Wall clock time and date at job start Tue Mar 31 2020 06:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21264 * 120.00093 * 2 1 4 4 N 1.34780 * 119.99709 * 180.02562 * 2 1 3 5 5 C 1.39452 * 119.99880 * 175.52432 * 4 2 1 6 6 C 1.39128 * 119.92672 * 35.17434 * 5 4 2 7 7 C 1.37660 * 120.07998 * 180.02562 * 6 5 4 8 8 C 1.39776 * 119.92156 * 359.97438 * 7 6 5 9 9 C 1.47545 * 120.07587 * 179.97438 * 8 7 6 10 10 O 1.21626 * 119.99950 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99821 * 179.97438 * 9 8 7 12 12 N 1.40098 * 119.99828 * 179.97438 * 11 9 8 13 13 C 1.29859 * 119.99986 * 180.02562 * 12 11 9 14 14 C 1.47345 * 120.00162 * 180.02562 * 13 12 11 15 15 C 1.39820 * 120.08705 * 180.02562 * 14 13 12 16 16 C 1.37713 * 119.90856 * 179.97438 * 15 14 13 17 17 C 1.39083 * 120.09028 * 359.97235 * 16 15 14 18 18 O 1.35648 * 119.91385 * 180.02562 * 17 16 15 19 19 C 1.34805 * 116.99873 * 354.64379 * 18 17 16 20 20 H 1.08001 * 120.00416 * 5.04017 * 19 18 17 21 21 C 1.38640 * 119.99996 * 185.03387 * 19 18 17 22 22 N 1.31557 * 119.99912 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47282 * 120.00249 * 23 21 19 26 26 H 1.48505 * 109.46739 * 240.00213 * 23 21 19 27 27 C 1.39083 * 120.17511 * 0.03013 * 17 16 15 28 28 C 1.37713 * 120.08929 * 359.97438 * 27 17 16 29 29 C 1.39772 * 119.84568 * 0.27479 * 8 7 6 30 30 C 1.37668 * 119.92537 * 359.46444 * 29 8 7 31 31 H 1.08994 * 109.46975 * 240.00297 * 1 2 3 32 32 H 1.09003 * 109.46711 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.46746 * 119.99798 * 1 2 3 34 34 H 0.97002 * 119.99915 * 355.51706 * 4 2 1 35 35 H 1.08001 * 119.95931 * 0.02562 * 6 5 4 36 36 H 1.07994 * 120.04123 * 179.97438 * 7 6 5 37 37 H 0.97002 * 119.99859 * 0.02562 * 11 9 8 38 38 H 1.08006 * 120.00024 * 0.02562 * 13 12 11 39 39 H 1.07997 * 120.04681 * 0.25412 * 15 14 13 40 40 H 1.08005 * 119.95494 * 179.97438 * 16 15 14 41 41 H 0.97000 * 119.99912 * 179.97438 * 22 21 19 42 42 H 1.07994 * 119.95702 * 179.97438 * 27 17 16 43 43 H 1.07997 * 120.04442 * 179.97438 * 28 27 17 44 44 H 1.08004 * 120.04015 * 179.70003 * 29 8 7 45 45 H 1.07998 * 119.96411 * 180.22948 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5722 -1.1691 -0.0948 6 6 4.3104 -0.1584 0.5128 7 6 5.6840 -0.1568 0.4213 8 6 6.3370 -1.1726 -0.2826 9 6 7.8090 -1.1739 -0.3832 10 8 8.4557 -0.2907 0.1470 11 7 8.4371 -2.1544 -1.0619 12 7 9.8348 -2.1554 -1.1580 13 6 10.4400 -3.0998 -1.8123 14 6 11.9100 -3.1012 -1.9129 15 6 12.5634 -4.1169 -2.6174 16 6 13.9375 -4.1144 -2.7095 17 6 14.6751 -3.1029 -2.1034 18 8 16.0283 -3.1036 -2.1969 19 6 16.6000 -4.1685 -2.7938 20 1 15.9823 -4.9316 -3.2437 21 6 17.9811 -4.2842 -2.8302 22 7 18.7337 -3.3549 -2.2818 23 14 18.7734 -5.7596 -3.6580 24 1 17.7156 -6.6544 -4.1925 25 1 19.6399 -5.2964 -4.7714 26 1 19.5944 -6.5012 -2.6674 27 6 14.0289 -2.0908 -1.4017 28 6 12.6551 -2.0863 -1.3049 29 6 5.5920 -2.1836 -0.8961 30 6 4.2189 -2.1819 -0.7961 31 1 -0.3633 -0.5138 0.8900 32 1 -0.3633 1.0277 -0.0005 33 1 -0.3633 -0.5138 -0.8900 34 1 1.6981 -2.0060 0.0648 35 1 3.8052 0.6260 1.0569 36 1 6.2563 0.6283 0.8928 37 1 7.9214 -2.8590 -1.4845 38 1 9.8658 -3.8844 -2.2828 39 1 11.9912 -4.8999 -3.0925 40 1 14.4430 -4.8988 -3.2532 41 1 19.7000 -3.4360 -2.3069 42 1 14.6051 -1.3074 -0.9321 43 1 12.1541 -1.3003 -0.7594 44 1 6.0931 -2.9673 -1.4449 45 1 3.6429 -2.9648 -1.2668 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006761432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:46 Heat of formation + Delta-G solvation = -22.534092 kcal Electronic energy + Delta-G solvation = -29272.707737 eV Core-core repulsion = 24835.221387 eV Total energy + Delta-G solvation = -4437.486350 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.76670 -40.91414 -40.74840 -39.14586 -38.58380 -37.17850 -35.94510 -34.41503 -33.66467 -32.06352 -31.94829 -31.86733 -30.32075 -29.30571 -27.48192 -25.26030 -24.40075 -23.82245 -23.41005 -22.08295 -21.65059 -21.38771 -19.94930 -19.40363 -18.92591 -18.53423 -18.14496 -17.77843 -16.65467 -16.56722 -16.43395 -16.25414 -16.22179 -15.93222 -15.57777 -15.47746 -15.38612 -15.09517 -14.83956 -14.50978 -14.45743 -14.11743 -14.05399 -13.89579 -13.72711 -13.53931 -13.30115 -13.03964 -12.92284 -12.75261 -12.49661 -12.40679 -12.39164 -12.05599 -11.53831 -11.38665 -11.22275 -11.01903 -10.96238 -10.89803 -10.24750 -10.10243 -9.83764 -9.33571 -8.71150 -8.48085 -6.15490 -0.43224 0.07230 0.29740 0.62610 1.28485 1.38861 1.43819 1.45029 1.56656 1.57823 1.94150 2.06396 2.18521 2.77183 2.89263 3.21057 3.44241 3.47274 3.67815 3.76894 3.81515 3.88477 3.99949 4.17898 4.19989 4.28202 4.31819 4.44681 4.52911 4.54914 4.64872 4.66909 4.80930 4.90987 4.98797 5.01001 5.09804 5.15703 5.16647 5.23981 5.27841 5.33091 5.56418 5.65586 5.66430 5.81886 6.01392 6.09907 6.13090 6.36007 6.53572 6.96183 7.06962 7.41882 7.74536 8.74871 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.041651 B = 0.001183 C = 0.001154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.098848 B =23669.036443 C =24251.382027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.503 3.497 3 O -0.576 6.576 4 N -0.660 5.660 5 C 0.170 3.830 6 C -0.146 4.146 7 C -0.053 4.053 8 C -0.163 4.163 9 C 0.572 3.428 10 O -0.563 6.563 11 N -0.567 5.567 12 N -0.302 5.302 13 C 0.158 3.842 14 C -0.152 4.152 15 C -0.016 4.016 16 C -0.245 4.245 17 C 0.135 3.865 18 O -0.226 6.226 19 C -0.414 4.414 20 H 0.113 0.887 21 C -0.023 4.023 22 N -0.920 5.920 23 Si 1.021 2.979 24 H -0.243 1.243 25 H -0.271 1.271 26 H -0.271 1.271 27 C -0.215 4.215 28 C -0.032 4.032 29 C -0.054 4.054 30 C -0.137 4.137 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.436 0.564 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.403 0.597 38 H 0.165 0.835 39 H 0.171 0.829 40 H 0.135 0.865 41 H 0.273 0.727 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.165 0.835 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -41.787 -7.095 -0.065 42.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.294 3.706 3 O -0.455 6.455 4 N -0.307 5.307 5 C 0.074 3.926 6 C -0.166 4.166 7 C -0.073 4.073 8 C -0.168 4.168 9 C 0.362 3.638 10 O -0.440 6.440 11 N -0.310 5.310 12 N -0.108 5.108 13 C -0.050 4.050 14 C -0.156 4.156 15 C -0.036 4.036 16 C -0.264 4.264 17 C 0.082 3.918 18 O -0.131 6.131 19 C -0.490 4.490 20 H 0.130 0.870 21 C -0.221 4.221 22 N -0.557 5.557 23 Si 0.840 3.160 24 H -0.166 1.166 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.235 4.235 28 C -0.052 4.052 29 C -0.073 4.073 30 C -0.157 4.157 31 H 0.138 0.862 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.277 0.723 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.245 0.755 38 H 0.182 0.818 39 H 0.189 0.811 40 H 0.153 0.847 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.144 0.856 44 H 0.182 0.818 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -40.708 -4.673 0.953 40.986 hybrid contribution 0.675 -0.969 -0.447 1.263 sum -40.032 -5.641 0.506 40.431 Atomic orbital electron populations 1.21976 0.86507 1.06579 1.07203 1.22010 0.92834 0.82358 0.73395 1.90762 1.71823 1.33343 1.49523 1.43530 1.03963 1.11192 1.72001 1.18154 0.84090 0.95716 0.94624 1.21174 0.92861 1.00783 1.01796 1.21094 0.94216 0.96541 0.95409 1.19648 0.90073 1.00413 1.06684 1.18530 0.87920 0.80229 0.77105 1.90783 1.68467 1.37729 1.47063 1.46519 1.02266 1.28272 1.53983 1.75052 0.91849 1.24506 1.19370 1.24513 0.93378 0.94250 0.92817 1.18204 0.90368 0.99265 1.07728 1.21232 0.92406 0.96229 0.93700 1.21245 0.95315 1.01839 1.08006 1.20082 0.84121 0.94646 0.92942 1.83928 1.16121 1.43090 1.69925 1.22018 0.91178 1.00324 1.35437 0.86962 1.26682 0.95583 1.02113 0.97691 1.70206 1.05947 1.35680 1.43867 0.84488 0.78472 0.75533 0.77470 1.16613 1.19613 1.19635 1.20298 0.94979 1.01147 1.07052 1.21042 0.91514 0.97210 0.95437 1.21440 0.94062 0.96084 0.95683 1.21219 0.94217 1.00386 0.99858 0.86234 0.89283 0.86212 0.72339 0.85174 0.86234 0.75500 0.81815 0.81150 0.84745 0.91771 0.87370 0.85629 0.81792 0.80339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.03 10.32 71.24 0.74 0.76 16 2 C 0.50 4.96 7.77 87.66 0.68 5.64 16 3 O -0.58 -12.44 14.51 -2.98 -0.04 -12.48 16 4 N -0.66 -3.62 5.31 -303.48 -1.61 -5.23 16 5 C 0.17 2.03 6.29 38.36 0.24 2.27 16 6 C -0.15 -2.82 8.66 22.35 0.19 -2.62 16 7 C -0.05 -1.19 9.58 22.51 0.22 -0.98 16 8 C -0.16 -3.32 5.88 -20.08 -0.12 -3.44 16 9 C 0.57 16.04 7.88 86.70 0.68 16.73 16 10 O -0.56 -21.98 16.68 -4.11 -0.07 -22.05 16 11 N -0.57 -12.95 6.21 -175.77 -1.09 -14.04 16 12 N -0.30 -8.88 10.15 -52.21 -0.53 -9.41 16 13 C 0.16 3.74 10.75 87.38 0.94 4.68 16 14 C -0.15 -4.72 5.87 -20.12 -0.12 -4.83 16 15 C -0.02 -0.46 9.78 22.53 0.22 -0.24 16 16 C -0.24 -9.66 9.15 22.35 0.20 -9.46 16 17 C 0.13 6.56 6.66 22.68 0.15 6.71 16 18 O -0.23 -13.34 9.75 -21.36 -0.21 -13.55 16 19 C -0.41 -23.16 9.48 67.92 0.64 -22.51 16 20 H 0.11 5.57 5.18 -2.91 -0.02 5.55 16 21 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 22 N -0.92 -55.81 13.67 21.61 0.30 -55.51 16 23 Si 1.02 41.16 29.55 68.60 2.03 43.19 16 24 H -0.24 -8.76 7.11 99.48 0.71 -8.05 16 25 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 26 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 27 C -0.22 -9.62 9.97 22.35 0.22 -9.39 16 28 C -0.03 -1.21 9.57 22.53 0.22 -0.99 16 29 C -0.05 -0.56 9.53 22.51 0.21 -0.34 16 30 C -0.14 -0.96 9.94 22.35 0.22 -0.74 16 31 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.09 0.22 8.12 -2.39 -0.02 0.20 16 33 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.44 -1.57 8.82 -92.71 -0.82 -2.39 16 35 H 0.13 2.88 6.22 -2.91 -0.02 2.87 16 36 H 0.12 3.10 7.64 -2.91 -0.02 3.08 16 37 H 0.40 4.92 6.67 -213.32 -1.42 3.50 16 38 H 0.17 2.01 8.02 -2.91 -0.02 1.98 16 39 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 40 H 0.13 5.19 5.62 -2.91 -0.02 5.17 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 43 H 0.13 4.76 7.55 -2.91 -0.02 4.74 16 44 H 0.16 0.50 6.39 -2.91 -0.02 0.48 16 45 H 0.18 -0.30 8.06 -2.91 -0.02 -0.32 16 Total: -1.00 -94.07 398.74 3.63 -90.44 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -1.15 Total: 18.20 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 6.01 Total: -19.55 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -2.94 Total: -84.20 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -0.32 Total: -48.08 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -94.07 3.63 -90.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006761432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.907 kcal (2) G-P(sol) polarization free energy of solvation -94.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds