Wall clock time and date at job start Tue Mar 31 2020 05:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 O 1.21286 * 120.00016 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00161 * 180.02562 * 3 2 1 6 6 C 1.39837 * 124.97536 * 0.02562 * 5 3 2 7 7 C 1.39630 * 129.33742 * 0.03374 * 6 5 3 8 8 C 1.37847 * 120.28259 * 179.97438 * 7 6 5 9 9 C 1.38292 * 120.22463 * 0.02562 * 8 7 6 10 10 S 1.76200 * 120.08805 * 180.02562 * 9 8 7 11 11 O 1.42093 * 106.40378 * 203.54312 * 10 9 8 12 12 O 1.42103 * 106.39936 * 336.46241 * 10 9 8 13 13 N 1.65597 * 107.21824 * 90.00206 * 10 9 8 14 14 C 1.46496 * 120.00070 * 90.00047 * 13 10 9 15 15 C 1.46499 * 120.00095 * 270.00244 * 13 10 9 16 16 C 1.50698 * 109.47238 * 94.99984 * 15 13 10 17 17 H 1.08005 * 120.00147 * 359.97438 * 16 15 13 18 18 C 1.37880 * 120.00176 * 180.02562 * 16 15 13 19 19 N 1.31515 * 119.99989 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00020 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47052 * 89.99343 * 20 18 16 22 22 H 1.48502 * 109.46975 * 209.99377 * 20 18 16 23 23 H 1.48501 * 109.46933 * 329.99311 * 20 18 16 24 24 C 1.38231 * 119.82789 * 0.02562 * 9 8 7 25 25 C 1.38183 * 120.14766 * 359.96605 * 24 9 8 26 26 C 1.51216 * 130.97087 * 180.02562 * 25 24 9 27 27 C 1.46532 * 124.97977 * 179.72152 * 5 3 2 28 28 H 1.08993 * 110.29701 * 298.92480 * 27 5 3 29 29 C 1.53002 * 110.29745 * 61.06606 * 27 5 3 30 30 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 35 35 H 1.08002 * 119.86010 * 359.97020 * 7 6 5 36 36 H 1.07999 * 119.88718 * 180.02562 * 8 7 6 37 37 H 1.08999 * 109.46823 * 89.99748 * 14 13 10 38 38 H 1.08996 * 109.47614 * 210.00128 * 14 13 10 39 39 H 1.09001 * 109.47261 * 330.00286 * 14 13 10 40 40 H 1.09000 * 109.47079 * 215.00088 * 15 13 10 41 41 H 1.09001 * 109.47064 * 334.99787 * 15 13 10 42 42 H 0.96994 * 119.99810 * 180.02562 * 19 18 16 43 43 H 1.07992 * 119.92388 * 179.97438 * 24 9 8 44 44 H 1.08999 * 110.41906 * 298.76222 * 26 25 24 45 45 H 1.09008 * 110.41160 * 61.08851 * 26 25 24 46 46 H 1.09008 * 109.46726 * 60.00233 * 29 27 5 47 47 H 1.08999 * 109.47207 * 179.97438 * 29 27 5 48 48 H 1.08992 * 109.47228 * 299.99693 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3549 0.6872 -0.0016 7 6 4.2294 -0.7034 -0.0030 8 6 5.3525 -1.5027 -0.0044 9 6 6.6126 -0.9327 -0.0040 10 16 8.0457 -1.9578 -0.0065 11 8 9.0993 -1.1758 0.5389 12 8 7.6452 -3.2087 0.5358 13 7 8.4437 -2.2400 -1.5890 14 6 9.3578 -1.3330 -2.2874 15 6 7.8816 -3.3968 -2.2906 16 6 6.6509 -2.9740 -3.0506 17 1 6.3202 -1.9465 -3.0143 18 6 5.9465 -3.8992 -3.7915 19 7 6.3489 -5.1505 -3.8353 20 14 4.4213 -3.3749 -4.7341 21 1 4.8084 -2.9434 -6.1013 22 1 3.4778 -4.5182 -4.8244 23 1 3.7653 -2.2465 -4.0260 24 6 6.7448 0.4432 -0.0015 25 6 5.6218 1.2484 -0.0003 26 6 5.4812 2.7540 0.0019 27 6 3.9638 3.0012 -0.0064 28 1 3.6706 3.5458 -0.9038 29 6 3.5508 3.7774 1.2457 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.2483 -1.1548 -0.0029 36 1 5.2481 -2.5776 -0.0059 37 1 10.3831 -1.6797 -2.1577 38 1 9.1117 -1.3154 -3.3490 39 1 9.2590 -0.3289 -1.8749 40 1 8.6204 -3.7934 -2.9870 41 1 7.6150 -4.1666 -1.5664 42 1 5.8535 -5.8012 -4.3568 43 1 7.7280 0.8899 -0.0008 44 1 5.9354 3.1770 0.8979 45 1 5.9375 3.1797 -0.8919 46 1 3.8837 3.2391 2.1332 47 1 4.0092 4.7662 1.2278 48 1 2.4660 3.8799 1.2684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006730066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:39 Heat of formation + Delta-G solvation = -71.839986 kcal Electronic energy + Delta-G solvation = -32342.248172 eV Core-core repulsion = 28103.493620 eV Total energy + Delta-G solvation = -4238.754552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.145 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.57092 -39.03278 -36.78526 -36.68841 -35.54646 -35.25874 -33.98770 -32.53717 -32.27611 -31.14147 -29.96890 -27.84112 -26.74074 -25.54996 -25.12493 -23.17334 -22.30427 -22.21918 -21.42292 -19.86942 -18.47217 -17.60378 -17.27656 -16.87055 -16.72541 -16.34305 -16.13549 -15.48289 -15.15399 -14.81156 -14.77889 -14.41913 -14.24198 -13.77886 -13.55702 -13.40938 -13.37904 -13.18264 -12.96508 -12.72072 -12.53881 -12.35185 -12.32545 -12.21835 -12.01851 -11.92790 -11.73790 -11.58269 -11.47424 -11.40179 -11.21959 -11.16298 -10.96812 -10.83145 -10.67410 -10.52698 -10.46589 -10.20047 -10.08628 -9.82219 -8.86866 -8.55301 -8.20797 -8.02342 -6.16279 -4.22939 0.75680 1.11125 1.34528 2.30926 2.43036 3.19643 3.27932 3.28706 3.41476 3.75338 3.96256 4.19812 4.31581 4.34760 4.41195 4.63754 4.75440 4.80170 4.84572 4.86184 4.95751 5.11267 5.17897 5.19314 5.30195 5.33012 5.42700 5.44380 5.54655 5.58862 5.64590 5.68043 5.69594 5.80829 5.90025 5.94397 5.97560 6.04184 6.14499 6.22230 6.27315 6.32616 6.52267 6.79609 7.16046 7.27196 7.36818 7.56078 7.67595 7.80685 8.09293 8.82458 9.43524 10.91647 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.008795 B = 0.004240 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3182.867808 B = 6602.874894 C = 8620.684958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.156 4.156 3 C 0.528 3.472 4 O -0.518 6.518 5 N -0.552 5.552 6 C 0.189 3.811 7 C -0.184 4.184 8 C 0.037 3.963 9 C -0.685 4.685 10 S 2.695 3.305 11 O -0.979 6.979 12 O -0.957 6.957 13 N -0.986 5.986 14 C 0.104 3.896 15 C 0.242 3.758 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.024 3.976 25 C -0.163 4.163 26 C -0.081 4.081 27 C 0.132 3.868 28 H 0.091 0.909 29 C -0.163 4.163 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.265 0.735 43 H 0.139 0.861 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.073 0.927 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 13.483 7.539 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C 0.320 3.680 4 O -0.393 6.393 5 N -0.274 5.274 6 C 0.093 3.907 7 C -0.206 4.206 8 C 0.017 3.983 9 C -0.771 4.771 10 S 2.783 3.217 11 O -0.969 6.969 12 O -0.947 6.947 13 N -0.826 5.826 14 C -0.042 4.042 15 C 0.120 3.880 16 C -0.581 4.581 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.004 3.996 25 C -0.167 4.167 26 C -0.118 4.118 27 C 0.030 3.970 28 H 0.109 0.891 29 C -0.220 4.220 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.157 0.843 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.111 13.567 8.168 16.360 hybrid contribution -1.490 0.638 -1.189 2.010 sum -5.601 14.204 6.979 16.788 Atomic orbital electron populations 1.21577 0.92465 1.02211 1.03254 1.22118 0.98974 0.93083 1.05322 1.20835 0.79982 0.92532 0.74700 1.90692 1.54013 1.46757 1.47796 1.46272 1.05065 1.06903 1.69198 1.18564 0.88008 0.89965 0.94203 1.21167 1.00823 0.89991 1.08585 1.20744 0.89789 1.00834 0.86920 1.31165 1.18948 1.07987 1.18983 1.01810 0.73337 0.73329 0.73187 1.93506 1.53560 1.72353 1.77519 1.93552 1.83546 1.40599 1.77008 1.57296 1.57422 1.37263 1.30601 1.21278 0.92316 0.91657 0.98996 1.19296 0.93764 0.81837 0.93089 1.21554 1.10478 0.95880 1.30145 0.91968 1.24912 0.97559 0.94749 0.96380 1.69923 1.39909 1.02095 1.40667 0.86649 0.83005 0.78270 0.80449 1.20604 1.20999 1.19825 1.20062 0.97934 0.90921 0.90634 1.19944 0.92387 0.95235 1.09118 1.21217 0.94195 0.92190 1.04227 1.21699 0.92279 0.82757 1.00271 0.89058 1.22170 1.03440 1.00020 0.96417 0.91888 0.91431 0.91956 0.87751 0.87564 0.84009 0.82981 0.93370 0.90640 0.92733 0.94023 0.92752 0.92524 0.84295 0.88743 0.88923 0.92075 0.90797 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.20 37.16 0.34 -1.00 16 2 C -0.16 -1.67 4.25 -27.88 -0.12 -1.79 16 3 C 0.53 6.95 7.59 -10.98 -0.08 6.87 16 4 O -0.52 -7.82 14.88 5.55 0.08 -7.74 16 5 N -0.55 -7.10 2.89 -105.85 -0.31 -7.40 16 6 C 0.19 2.64 6.59 -83.57 -0.55 2.09 16 7 C -0.18 -2.66 8.88 -39.21 -0.35 -3.01 16 8 C 0.04 0.61 9.50 -39.70 -0.38 0.23 16 9 C -0.68 -11.52 5.98 -39.56 -0.24 -11.76 16 10 S 2.69 50.88 5.65 -107.50 -0.61 50.28 16 11 O -0.98 -18.65 16.36 -57.17 -0.94 -19.59 16 12 O -0.96 -20.70 15.84 -57.17 -0.91 -21.61 16 13 N -0.99 -19.33 3.17 -123.06 -0.39 -19.72 16 14 C 0.10 1.67 10.31 59.84 0.62 2.29 16 15 C 0.24 5.71 5.41 -5.19 -0.03 5.68 16 16 C -0.54 -13.53 9.38 -34.44 -0.32 -13.85 16 17 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 18 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -24.41 13.29 55.43 0.74 -23.67 16 20 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 24 C 0.02 0.35 9.52 -39.60 -0.38 -0.02 16 25 C -0.16 -2.18 6.23 -104.27 -0.65 -2.83 16 26 C -0.08 -0.80 6.57 -27.24 -0.18 -0.98 16 27 C 0.13 1.42 3.66 -67.53 -0.25 1.17 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 C -0.16 -1.53 9.05 37.16 0.34 -1.19 16 30 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.10 0.97 6.92 -51.93 -0.36 0.61 16 34 H 0.11 1.14 6.91 -51.93 -0.36 0.78 16 35 H 0.14 1.69 4.21 -52.49 -0.22 1.47 16 36 H 0.15 2.56 7.62 -52.49 -0.40 2.16 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 39 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 40 H 0.04 1.02 8.11 -51.93 -0.42 0.60 16 41 H 0.05 1.39 6.91 -51.93 -0.36 1.03 16 42 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.14 1.76 7.62 -52.49 -0.40 1.36 16 44 H 0.09 0.77 7.71 -51.93 -0.40 0.37 16 45 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 46 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.82 6.76 -51.93 -0.35 0.47 16 LS Contribution 400.31 15.07 6.03 6.03 Total: -1.00 -32.08 400.31 -10.65 -42.73 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.02 Total: 2.09 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.32 Total: -16.44 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.04 Total: -50.80 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -1.76 Total: -48.94 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 50.88 SS G_CDS: -0.61 Total: 50.28 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.08 -10.65 -42.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006730066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.107 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds