Wall clock time and date at job start Tue Mar 31 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35955 * 116.99745 * 2 1 4 4 C 1.38079 * 119.99897 * 359.97116 * 3 2 1 5 5 C 1.39983 * 119.83493 * 180.02562 * 4 3 2 6 6 C 1.46956 * 120.07805 * 180.02562 * 5 4 3 7 7 C 1.35054 * 120.00044 * 226.51518 * 6 5 4 8 8 C 1.46213 * 119.99942 * 10.74015 * 7 6 5 9 9 O 1.21734 * 119.99965 * 6.97888 * 8 7 6 10 10 N 1.34776 * 119.99902 * 186.98030 * 8 7 6 11 11 C 1.39810 * 119.99866 * 185.01766 * 10 8 7 12 12 C 1.38926 * 120.07099 * 34.26104 * 11 10 8 13 13 C 1.38088 * 119.92689 * 179.97438 * 12 11 10 14 14 C 1.38313 * 120.07073 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.92454 * 180.02562 * 14 13 12 16 16 C 1.38258 * 120.15010 * 359.97438 * 14 13 12 17 17 C 1.50700 * 119.96878 * 180.02562 * 16 14 13 18 18 C 1.38138 * 120.07373 * 359.72743 * 16 14 13 19 19 C 1.40035 * 119.84547 * 0.02562 * 5 4 3 20 20 C 1.37646 * 119.99646 * 0.02562 * 19 5 4 21 21 C 1.39061 * 120.16158 * 359.97438 * 20 19 5 22 22 O 1.35620 * 119.91866 * 180.02562 * 21 20 19 23 23 C 1.34766 * 116.99673 * 354.19108 * 22 21 20 24 24 H 1.07994 * 120.00136 * 5.06914 * 23 22 21 25 25 C 1.38712 * 119.99726 * 185.07099 * 23 22 21 26 26 N 1.31528 * 119.99708 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99838 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47141 * 90.00062 * 27 25 23 29 29 H 1.48505 * 109.46791 * 209.99631 * 27 25 23 30 30 H 1.48494 * 109.47296 * 329.99518 * 27 25 23 31 31 H 1.09005 * 109.47093 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47314 * 300.00186 * 1 2 3 33 33 H 1.09005 * 109.46770 * 60.00584 * 1 2 3 34 34 H 1.07991 * 120.08243 * 0.04854 * 4 3 2 35 35 H 1.07997 * 120.00489 * 46.50626 * 6 5 4 36 36 H 1.08001 * 119.99963 * 190.74893 * 7 6 5 37 37 H 0.96992 * 119.99950 * 5.02437 * 10 8 7 38 38 H 1.07996 * 120.03756 * 0.02562 * 12 11 10 39 39 H 1.07998 * 119.96334 * 180.02562 * 13 12 11 40 40 H 1.09004 * 109.47123 * 89.99692 * 15 14 13 41 41 H 1.09004 * 109.47014 * 209.99536 * 15 14 13 42 42 H 1.08997 * 109.47197 * 330.00040 * 15 14 13 43 43 H 1.08999 * 109.47253 * 89.99539 * 17 16 14 44 44 H 1.08992 * 109.47329 * 210.00286 * 17 16 14 45 45 H 1.09002 * 109.46893 * 330.00574 * 17 16 14 46 46 H 1.07995 * 120.04138 * 180.27559 * 18 16 14 47 47 H 1.07995 * 120.00357 * 180.29877 * 19 5 4 48 48 H 1.08004 * 119.91450 * 179.97438 * 20 19 5 49 49 H 0.96994 * 119.99396 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2941 2.3694 -0.0006 5 6 1.9331 3.6148 -0.0011 6 6 1.1379 4.8506 -0.0012 7 6 1.4491 5.8538 -0.8502 8 6 2.4163 5.6297 -1.9235 9 8 2.8453 4.5097 -2.1322 10 7 2.8329 6.6630 -2.6819 11 6 3.6757 6.4338 -3.7736 12 6 3.5465 5.2694 -4.5203 13 6 4.3801 5.0463 -5.5983 14 6 5.3433 5.9802 -5.9345 15 6 6.2510 5.7336 -7.1120 16 6 5.4746 7.1400 -5.1935 17 6 6.5251 8.1551 -5.5638 18 6 4.6398 7.3723 -4.1177 19 6 3.3319 3.6804 -0.0016 20 6 4.0752 2.5218 -0.0021 21 6 3.4404 1.2845 -0.0015 22 8 4.1775 0.1462 -0.0015 23 6 5.5128 0.2819 -0.1235 24 1 5.9568 1.2663 -0.1332 25 6 6.3168 -0.8428 -0.2366 26 7 5.7759 -2.0416 -0.2244 27 14 8.1676 -0.6546 -0.4050 28 1 8.7895 -0.6510 0.9434 29 1 8.7102 -1.7875 -1.1973 30 1 8.4744 0.6239 -1.0952 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 0.2156 2.3143 -0.0003 35 1 0.3046 4.9567 0.6775 36 1 0.9835 6.8217 -0.7362 37 1 2.5481 7.5657 -2.4702 38 1 2.7943 4.5400 -4.2585 39 1 4.2799 4.1415 -6.1795 40 1 5.7970 6.1456 -8.0133 41 1 7.2127 6.2157 -6.9366 42 1 6.3996 4.6611 -7.2378 43 1 6.1056 8.8707 -6.2710 44 1 6.8546 8.6805 -4.6675 45 1 7.3749 7.6482 -6.0211 46 1 4.7399 8.2805 -3.5419 47 1 3.8276 4.6399 0.0028 48 1 5.1539 2.5740 -0.0029 49 1 6.3382 -2.8281 -0.3031 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006713468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:24 Heat of formation + Delta-G solvation = -15.906190 kcal Electronic energy + Delta-G solvation = -32513.397981 eV Core-core repulsion = 28179.739381 eV Total energy + Delta-G solvation = -4333.658599 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.52092 -39.52694 -38.78774 -37.44826 -36.34998 -34.94419 -33.06857 -32.48904 -32.11550 -31.49781 -29.45726 -28.58529 -27.55479 -26.56102 -26.00177 -25.27582 -23.51239 -22.30719 -21.58199 -21.43920 -20.19585 -19.32739 -17.97764 -17.86630 -17.03094 -16.59044 -16.12250 -15.60585 -15.38865 -15.16468 -15.05314 -14.68827 -14.41313 -14.26103 -14.20238 -13.92067 -13.72641 -13.42306 -13.38436 -13.28508 -13.07118 -12.91708 -12.71756 -12.60019 -12.24976 -12.09467 -11.93044 -11.66741 -11.47505 -11.37437 -11.30789 -11.06765 -10.99319 -10.91644 -10.59819 -10.46826 -10.32633 -10.03985 -9.52836 -9.33015 -9.16539 -8.71959 -8.65436 -7.92358 -7.69413 -6.66036 -6.41675 -3.94003 1.03483 1.42496 1.45776 2.32764 2.62335 3.16018 3.17541 3.19665 3.22528 3.44692 3.86756 3.99635 4.11665 4.61990 4.72647 4.81941 4.94481 5.02666 5.06272 5.07151 5.13506 5.23606 5.26848 5.37130 5.45982 5.51239 5.54953 5.56911 5.62581 5.67097 5.71946 5.74092 5.80086 5.83810 5.90322 5.91161 6.06289 6.19023 6.26564 6.37904 6.40389 6.45519 6.56300 6.63097 6.68889 6.71204 7.02693 7.12875 7.15835 7.30079 7.44164 7.53893 7.70948 8.00162 8.27979 8.39996 9.02687 9.74639 10.75309 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.006899 B = 0.003297 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4057.608279 B = 8490.612648 C =11354.405515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.041 3.959 4 C -0.135 4.135 5 C -0.160 4.160 6 C 0.031 3.969 7 C -0.263 4.263 8 C 0.536 3.464 9 O -0.488 6.488 10 N -0.680 5.680 11 C 0.155 3.845 12 C -0.118 4.118 13 C -0.095 4.095 14 C -0.109 4.109 15 C -0.114 4.114 16 C -0.072 4.072 17 C -0.114 4.114 18 C -0.150 4.150 19 C -0.013 4.013 20 C -0.220 4.220 21 C 0.152 3.848 22 O -0.157 6.157 23 C -0.388 4.388 24 H 0.093 0.907 25 C 0.040 3.960 26 N -0.854 5.854 27 Si 0.940 3.060 28 H -0.272 1.272 29 H -0.277 1.277 30 H -0.266 1.266 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.405 0.595 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.121 0.879 47 H 0.098 0.902 48 H 0.131 0.869 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 20.280 -7.220 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.004 4.004 4 C -0.154 4.154 5 C -0.161 4.161 6 C 0.012 3.988 7 C -0.284 4.284 8 C 0.327 3.673 9 O -0.361 6.361 10 N -0.325 5.325 11 C 0.061 3.939 12 C -0.139 4.139 13 C -0.114 4.114 14 C -0.110 4.110 15 C -0.170 4.170 16 C -0.073 4.073 17 C -0.171 4.171 18 C -0.170 4.170 19 C -0.032 4.032 20 C -0.239 4.239 21 C 0.097 3.903 22 O -0.059 6.059 23 C -0.464 4.464 24 H 0.111 0.889 25 C -0.165 4.165 26 N -0.487 5.487 27 Si 0.765 3.235 28 H -0.198 1.198 29 H -0.202 1.202 30 H -0.191 1.191 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.240 0.760 38 H 0.152 0.848 39 H 0.142 0.858 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.139 0.861 47 H 0.116 0.884 48 H 0.149 0.851 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.754 18.732 -7.315 20.917 hybrid contribution 0.413 0.875 0.059 0.969 sum -5.342 19.607 -7.256 21.578 Atomic orbital electron populations 1.22852 0.80672 1.02735 1.00076 1.86227 1.19147 1.26460 1.90054 1.17924 0.89336 0.84358 1.08762 1.20637 0.97952 0.90896 1.05938 1.18009 0.92813 0.91223 1.14050 1.22337 0.93353 0.91282 0.91846 1.22554 1.05425 1.00791 0.99653 1.18639 0.81529 0.84474 0.82640 1.91042 1.54248 1.22068 1.68789 1.43584 1.49126 1.11045 1.28745 1.17667 0.92020 0.95940 0.88285 1.21163 1.01054 0.97467 0.94176 1.20931 0.94966 0.98674 0.96784 1.19698 0.98378 0.94612 0.98286 1.20810 0.98316 1.02354 0.95517 1.19454 0.97047 0.95494 0.95274 1.20825 0.97094 0.97355 1.01798 1.20673 0.96119 1.00444 0.99796 1.20477 0.91892 0.96530 0.94291 1.20720 1.00319 0.90872 1.12000 1.18796 0.88235 0.87559 0.95714 1.83989 1.19517 1.25711 1.76686 1.21432 0.78659 0.94818 1.51457 0.88922 1.25322 1.00481 0.94208 0.96492 1.70057 1.36199 0.97630 1.44835 0.85720 0.80566 0.78543 0.78706 1.19802 1.20174 1.19072 0.89236 0.93748 0.93751 0.86526 0.85805 0.85781 0.76014 0.84771 0.85844 0.91544 0.91402 0.91641 0.91340 0.91775 0.91103 0.86099 0.88352 0.85142 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.30 -6.98 10.28 -34.22 -0.35 -7.33 16 3 C 0.04 0.95 6.70 -39.13 -0.26 0.69 16 4 C -0.13 -2.60 8.77 -38.99 -0.34 -2.94 16 5 C -0.16 -2.92 4.42 -105.04 -0.46 -3.38 16 6 C 0.03 0.42 9.78 -37.18 -0.36 0.06 16 7 C -0.26 -3.17 9.92 -37.51 -0.37 -3.54 16 8 C 0.54 7.92 6.61 -13.06 -0.09 7.83 16 9 O -0.49 -9.45 10.07 5.16 0.05 -9.40 16 10 N -0.68 -8.11 5.33 -11.18 -0.06 -8.17 16 11 C 0.16 2.11 6.26 -83.73 -0.52 1.58 16 12 C -0.12 -1.80 8.65 -39.38 -0.34 -2.14 16 13 C -0.09 -1.30 9.69 -39.61 -0.38 -1.69 16 14 C -0.11 -1.32 5.88 -104.59 -0.62 -1.93 16 15 C -0.11 -1.06 9.60 36.01 0.35 -0.71 16 16 C -0.07 -0.82 5.88 -104.65 -0.62 -1.43 16 17 C -0.11 -0.94 9.60 36.01 0.35 -0.59 16 18 C -0.15 -1.75 9.62 -39.38 -0.38 -2.13 16 19 C -0.01 -0.27 6.67 -39.12 -0.26 -0.53 16 20 C -0.22 -5.19 9.14 -39.49 -0.36 -5.55 16 21 C 0.15 3.99 6.67 -38.76 -0.26 3.73 16 22 O -0.16 -4.76 9.52 -13.99 -0.13 -4.89 16 23 C -0.39 -11.32 9.48 30.91 0.29 -11.03 16 24 H 0.09 2.52 5.19 -52.49 -0.27 2.25 16 25 C 0.04 1.14 5.49 -17.51 -0.10 1.05 16 26 N -0.85 -25.80 13.67 55.48 0.76 -25.04 16 27 Si 0.94 21.20 29.55 -169.99 -5.02 16.18 16 28 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 29 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 30 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 33 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 34 H 0.12 1.85 6.28 -52.49 -0.33 1.52 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.40 3.28 8.80 -40.82 -0.36 2.92 16 38 H 0.13 2.29 6.48 -52.49 -0.34 1.95 16 39 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.56 5.94 -51.93 -0.31 0.25 16 42 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 45 H 0.07 0.54 5.94 -51.93 -0.31 0.23 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.10 1.85 7.29 -52.49 -0.38 1.47 16 48 H 0.13 3.10 5.62 -52.48 -0.29 2.80 16 49 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 406.37 15.07 6.12 6.12 Total: -1.00 -36.22 406.37 -8.71 -44.93 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.32 Total: 8.75 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -3.75 Total: -21.15 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.70 Total: -33.20 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.43 Total: -21.62 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.22 -8.71 -44.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006713468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.022 kcal (2) G-P(sol) polarization free energy of solvation -36.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds