Wall clock time and date at job start Tue Mar 31 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35957 * 116.99658 * 2 1 4 4 C 1.38070 * 120.00235 * 359.97438 * 3 2 1 5 5 C 1.39983 * 119.83990 * 180.02562 * 4 3 2 6 6 C 1.46956 * 120.08026 * 180.02562 * 5 4 3 7 7 C 1.35023 * 120.00180 * 226.55165 * 6 5 4 8 8 C 1.46257 * 119.99712 * 10.70227 * 7 6 5 9 9 O 1.21727 * 120.00040 * 6.99456 * 8 7 6 10 10 N 1.34779 * 120.00041 * 186.98806 * 8 7 6 11 11 C 1.46498 * 120.00052 * 179.97438 * 10 8 7 12 12 H 1.09008 * 109.46801 * 35.00544 * 11 10 8 13 13 C 1.53002 * 109.47350 * 275.00734 * 11 10 8 14 14 C 1.50696 * 109.47405 * 155.00091 * 11 10 8 15 15 C 1.38243 * 119.99456 * 39.72715 * 14 11 10 16 16 C 1.38243 * 119.99549 * 179.78671 * 15 14 11 17 17 C 1.38230 * 119.99809 * 0.44852 * 16 15 14 18 18 C 1.38228 * 120.00409 * 359.80447 * 17 16 15 19 19 C 1.38231 * 120.00292 * 220.00344 * 14 11 10 20 20 C 1.40034 * 119.83819 * 359.69697 * 5 4 3 21 21 C 1.37642 * 120.00155 * 0.57329 * 20 5 4 22 22 C 1.39057 * 120.16214 * 359.45406 * 21 20 5 23 23 O 1.35611 * 119.92281 * 180.27198 * 22 21 20 24 24 C 1.34759 * 116.99985 * 354.19404 * 23 22 21 25 25 H 1.07993 * 120.00225 * 5.06293 * 24 23 22 26 26 C 1.38710 * 119.99846 * 185.06660 * 24 23 22 27 27 N 1.31511 * 120.00335 * 0.02562 * 26 24 23 28 28 Si 1.86800 * 119.99750 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.47023 * 90.00241 * 28 26 24 30 30 H 1.48505 * 109.47021 * 210.00109 * 28 26 24 31 31 H 1.48502 * 109.47297 * 330.00023 * 28 26 24 32 32 H 1.09001 * 109.47214 * 59.99885 * 1 2 3 33 33 H 1.08997 * 109.47200 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47055 * 299.99865 * 1 2 3 35 35 H 1.08001 * 120.08141 * 0.03575 * 4 3 2 36 36 H 1.08005 * 120.00458 * 46.55625 * 6 5 4 37 37 H 1.07997 * 120.00312 * 190.69840 * 7 6 5 38 38 H 0.97000 * 119.99775 * 0.02562 * 10 8 7 39 39 H 1.09003 * 109.46584 * 299.99558 * 13 11 10 40 40 H 1.08997 * 109.47372 * 59.99826 * 13 11 10 41 41 H 1.09000 * 109.46791 * 180.02562 * 13 11 10 42 42 H 1.07993 * 120.00412 * 0.02562 * 15 14 11 43 43 H 1.07994 * 119.99359 * 180.27217 * 16 15 14 44 44 H 1.08007 * 119.99637 * 179.83800 * 17 16 15 45 45 H 1.08007 * 120.00251 * 180.02562 * 18 17 16 46 46 H 1.07994 * 120.00307 * 359.97438 * 19 14 11 47 47 H 1.08001 * 119.99460 * 180.29857 * 20 5 4 48 48 H 1.07998 * 119.91866 * 179.72496 * 21 20 5 49 49 H 0.96998 * 120.00669 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2941 2.3694 -0.0005 5 6 1.9331 3.6148 -0.0011 6 6 1.1379 4.8507 -0.0011 7 6 1.4484 5.8534 -0.8504 8 6 2.4160 5.6290 -1.9240 9 8 2.8452 4.5091 -2.1323 10 7 2.8322 6.6622 -2.6828 11 6 3.8018 6.4375 -3.7578 12 1 3.6219 5.4628 -4.2114 13 6 5.2192 6.4789 -3.1832 14 6 3.6516 7.5131 -4.8026 15 6 3.4153 8.8203 -4.4198 16 6 3.2819 9.8077 -5.3781 17 6 3.3756 9.4864 -6.7193 18 6 3.6067 8.1784 -7.1022 19 6 3.7445 7.1917 -6.1438 20 6 3.3319 3.6803 0.0054 21 6 4.0752 2.5218 0.0003 22 6 3.4405 1.2845 0.0002 23 8 4.1775 0.1462 0.0007 24 6 5.5128 0.2819 -0.1201 25 1 5.9569 1.2662 -0.1295 26 6 6.3168 -0.8428 -0.2327 27 7 5.7760 -2.0415 -0.2219 28 14 8.1677 -0.6547 -0.4009 29 1 8.7894 -0.6504 0.9476 30 1 8.7105 -1.7878 -1.1927 31 1 8.4746 0.6236 -1.0916 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.2155 2.3144 -0.0004 36 1 0.3050 4.9570 0.6783 37 1 0.9824 6.8210 -0.7369 38 1 2.4904 7.5546 -2.5166 39 1 5.3990 7.4537 -2.7297 40 1 5.3278 5.7010 -2.4276 41 1 5.9405 6.3123 -3.9832 42 1 3.3387 9.0707 -3.3721 43 1 3.1017 10.8296 -5.0789 44 1 3.2688 10.2574 -7.4680 45 1 3.6804 7.9274 -8.1501 46 1 3.9251 6.1698 -6.4430 47 1 3.8275 4.6399 0.0098 48 1 5.1539 2.5739 0.0007 49 1 6.3383 -2.8281 -0.3002 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006680711.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:02 Heat of formation + Delta-G solvation = -14.777707 kcal Electronic energy + Delta-G solvation = -32241.651842 eV Core-core repulsion = 27908.042177 eV Total energy + Delta-G solvation = -4333.609664 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.23793 -39.54152 -38.90473 -37.41649 -36.39436 -35.23125 -32.94183 -32.16810 -31.67861 -31.12731 -29.44491 -29.34798 -28.34253 -26.39892 -25.33410 -24.43446 -23.26328 -22.77909 -21.45587 -21.28611 -20.39511 -19.37617 -17.94945 -17.87249 -17.13748 -16.55237 -16.21129 -15.76152 -15.43345 -15.09545 -15.02266 -14.80981 -14.64173 -14.42443 -14.16918 -13.80358 -13.66030 -13.52851 -13.49599 -13.37010 -13.29697 -13.14850 -12.70932 -12.37274 -12.25831 -12.20432 -11.74457 -11.64410 -11.40503 -11.33770 -11.31679 -10.99941 -10.97488 -10.89996 -10.58987 -10.45119 -10.29700 -9.47781 -9.29472 -9.22107 -9.14268 -9.10594 -8.88863 -8.64199 -7.69752 -6.62005 -6.39115 -3.91841 1.03003 1.10042 1.24817 2.36356 2.66986 3.16814 3.18256 3.22906 3.28427 3.54964 3.65548 4.00983 4.14607 4.38233 4.58041 4.65783 4.69717 4.82511 5.05246 5.10933 5.16457 5.16927 5.18607 5.26617 5.29402 5.31931 5.55254 5.58250 5.61499 5.64997 5.69744 5.72694 5.77304 5.86478 5.88469 5.93817 6.12822 6.18628 6.21380 6.24958 6.28775 6.33278 6.47969 6.57745 6.63391 6.69029 6.75203 7.06492 7.19758 7.32649 7.48162 7.68558 7.74412 8.02605 8.31045 8.56745 9.05201 9.78204 10.78057 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.008875 B = 0.002545 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.182760 B =10997.645156 C =13123.337118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.041 3.959 4 C -0.137 4.137 5 C -0.153 4.153 6 C 0.023 3.977 7 C -0.258 4.258 8 C 0.539 3.461 9 O -0.507 6.507 10 N -0.731 5.731 11 C 0.184 3.816 12 H 0.097 0.903 13 C -0.157 4.157 14 C -0.085 4.085 15 C -0.115 4.115 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.108 4.108 20 C -0.015 4.015 21 C -0.219 4.219 22 C 0.151 3.849 23 O -0.159 6.159 24 C -0.387 4.387 25 H 0.093 0.907 26 C 0.039 3.961 27 N -0.855 5.855 28 Si 0.940 3.060 29 H -0.273 1.273 30 H -0.277 1.277 31 H -0.267 1.267 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.393 0.607 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.099 0.901 48 H 0.131 0.869 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.663 22.714 -7.214 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.004 4.004 4 C -0.156 4.156 5 C -0.154 4.154 6 C 0.003 3.997 7 C -0.279 4.279 8 C 0.328 3.672 9 O -0.382 6.382 10 N -0.385 5.385 11 C 0.079 3.921 12 H 0.115 0.885 13 C -0.216 4.216 14 C -0.086 4.086 15 C -0.133 4.133 16 C -0.136 4.136 17 C -0.142 4.142 18 C -0.135 4.135 19 C -0.127 4.127 20 C -0.033 4.033 21 C -0.239 4.239 22 C 0.096 3.904 23 O -0.061 6.061 24 C -0.463 4.463 25 H 0.110 0.890 26 C -0.166 4.166 27 N -0.489 5.489 28 Si 0.765 3.235 29 H -0.199 1.199 30 H -0.202 1.202 31 H -0.191 1.191 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.228 0.772 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.117 0.883 48 H 0.148 0.852 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.219 21.168 -7.369 23.548 hybrid contribution 0.452 0.971 -0.165 1.084 sum -6.767 22.140 -7.534 24.346 Atomic orbital electron populations 1.22846 0.80708 1.02696 1.00075 1.86224 1.19122 1.26503 1.90066 1.17931 0.89355 0.84332 1.08742 1.20644 0.97945 0.90950 1.06073 1.18010 0.92851 0.91190 1.13348 1.22297 0.93598 0.91436 0.92350 1.22642 1.05353 1.00412 0.99526 1.18494 0.81466 0.84522 0.82672 1.91020 1.55945 1.22166 1.69096 1.46130 1.46133 1.11168 1.35106 1.19715 0.89173 0.97343 0.85877 0.88526 1.22157 0.95056 1.02477 1.01870 1.20038 0.99613 0.94531 0.94382 1.20932 1.00465 0.92449 0.99501 1.21125 1.00171 0.99193 0.93120 1.21168 1.00343 0.96549 0.96135 1.21166 0.99719 0.93086 0.99502 1.21086 0.99613 0.99868 0.92120 1.20469 0.91896 0.96484 0.94468 1.20707 1.00253 0.90877 1.12039 1.18794 0.88229 0.87587 0.95830 1.83988 1.19463 1.25681 1.77003 1.21407 0.78691 0.94752 1.51499 0.88969 1.25313 1.00426 0.94235 0.96595 1.70048 1.36138 0.97616 1.45070 0.85724 0.80661 0.78475 0.78654 1.19865 1.20245 1.19107 0.93765 0.89264 0.93760 0.86594 0.86052 0.86154 0.77199 0.92601 0.91061 0.91697 0.86148 0.86033 0.86149 0.85915 0.85655 0.88302 0.85171 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.52 16 2 O -0.30 -7.04 10.28 -34.22 -0.35 -7.39 16 3 C 0.04 0.96 6.70 -39.12 -0.26 0.70 16 4 C -0.14 -2.67 8.77 -38.99 -0.34 -3.01 16 5 C -0.15 -2.82 4.41 -105.04 -0.46 -3.29 16 6 C 0.02 0.32 9.78 -37.20 -0.36 -0.05 16 7 C -0.26 -3.21 9.92 -37.50 -0.37 -3.59 16 8 C 0.54 7.91 6.85 -13.04 -0.09 7.82 16 9 O -0.51 -9.82 12.02 5.17 0.06 -9.76 16 10 N -0.73 -8.24 5.02 -56.37 -0.28 -8.52 16 11 C 0.18 2.12 2.78 -69.08 -0.19 1.92 16 12 H 0.10 1.34 7.44 -51.92 -0.39 0.95 16 13 C -0.16 -1.80 9.46 37.16 0.35 -1.45 16 14 C -0.09 -0.83 4.96 -104.62 -0.52 -1.35 16 15 C -0.12 -0.96 9.06 -39.58 -0.36 -1.32 16 16 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 17 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 18 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 19 C -0.11 -1.03 9.67 -39.58 -0.38 -1.41 16 20 C -0.01 -0.29 6.69 -39.13 -0.26 -0.55 16 21 C -0.22 -5.13 9.14 -39.50 -0.36 -5.49 16 22 C 0.15 3.95 6.67 -38.76 -0.26 3.69 16 23 O -0.16 -4.82 9.52 -13.93 -0.13 -4.95 16 24 C -0.39 -11.26 9.48 30.91 0.29 -10.96 16 25 H 0.09 2.48 5.19 -52.49 -0.27 2.21 16 26 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 27 N -0.85 -25.85 13.67 55.48 0.76 -25.09 16 28 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 29 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 30 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 31 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 32 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 35 H 0.12 1.88 6.28 -52.49 -0.33 1.55 16 36 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.39 3.31 6.83 -40.82 -0.28 3.03 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.12 0.80 6.90 -52.49 -0.36 0.44 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 45 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 46 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 47 H 0.10 1.82 7.31 -52.49 -0.38 1.43 16 48 H 0.13 3.03 5.62 -52.49 -0.29 2.73 16 49 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 411.25 15.07 6.20 6.20 Total: -1.00 -35.97 411.25 -9.12 -45.09 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.46 Total: 8.17 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -3.88 Total: -19.79 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.48 Total: -33.61 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.42 Total: -22.10 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.97 -9.12 -45.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006680711.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.311 kcal (2) G-P(sol) polarization free energy of solvation -35.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds