271 1.271 29 H -0.280 1.280 30 H -0.253 1.253 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.411 0.589 38 H 0.146 0.854 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.119 0.881 48 H 0.144 0.856 49 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.273 20.653 -0.227 24.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.007 3.993 4 C -0.154 4.154 5 C -0.162 4.162 6 C 0.022 3.978 7 C -0.299 4.299 8 C 0.349 3.651 9 O -0.415 6.415 10 N -0.313 5.313 11 C 0.065 3.935 12 C -0.155 4.155 13 C -0.120 4.120 14 C -0.161 4.161 15 C -0.070 4.070 16 C -0.170 4.170 17 C -0.126 4.126 18 C -0.173 4.173 19 C -0.078 4.078 20 C -0.230 4.230 21 C 0.101 3.899 22 O -0.089 6.089 23 C -0.462 4.462 24 H 0.129 0.871 25 C -0.139 4.139 26 N -0.498 5.498 27 Si 0.729 3.271 28 H -0.196 1.196 29 H -0.206 1.206 30 H -0.177 1.177 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.247 0.753 38 H 0.163 0.837 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.137 0.863 48 H 0.162 0.838 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.789 19.942 -0.225 23.692 hybrid contribution 0.205 -0.482 0.021 0.524 sum -12.584 19.460 -0.204 23.175 Atomic orbital electron populations 1.22943 0.79835 1.03188 1.00677 1.86180 1.19908 1.26332 1.89858 1.18031 0.89250 0.84664 1.07381 1.20894 0.98736 0.90829 1.04939 1.18212 0.92838 0.91406 1.13721 1.22267 0.99266 0.90869 0.85420 1.22406 1.00004 0.91232 1.16295 1.18532 0.87789 0.83652 0.75105 1.90751 1.14086 1.87287 1.49386 1.43482 1.10780 1.04462 1.72618 1.17624 0.93099 0.85419 0.97374 1.21432 0.94236 0.99931 0.99908 1.21023 0.99588 0.92121 0.99280 1.20951 0.95809 0.98114 1.01242 1.19514 0.94375 0.94444 0.98656 1.20805 1.01327 0.93923 1.00988 1.19442 0.98457 0.92165 1.02570 1.20754 0.93382 1.02950 1.00212 1.20991 0.92399 0.97612 0.96845 1.20974 1.01281 0.90506 1.10277 1.18633 0.87717 0.87031 0.96515 1.83581 1.20434 1.27606 1.77290 1.20920 0.77000 0.97233 1.51089 0.87119 1.24533 0.94544 0.99807 0.94978 1.69620 1.03112 1.32144 1.44967 0.86165 0.80435 0.81352 0.79122 1.19600 1.20576 1.17658 0.93243 0.88907 0.93225 0.85612 0.85709 0.85357 0.75260 0.83657 0.85928 0.86279 0.91196 0.91335 0.91559 0.91126 0.90896 0.91719 0.86293 0.83823 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.31 -5.91 10.28 -34.18 -0.35 -6.26 16 3 C 0.05 1.01 6.70 -39.12 -0.26 0.75 16 4 C -0.13 -2.21 8.77 -38.99 -0.34 -2.56 16 5 C -0.16 -2.55 5.87 -105.04 -0.62 -3.17 16 6 C 0.04 0.58 9.45 -37.19 -0.35 0.22 16 7 C -0.28 -3.51 9.41 -37.52 -0.35 -3.86 16 8 C 0.56 7.41 7.54 -13.06 -0.10 7.31 16 9 O -0.54 -8.66 13.39 5.15 0.07 -8.59 16 10 N -0.67 -7.34 4.96 -11.18 -0.06 -7.40 16 11 C 0.16 1.88 6.41 -83.73 -0.54 1.34 16 12 C -0.13 -1.69 8.71 -39.39 -0.34 -2.03 16 13 C -0.10 -1.06 10.04 -39.61 -0.40 -1.45 16 14 C -0.14 -1.32 9.70 -39.55 -0.38 -1.70 16 15 C -0.07 -0.63 5.88 -104.65 -0.62 -1.25 16 16 C -0.11 -0.71 9.18 36.01 0.33 -0.38 16 17 C -0.12 -1.22 5.90 -104.43 -0.62 -1.84 16 18 C -0.12 -0.83 8.62 36.00 0.31 -0.52 16 19 C -0.06 -0.99 9.40 -39.12 -0.37 -1.36 16 20 C -0.21 -4.18 9.14 -39.49 -0.36 -4.54 16 21 C 0.16 3.47 6.67 -38.76 -0.26 3.21 16 22 O -0.19 -4.77 8.35 -13.91 -0.12 -4.88 16 23 C -0.39 -10.33 9.94 30.91 0.31 -10.02 16 24 H 0.11 2.95 5.41 -52.48 -0.28 2.66 16 25 C 0.07 1.80 5.49 -17.51 -0.10 1.70 16 26 N -0.86 -23.56 13.96 55.48 0.77 -22.79 16 27 Si 0.90 20.93 28.62 -169.99 -4.86 16.06 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H -0.25 -6.00 7.11 56.52 0.40 -5.60 16 31 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 34 H 0.13 1.70 6.28 -52.49 -0.33 1.37 16 35 H 0.13 1.69 7.52 -52.48 -0.39 1.29 16 36 H 0.13 1.37 6.06 -52.48 -0.32 1.06 16 37 H 0.41 3.34 7.40 -40.82 -0.30 3.03 16 38 H 0.15 2.03 5.79 -52.49 -0.30 1.73 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.37 6.72 -51.93 -0.35 0.02 16 43 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.45 6.72 -51.93 -0.35 0.10 16 46 H 0.06 0.45 6.99 -51.93 -0.36 0.09 16 47 H 0.12 1.60 6.15 -52.49 -0.32 1.28 16 48 H 0.14 2.92 5.61 -52.48 -0.29 2.62 16 49 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 406.42 15.07 6.12 6.12 Total: -1.00 -31.23 406.42 -8.55 -39.78 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.07 Total: 6.73 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -4.06 Total: -18.77 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.72 Total: -30.19 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.40 Total: -19.74 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.86 Total: 16.06 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.23 -8.55 -39.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006648277.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.887 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds