Wall clock time and date at job start Tue Mar 31 2020 05:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38138 * 120.03346 * 2 1 4 4 C 1.38260 * 120.06959 * 179.97438 * 3 2 1 5 5 C 1.38300 * 120.13788 * 0.02562 * 4 3 2 6 6 C 1.38097 * 120.06575 * 359.70028 * 5 4 3 7 7 C 1.38832 * 120.03821 * 179.97438 * 2 1 3 8 8 N 1.40088 * 120.06581 * 0.02562 * 7 2 1 9 9 C 1.36758 * 119.74753 * 90.01942 * 8 7 2 10 10 S 1.76195 * 118.48520 * 0.02562 * 9 8 7 11 11 C 1.81003 * 100.00352 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47347 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47003 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00098 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99873 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99981 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00073 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47291 * 90.00050 * 17 15 13 19 19 H 1.48503 * 109.47301 * 210.00004 * 17 15 13 20 20 H 1.48500 * 109.47379 * 329.99976 * 17 15 13 21 21 N 1.31031 * 123.03102 * 179.97438 * 9 8 7 22 22 C 1.35341 * 121.52305 * 0.02889 * 21 9 8 23 23 C 1.39804 * 121.61935 * 180.02562 * 22 21 9 24 24 C 1.36627 * 119.66019 * 179.97438 * 23 22 21 25 25 C 1.38903 * 120.97224 * 0.02562 * 24 23 22 26 26 C 1.36757 * 120.73813 * 359.97048 * 25 24 23 27 27 C 1.39430 * 119.51507 * 359.73256 * 26 25 24 28 28 C 1.35324 * 119.73858 * 269.99811 * 8 7 2 29 29 O 1.21733 * 121.22042 * 0.02562 * 28 8 7 30 30 H 1.08999 * 109.46935 * 270.01779 * 1 2 3 31 31 H 1.08996 * 109.47728 * 30.01763 * 1 2 3 32 32 H 1.09000 * 109.47293 * 150.02215 * 1 2 3 33 33 H 1.07998 * 119.96622 * 359.95899 * 3 2 1 34 34 H 1.07994 * 119.93360 * 179.97438 * 4 3 2 35 35 H 1.07995 * 119.96793 * 179.97438 * 5 4 3 36 36 H 1.08005 * 120.03770 * 180.29928 * 6 5 4 37 37 H 1.09004 * 109.46818 * 299.99831 * 11 10 9 38 38 H 1.09001 * 109.47198 * 59.99716 * 11 10 9 39 39 H 1.09000 * 109.46487 * 299.99878 * 12 11 10 40 40 H 1.09001 * 109.47031 * 59.99824 * 12 11 10 41 41 H 0.96998 * 119.99876 * 179.97438 * 16 15 13 42 42 H 1.07998 * 120.16735 * 359.95353 * 23 22 21 43 43 H 1.08004 * 119.51608 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.63538 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.24284 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.2761 0.0012 0.0005 6 6 3.5906 -1.1977 0.0063 7 6 2.2019 -1.2019 0.0005 8 7 1.5037 -2.4163 0.0005 9 6 1.1663 -3.0051 -1.1868 10 16 1.6302 -2.2018 -2.6848 11 6 0.9587 -3.3729 -3.8906 12 6 1.2490 -2.8702 -5.3062 13 6 0.6904 -3.8455 -6.3100 14 1 0.1798 -4.7352 -5.9721 15 6 0.8321 -3.6026 -7.6597 16 7 0.3451 -4.4541 -8.5358 17 14 1.7171 -2.0649 -8.2442 18 1 3.1654 -2.3553 -8.3972 19 1 1.1570 -1.6381 -9.5516 20 1 1.5326 -0.9788 -7.2484 21 7 0.5147 -4.1394 -1.2619 22 6 0.1289 -4.8087 -0.1506 23 6 -0.5659 -6.0194 -0.2283 24 6 -0.9357 -6.6616 0.9195 25 6 -0.6320 -6.1293 2.1660 26 6 0.0466 -4.9469 2.2747 27 6 0.4417 -4.2731 1.1198 28 6 1.1687 -2.9980 1.1756 29 8 1.4624 -2.4853 2.2398 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6583 2.1312 -0.0007 34 1 4.1192 2.1330 0.0001 35 1 5.3560 0.0051 0.0005 36 1 4.1339 -2.1311 0.0111 37 1 1.4245 -4.3481 -3.7482 38 1 -0.1187 -3.4609 -3.7505 39 1 0.7829 -1.8951 -5.4481 40 1 2.3263 -2.7818 -5.4466 41 1 0.4444 -4.2830 -9.4854 42 1 -0.8094 -6.4446 -1.1908 43 1 -1.4727 -7.5966 0.8567 44 1 -0.9351 -6.6550 3.0595 45 1 0.2788 -4.5405 3.2480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006787463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:56 Heat of formation + Delta-G solvation = 42.643017 kcal Electronic energy + Delta-G solvation = -29788.664850 eV Core-core repulsion = 25862.183573 eV Total energy + Delta-G solvation = -3926.481276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.114 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97641 -39.70416 -38.29149 -37.45029 -34.61289 -33.79591 -32.91875 -31.60029 -31.36125 -30.29841 -29.97128 -27.19979 -25.75477 -25.11242 -24.79272 -22.65605 -22.07488 -21.67808 -21.01543 -19.15642 -18.94648 -18.30729 -17.07252 -16.69071 -16.34552 -16.08664 -15.73129 -15.11172 -14.99582 -14.71958 -14.45441 -14.34398 -14.19847 -13.99798 -13.92871 -13.48823 -13.42333 -13.37951 -12.82082 -12.68120 -12.58905 -12.28096 -12.19047 -12.00425 -11.83458 -11.64717 -11.49145 -11.24848 -10.73072 -10.46421 -10.32381 -10.24665 -10.17925 -10.06984 -9.79881 -9.34676 -9.31329 -9.09964 -8.89005 -8.68249 -8.65345 -7.55124 -6.15595 -4.16418 0.32590 0.71084 0.89510 1.11059 1.13472 2.04230 2.20339 2.60131 2.61947 3.24046 3.32233 3.34214 3.40553 3.84699 4.14410 4.22711 4.34882 4.56185 4.58739 4.63307 4.77464 4.79000 5.01293 5.07816 5.10635 5.17352 5.21160 5.21934 5.41213 5.42425 5.44592 5.63181 5.81254 5.82590 5.89953 5.91009 5.93222 5.97023 6.08034 6.14905 6.22560 6.25399 6.26964 6.39775 6.44754 6.62672 6.70558 6.96366 7.06996 7.56678 7.57241 7.63707 8.37522 8.87334 9.43854 10.96977 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.007917 B = 0.003727 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.990935 B = 7511.021711 C =10442.487892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.051 4.051 3 C -0.114 4.114 4 C -0.097 4.097 5 C -0.117 4.117 6 C -0.084 4.084 7 C 0.099 3.901 8 N -0.486 5.486 9 C 0.379 3.621 10 S -0.024 6.024 11 C -0.071 4.071 12 C 0.000 4.000 13 C -0.519 4.519 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.876 3.124 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.264 1.264 21 N -0.525 5.525 22 C 0.178 3.822 23 C -0.113 4.113 24 C -0.070 4.070 25 C -0.150 4.150 26 C -0.038 4.038 27 C -0.209 4.209 28 C 0.557 3.443 29 O -0.505 6.505 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.027 0.973 40 H 0.022 0.978 41 H 0.266 0.734 42 H 0.142 0.858 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 5.795 21.253 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.053 4.053 3 C -0.133 4.133 4 C -0.115 4.115 5 C -0.136 4.136 6 C -0.103 4.103 7 C 0.010 3.990 8 N -0.208 5.208 9 C 0.007 3.993 10 S 0.215 5.785 11 C -0.219 4.219 12 C -0.040 4.040 13 C -0.558 4.558 14 H 0.096 0.904 15 C -0.130 4.130 16 N -0.534 5.534 17 Si 0.703 3.297 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.189 1.189 21 N -0.251 5.251 22 C 0.063 3.937 23 C -0.134 4.134 24 C -0.089 4.089 25 C -0.169 4.169 26 C -0.058 4.058 27 C -0.217 4.217 28 C 0.350 3.650 29 O -0.379 6.379 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.160 0.840 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.746 6.673 20.850 22.063 hybrid contribution -0.024 -0.275 0.500 0.571 sum 2.721 6.398 21.350 22.454 Atomic orbital electron populations 1.20816 0.90675 1.03506 1.02571 1.19949 0.96524 0.91803 0.96998 1.20937 0.94292 0.96940 1.01131 1.21270 0.94178 0.98329 0.97765 1.21002 1.00207 0.91581 1.00821 1.21162 0.92137 0.99344 0.97691 1.17432 0.90955 0.83584 1.07059 1.43949 1.50244 1.20591 1.06027 1.25480 0.91261 0.91599 0.90921 1.86226 1.69102 1.31660 0.91508 1.23900 1.04286 0.98707 0.94988 1.19464 0.97450 0.97942 0.89131 1.20872 1.37570 1.07833 0.89574 0.90416 1.24945 0.94994 0.96410 0.96604 1.69888 1.45583 1.36123 1.01827 0.86838 0.80310 0.84096 0.78503 1.20026 1.21095 1.18862 1.69329 1.20196 1.06819 1.28769 1.18894 0.93659 0.94092 0.87018 1.20698 0.99280 0.93504 0.99890 1.21040 0.96677 0.99218 0.91965 1.20872 1.01417 0.96561 0.98037 1.20708 0.94032 0.93727 0.97284 1.20477 1.08264 0.97220 0.95702 1.18453 0.79111 0.84848 0.82577 1.90846 1.54126 1.65198 1.27717 0.90820 0.90312 0.91815 0.85067 0.85292 0.85072 0.85577 0.88690 0.88667 0.95510 0.95966 0.92443 0.84030 0.84968 0.85247 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.77 36.00 0.35 -1.04 16 2 C -0.05 -0.65 5.90 -104.44 -0.62 -1.26 16 3 C -0.11 -1.18 9.70 -39.61 -0.38 -1.56 16 4 C -0.10 -0.91 10.04 -39.55 -0.40 -1.31 16 5 C -0.12 -1.19 10.04 -39.61 -0.40 -1.59 16 6 C -0.08 -1.06 9.97 -39.40 -0.39 -1.45 16 7 C 0.10 1.40 3.08 -83.63 -0.26 1.14 16 8 N -0.49 -7.47 1.80 -61.29 -0.11 -7.58 16 9 C 0.38 6.10 7.12 -88.35 -0.63 5.47 16 10 S -0.02 -0.38 20.73 -107.50 -2.23 -2.61 16 11 C -0.07 -1.35 4.72 37.16 0.18 -1.17 16 12 C 0.00 0.00 4.04 -27.88 -0.11 -0.12 16 13 C -0.52 -14.02 9.66 -34.44 -0.33 -14.35 16 14 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 17 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 21 N -0.52 -8.72 8.98 -10.74 -0.10 -8.82 16 22 C 0.18 2.69 6.63 -84.54 -0.56 2.13 16 23 C -0.11 -1.43 10.00 -39.58 -0.40 -1.83 16 24 C -0.07 -0.69 9.95 -39.92 -0.40 -1.09 16 25 C -0.15 -1.47 9.97 -39.87 -0.40 -1.86 16 26 C -0.04 -0.46 9.63 -39.67 -0.38 -0.84 16 27 C -0.21 -3.10 5.90 -104.77 -0.62 -3.71 16 28 C 0.56 8.95 7.62 -12.52 -0.10 8.86 16 29 O -0.51 -8.86 16.68 5.16 0.09 -8.78 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.06 0.85 6.92 -51.93 -0.36 0.49 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.09 1.84 8.10 -51.91 -0.42 1.42 16 38 H 0.09 1.84 8.10 -51.92 -0.42 1.42 16 39 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 40 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.13 1.49 7.82 -52.49 -0.41 1.08 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -31.89 394.19 -12.01 -43.90 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.77 Total: 1.38 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -5.94 Total: -13.65 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.57 Total: -42.22 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.23 Total: -2.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.89 -12.01 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006787463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.541 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds