Wall clock time and date at job start Tue Mar 31 2020 06:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21264 * 120.00093 * 2 1 4 4 N 1.34780 * 119.99709 * 180.02562 * 2 1 3 5 5 C 1.39452 * 119.99880 * 175.52432 * 4 2 1 6 6 C 1.39128 * 119.92672 * 35.17434 * 5 4 2 7 7 C 1.37660 * 120.07998 * 180.02562 * 6 5 4 8 8 C 1.39776 * 119.92156 * 359.97438 * 7 6 5 9 9 C 1.47545 * 120.07587 * 179.97438 * 8 7 6 10 10 O 1.21626 * 119.99950 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99821 * 179.97438 * 9 8 7 12 12 N 1.40098 * 119.99828 * 179.97438 * 11 9 8 13 13 C 1.29859 * 119.99986 * 180.02562 * 12 11 9 14 14 C 1.47345 * 120.00162 * 180.02562 * 13 12 11 15 15 C 1.39820 * 120.08705 * 180.02562 * 14 13 12 16 16 C 1.37713 * 119.90856 * 179.97438 * 15 14 13 17 17 C 1.39083 * 120.09028 * 359.97235 * 16 15 14 18 18 O 1.35648 * 119.91385 * 180.02562 * 17 16 15 19 19 C 1.34805 * 116.99873 * 354.64379 * 18 17 16 20 20 H 1.08001 * 120.00416 * 5.04017 * 19 18 17 21 21 C 1.38640 * 119.99996 * 185.03387 * 19 18 17 22 22 N 1.31557 * 119.99912 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47282 * 120.00249 * 23 21 19 26 26 H 1.48505 * 109.46739 * 240.00213 * 23 21 19 27 27 C 1.39083 * 120.17511 * 0.03013 * 17 16 15 28 28 C 1.37713 * 120.08929 * 359.97438 * 27 17 16 29 29 C 1.39772 * 119.84568 * 0.27479 * 8 7 6 30 30 C 1.37668 * 119.92537 * 359.46444 * 29 8 7 31 31 H 1.08994 * 109.46975 * 240.00297 * 1 2 3 32 32 H 1.09003 * 109.46711 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.46746 * 119.99798 * 1 2 3 34 34 H 0.97002 * 119.99915 * 355.51706 * 4 2 1 35 35 H 1.08001 * 119.95931 * 0.02562 * 6 5 4 36 36 H 1.07994 * 120.04123 * 179.97438 * 7 6 5 37 37 H 0.97002 * 119.99859 * 0.02562 * 11 9 8 38 38 H 1.08006 * 120.00024 * 0.02562 * 13 12 11 39 39 H 1.07997 * 120.04681 * 0.25412 * 15 14 13 40 40 H 1.08005 * 119.95494 * 179.97438 * 16 15 14 41 41 H 0.97000 * 119.99912 * 179.97438 * 22 21 19 42 42 H 1.07994 * 119.95702 * 179.97438 * 27 17 16 43 43 H 1.07997 * 120.04442 * 179.97438 * 28 27 17 44 44 H 1.08004 * 120.04015 * 179.70003 * 29 8 7 45 45 H 1.07998 * 119.96411 * 180.22948 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5722 -1.1691 -0.0948 6 6 4.3104 -0.1584 0.5128 7 6 5.6840 -0.1568 0.4213 8 6 6.3370 -1.1726 -0.2826 9 6 7.8090 -1.1739 -0.3832 10 8 8.4557 -0.2907 0.1470 11 7 8.4371 -2.1544 -1.0619 12 7 9.8348 -2.1554 -1.1580 13 6 10.4400 -3.0998 -1.8123 14 6 11.9100 -3.1012 -1.9129 15 6 12.5634 -4.1169 -2.6174 16 6 13.9375 -4.1144 -2.7095 17 6 14.6751 -3.1029 -2.1034 18 8 16.0283 -3.1036 -2.1969 19 6 16.6000 -4.1685 -2.7938 20 1 15.9823 -4.9316 -3.2437 21 6 17.9811 -4.2842 -2.8302 22 7 18.7337 -3.3549 -2.2818 23 14 18.7734 -5.7596 -3.6580 24 1 17.7156 -6.6544 -4.1925 25 1 19.6399 -5.2964 -4.7714 26 1 19.5944 -6.5012 -2.6674 27 6 14.0289 -2.0908 -1.4017 28 6 12.6551 -2.0863 -1.3049 29 6 5.5920 -2.1836 -0.8961 30 6 4.2189 -2.1819 -0.7961 31 1 -0.3633 -0.5138 0.8900 32 1 -0.3633 1.0277 -0.0005 33 1 -0.3633 -0.5138 -0.8900 34 1 1.6981 -2.0060 0.0648 35 1 3.8052 0.6260 1.0569 36 1 6.2563 0.6283 0.8928 37 1 7.9214 -2.8590 -1.4845 38 1 9.8658 -3.8844 -2.2828 39 1 11.9912 -4.8999 -3.0925 40 1 14.4430 -4.8988 -3.2532 41 1 19.7000 -3.4360 -2.3069 42 1 14.6051 -1.3074 -0.9321 43 1 12.1541 -1.3003 -0.7594 44 1 6.0931 -2.9673 -1.4449 45 1 3.6429 -2.9648 -1.2668 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006761432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:47 Heat of formation + Delta-G solvation = 4.403368 kcal Electronic energy + Delta-G solvation = -29271.539641 eV Core-core repulsion = 24835.221387 eV Total energy + Delta-G solvation = -4436.318254 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.17178 -39.95780 -39.11029 -38.33087 -37.07358 -35.81570 -35.33424 -32.79995 -32.28387 -31.40962 -31.28490 -30.32089 -29.45809 -28.23608 -25.63090 -24.37882 -23.53344 -22.60710 -21.99536 -21.36935 -20.58370 -20.26424 -18.65467 -18.21022 -17.89714 -17.58823 -17.09027 -16.65467 -16.08457 -15.62049 -15.13011 -15.04602 -14.92025 -14.66393 -14.59572 -14.32988 -14.13799 -13.92308 -13.76282 -13.55304 -13.49146 -13.26443 -12.99243 -12.82629 -12.79541 -12.48581 -12.45704 -11.79014 -11.76933 -11.34534 -11.21487 -10.97934 -10.89171 -10.76819 -10.51111 -10.49477 -10.13669 -9.91822 -9.46461 -9.43101 -9.23524 -8.79787 -8.66795 -8.28283 -7.11202 -6.58146 -4.14519 0.33121 0.91991 1.40466 1.89055 2.21771 2.38603 2.50164 2.61633 2.98605 3.07295 3.12759 3.13615 3.57582 3.86870 4.03623 4.28618 4.36771 4.43184 4.55855 4.56718 4.66430 4.82153 4.87393 4.93748 4.97822 4.99869 5.14092 5.19303 5.20388 5.51967 5.55865 5.58677 5.73320 5.76208 5.88218 5.93250 6.01857 6.15414 6.35114 6.43670 6.63041 6.69021 6.81153 6.96794 7.06059 7.19942 7.21542 7.32911 7.43716 7.64423 7.71256 7.87013 8.46299 8.86690 9.54748 10.58854 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.041651 B = 0.001183 C = 0.001154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.098848 B =23669.036443 C =24251.382027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.519 6.519 4 N -0.676 5.676 5 C 0.166 3.834 6 C -0.129 4.129 7 C -0.036 4.036 8 C -0.142 4.142 9 C 0.575 3.425 10 O -0.504 6.504 11 N -0.583 5.583 12 N -0.265 5.265 13 C 0.150 3.850 14 C -0.174 4.174 15 C -0.034 4.034 16 C -0.242 4.242 17 C 0.170 3.830 18 O -0.166 6.166 19 C -0.393 4.393 20 H 0.097 0.903 21 C 0.041 3.959 22 N -0.854 5.854 23 Si 0.944 3.056 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.201 4.201 28 C -0.025 4.025 29 C -0.068 4.068 30 C -0.152 4.152 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.414 0.586 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.377 0.623 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.132 0.868 41 H 0.272 0.728 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.121 -2.621 2.040 36.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.394 6.394 4 N -0.321 5.321 5 C 0.071 3.929 6 C -0.149 4.149 7 C -0.055 4.055 8 C -0.148 4.148 9 C 0.362 3.638 10 O -0.377 6.377 11 N -0.324 5.324 12 N -0.071 5.071 13 C -0.057 4.057 14 C -0.178 4.178 15 C -0.054 4.054 16 C -0.261 4.261 17 C 0.113 3.887 18 O -0.067 6.067 19 C -0.469 4.469 20 H 0.114 0.886 21 C -0.165 4.165 22 N -0.487 5.487 23 Si 0.768 3.232 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.220 4.220 28 C -0.045 4.045 29 C -0.087 4.087 30 C -0.172 4.172 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.250 0.750 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.215 0.785 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.149 0.851 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -34.917 -0.129 3.070 35.052 hybrid contribution -0.463 -2.483 -1.214 2.803 sum -35.380 -2.612 1.855 35.525 Atomic orbital electron populations 1.21943 0.90282 1.06309 1.04726 1.21109 0.91082 0.83020 0.75007 1.90768 1.70447 1.31240 1.46911 1.43558 1.05123 1.10294 1.73155 1.17953 0.82711 0.96442 0.95807 1.21270 0.93308 0.99778 1.00541 1.21214 0.93610 0.96331 0.94394 1.19872 0.92184 0.98515 1.04203 1.17872 0.86584 0.81054 0.78277 1.90812 1.67005 1.35407 1.44505 1.46803 1.03411 1.27875 1.54351 1.75158 0.89550 1.23131 1.19215 1.24451 0.95073 0.93159 0.93019 1.17783 0.88304 1.01023 1.10708 1.20772 0.93836 0.95627 0.95208 1.21039 0.93687 1.02830 1.08581 1.19599 0.84732 0.92895 0.91469 1.83946 1.14072 1.41618 1.67016 1.21478 0.90408 0.99851 1.35131 0.88566 1.25367 0.95221 0.98863 0.97036 1.70049 1.05710 1.32605 1.40328 0.85603 0.79338 0.79519 0.78728 1.18927 1.20000 1.19993 1.20204 0.93857 1.01345 1.06602 1.20923 0.92454 0.96129 0.94979 1.21083 0.93484 0.96994 0.97135 1.20786 0.94609 1.00425 1.01406 0.88874 0.88337 0.88879 0.74999 0.83611 0.83899 0.78509 0.87616 0.86907 0.85058 0.91751 0.86071 0.85613 0.85269 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.26 10.32 36.01 0.37 0.12 16 2 C 0.51 2.99 7.77 -10.98 -0.09 2.90 16 3 O -0.52 -5.54 14.51 5.57 0.08 -5.46 16 4 N -0.68 -2.97 5.31 -9.85 -0.05 -3.02 16 5 C 0.17 1.21 6.29 -83.73 -0.53 0.68 16 6 C -0.13 -1.23 8.66 -39.46 -0.34 -1.57 16 7 C -0.04 -0.39 9.58 -39.22 -0.38 -0.76 16 8 C -0.14 -1.53 5.88 -104.95 -0.62 -2.15 16 9 C 0.57 8.25 7.88 -12.47 -0.10 8.16 16 10 O -0.50 -9.44 16.68 5.25 0.09 -9.35 16 11 N -0.58 -7.58 6.21 30.47 0.19 -7.39 16 12 N -0.26 -4.27 10.15 32.14 0.33 -3.95 16 13 C 0.15 2.15 10.75 -14.68 -0.16 1.99 16 14 C -0.17 -2.98 5.87 -105.01 -0.62 -3.60 16 15 C -0.03 -0.57 9.78 -39.18 -0.38 -0.95 16 16 C -0.24 -4.91 9.15 -39.46 -0.36 -5.27 16 17 C 0.17 3.96 6.66 -38.95 -0.26 3.70 16 18 O -0.17 -4.57 9.75 0.44 0.00 -4.57 16 19 C -0.39 -10.50 9.48 30.88 0.29 -10.21 16 20 H 0.10 2.34 5.18 -52.49 -0.27 2.07 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.85 -24.26 13.67 55.48 0.76 -23.51 16 23 Si 0.94 19.63 29.55 -169.99 -5.02 14.61 16 24 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 27 C -0.20 -4.25 9.97 -39.46 -0.39 -4.65 16 28 C -0.02 -0.47 9.57 -39.18 -0.37 -0.84 16 29 C -0.07 -0.50 9.53 -39.22 -0.37 -0.87 16 30 C -0.15 -0.91 9.94 -39.46 -0.39 -1.30 16 31 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.10 0.21 8.12 -51.93 -0.42 -0.21 16 33 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 34 H 0.41 0.26 8.82 -40.82 -0.36 -0.10 16 35 H 0.15 1.47 6.22 -52.49 -0.33 1.14 16 36 H 0.14 1.59 7.64 -52.49 -0.40 1.19 16 37 H 0.38 3.31 6.67 -182.60 -1.22 2.09 16 38 H 0.11 1.09 8.02 -52.48 -0.42 0.66 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.13 2.62 5.62 -52.48 -0.29 2.32 16 41 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 43 H 0.13 2.34 7.55 -52.49 -0.40 1.95 16 44 H 0.13 0.62 6.39 -52.48 -0.34 0.28 16 45 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 LS Contribution 398.74 15.07 6.01 6.01 Total: -1.00 -37.12 398.74 -8.10 -45.22 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.70 Total: 5.05 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -4.79 Total: -13.63 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 1.22 Total: -37.87 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.17 Total: -19.38 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.12 -8.10 -45.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006761432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.628 kcal (2) G-P(sol) polarization free energy of solvation -37.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds