Wall clock time and date at job start Tue Mar 31 2020 05:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31463 * 1 3 3 Si 1.86801 * 119.99546 * 2 1 4 4 H 1.48499 * 109.47103 * 274.66257 * 3 2 1 5 5 H 1.48496 * 109.47423 * 34.66930 * 3 2 1 6 6 H 1.48507 * 109.46861 * 154.66678 * 3 2 1 7 7 C 1.38803 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99822 * 168.88729 * 7 2 1 9 9 N 1.37066 * 120.00372 * 348.88901 * 7 2 1 10 10 C 1.36257 * 124.87374 * 338.50495 * 9 7 2 11 11 C 1.36279 * 109.69905 * 179.97438 * 10 9 7 12 12 C 1.46939 * 126.69848 * 179.97438 * 11 10 9 13 13 N 1.30072 * 119.99997 * 180.02562 * 12 11 10 14 14 N 1.40092 * 120.00320 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00333 * 180.02562 * 14 13 12 16 16 O 1.21621 * 120.00095 * 0.02562 * 15 14 13 17 17 C 1.47710 * 120.00218 * 180.02562 * 15 14 13 18 18 C 1.39654 * 120.15915 * 0.02562 * 17 15 14 19 19 C 1.37889 * 119.86496 * 180.02562 * 18 17 15 20 20 C 1.38427 * 120.18583 * 0.02562 * 19 18 17 21 21 C 1.38281 * 120.32096 * 359.97437 * 20 19 18 22 22 C 1.38145 * 120.13237 * 359.72206 * 21 20 19 23 23 Cl 1.73600 * 120.09474 * 180.29394 * 22 21 20 24 24 C 1.47568 * 106.59756 * 0.23764 * 11 10 9 25 25 C 1.39199 * 133.90839 * 179.75734 * 24 11 10 26 26 C 1.37901 * 119.68049 * 180.02562 * 25 24 11 27 27 C 1.38675 * 120.29613 * 359.97438 * 26 25 24 28 28 C 1.37935 * 120.59948 * 359.61750 * 27 26 25 29 29 C 1.38328 * 124.88012 * 158.47616 * 9 7 2 30 30 H 0.96995 * 120.00075 * 359.97438 * 1 2 3 31 31 H 1.07995 * 125.14964 * 359.97153 * 10 9 7 32 32 H 1.07995 * 120.00309 * 0.02822 * 12 11 10 33 33 H 0.97000 * 120.00209 * 0.02562 * 14 13 12 34 34 H 1.07999 * 120.06565 * 359.97438 * 18 17 15 35 35 H 1.07998 * 119.91022 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.84199 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.93141 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.15708 * 0.02562 * 25 24 11 39 39 H 1.08001 * 119.85400 * 180.02562 * 26 25 24 40 40 H 1.07994 * 119.69857 * 179.97438 * 27 26 25 41 41 H 1.08005 * 120.02442 * 179.88720 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.3974 2.1034 -1.3954 5 1 1.4988 2.6222 0.7964 6 1 3.5920 1.4138 0.5991 7 6 2.0086 -1.2021 -0.0005 8 1 3.0734 -1.2107 -0.1808 9 7 1.3426 -2.3781 0.2277 10 6 0.1401 -2.4824 0.8598 11 6 -0.2363 -3.7909 0.9180 12 6 -1.4665 -4.3249 1.5185 13 7 -1.6959 -5.6051 1.5015 14 7 -2.8690 -6.1142 2.0736 15 6 -3.1064 -7.4408 2.0565 16 8 -2.3020 -8.1960 1.5449 17 6 -4.3436 -7.9775 2.6591 18 6 -5.2698 -7.1133 3.2470 19 6 -6.4225 -7.6210 3.8082 20 6 -6.6633 -8.9840 3.7908 21 6 -5.7514 -9.8467 3.2108 22 6 -4.5953 -9.3518 2.6391 23 17 -3.4548 -10.4350 1.9044 24 6 0.8358 -4.5674 0.2659 25 6 1.0330 -5.9232 0.0198 26 6 2.1749 -6.3400 -0.6315 27 6 3.1237 -5.4153 -1.0409 28 6 2.9365 -4.0682 -0.8107 29 6 1.7945 -3.6294 -0.1511 30 1 -0.4850 0.8400 0.0004 31 1 -0.4286 -1.6537 1.2549 32 1 -2.1803 -3.6545 1.9738 33 1 -3.5105 -5.5120 2.4819 34 1 -5.0833 -6.0497 3.2627 35 1 -7.1395 -6.9533 4.2627 36 1 -7.5677 -9.3757 4.2324 37 1 -5.9459 -10.9090 3.2003 38 1 0.2952 -6.6451 0.3373 39 1 2.3305 -7.3912 -0.8242 40 1 4.0146 -5.7524 -1.5498 41 1 3.6825 -3.3563 -1.1319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006816706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:43 Heat of formation + Delta-G solvation = 95.336171 kcal Electronic energy + Delta-G solvation = -28217.269263 eV Core-core repulsion = 24089.770221 eV Total energy + Delta-G solvation = -4127.499042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.083 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.22574 -40.14405 -38.30940 -36.49912 -36.18536 -35.87073 -33.49747 -32.56181 -31.42974 -31.01979 -29.96503 -28.72306 -27.88416 -25.43225 -24.20195 -23.04177 -22.10446 -21.62640 -20.71089 -20.30126 -19.21882 -17.97871 -17.72258 -16.63764 -16.57080 -15.80553 -15.53165 -15.09770 -14.97837 -14.87967 -14.72214 -14.34850 -14.30682 -13.84735 -13.66056 -13.39712 -13.14644 -12.91659 -12.34626 -12.23285 -11.97784 -11.83705 -11.79060 -11.65175 -11.54042 -11.38596 -11.17911 -11.11927 -10.75202 -10.70669 -10.45234 -10.05698 -9.52048 -9.46928 -9.44441 -9.27076 -9.06407 -8.97699 -8.10297 -7.23031 -7.01025 -6.54774 -4.47609 0.44132 0.80841 1.92286 2.02178 2.36496 2.68074 2.83237 2.87264 2.94948 2.99383 3.06130 3.61927 3.69099 4.12249 4.32091 4.37185 4.54154 4.63166 4.72173 4.87076 4.89384 5.02433 5.14533 5.32539 5.36937 5.59515 5.72300 5.77282 5.83171 5.93629 5.94001 6.04781 6.29229 6.35729 6.42475 6.56218 6.77506 6.90798 6.97877 7.02973 7.09993 7.39669 7.43076 7.49956 7.61494 7.88355 8.01487 8.03423 8.28127 8.77547 8.89059 9.19157 10.08878 Molecular weight = 367.08amu Principal moments of inertia in cm(-1) A = 0.013955 B = 0.002183 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.955960 B =12825.066505 C =14775.618036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.338 4.338 8 H 0.110 0.890 9 N -0.274 5.274 10 C 0.133 3.867 11 C -0.244 4.244 12 C 0.193 3.807 13 N -0.284 5.284 14 N -0.581 5.581 15 C 0.563 3.437 16 O -0.486 6.486 17 C -0.119 4.119 18 C -0.078 4.078 19 C -0.124 4.124 20 C -0.086 4.086 21 C -0.121 4.121 22 C 0.013 3.987 23 Cl -0.027 7.027 24 C -0.067 4.067 25 C -0.075 4.075 26 C -0.161 4.161 27 C -0.137 4.137 28 C -0.108 4.108 29 C 0.046 3.954 30 H 0.283 0.717 31 H 0.178 0.822 32 H 0.102 0.898 33 H 0.370 0.630 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.528 -9.432 7.789 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.466 4.466 8 H 0.128 0.872 9 N 0.065 4.935 10 C -0.013 4.013 11 C -0.254 4.254 12 C -0.012 4.012 13 N -0.091 5.091 14 N -0.322 5.322 15 C 0.349 3.651 16 O -0.358 6.358 17 C -0.125 4.125 18 C -0.097 4.097 19 C -0.142 4.142 20 C -0.105 4.105 21 C -0.140 4.140 22 C -0.015 4.015 23 Cl 0.002 6.998 24 C -0.073 4.073 25 C -0.094 4.094 26 C -0.181 4.181 27 C -0.157 4.157 28 C -0.128 4.128 29 C -0.061 4.061 30 H 0.093 0.907 31 H 0.195 0.805 32 H 0.119 0.881 33 H 0.208 0.792 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.599 -10.578 7.046 17.207 hybrid contribution -0.529 1.951 0.390 2.058 sum -12.128 -8.627 7.436 16.638 Atomic orbital electron populations 1.69855 1.06291 1.29285 1.42534 1.25530 0.95790 1.00731 0.94554 0.85660 0.79511 0.79249 0.78986 1.19628 1.19931 1.18689 1.19911 0.94307 0.81905 1.50452 0.87222 1.40058 1.14434 1.03929 1.35051 1.22182 0.88302 0.95608 0.95210 1.17892 0.96718 0.92036 1.18798 1.23569 0.94504 0.90422 0.92734 1.75418 1.01333 1.14655 1.17654 1.46803 1.19957 1.07389 1.58057 1.17637 0.85750 0.81095 0.80607 1.90880 1.46182 1.56322 1.42425 1.19837 0.96604 0.92737 1.03288 1.21357 0.93182 0.99505 0.95637 1.21196 0.97381 0.95704 0.99956 1.21324 0.98752 0.93254 0.97163 1.21104 0.92760 1.01100 0.99038 1.21074 0.92623 0.90350 0.97425 1.98437 1.58997 1.62102 1.80237 1.18791 0.94184 0.92435 1.01846 1.20574 0.96938 0.94126 0.97739 1.20690 0.95697 0.98277 1.03431 1.20507 0.99418 0.92264 1.03463 1.19907 0.96037 0.95296 1.01545 1.18472 0.97742 0.85441 1.04454 0.90664 0.80472 0.88053 0.79233 0.84832 0.84719 0.84646 0.84267 0.85770 0.87560 0.87378 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.02 10.86 55.49 0.60 -19.41 16 2 C 0.04 0.99 5.34 -17.50 -0.09 0.90 16 3 Si 0.94 17.64 29.57 -169.99 -5.03 12.62 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.34 -8.20 9.89 -15.00 -0.15 -8.35 16 8 H 0.11 2.54 7.85 -52.49 -0.41 2.13 16 9 N -0.27 -6.76 2.89 -59.48 -0.17 -6.93 16 10 C 0.13 3.08 9.85 -16.29 -0.16 2.92 16 11 C -0.24 -5.43 6.27 -103.28 -0.65 -6.08 16 12 C 0.19 3.64 10.98 -14.78 -0.16 3.48 16 13 N -0.28 -5.57 9.81 32.08 0.31 -5.26 16 14 N -0.58 -9.23 6.21 30.50 0.19 -9.04 16 15 C 0.56 9.33 7.88 -12.39 -0.10 9.24 16 16 O -0.49 -9.85 14.31 5.26 0.08 -9.77 16 17 C -0.12 -1.50 5.88 -104.94 -0.62 -2.12 16 18 C -0.08 -0.70 9.54 -39.18 -0.37 -1.07 16 19 C -0.12 -0.86 10.03 -39.64 -0.40 -1.25 16 20 C -0.09 -0.58 10.04 -39.50 -0.40 -0.97 16 21 C -0.12 -1.04 9.82 -39.60 -0.39 -1.43 16 22 C 0.01 0.16 6.35 -39.06 -0.25 -0.09 16 23 Cl -0.03 -0.38 26.02 -51.86 -1.35 -1.73 16 24 C -0.07 -1.59 6.25 -104.90 -0.66 -2.24 16 25 C -0.08 -1.67 9.81 -39.35 -0.39 -2.06 16 26 C -0.16 -3.24 10.03 -39.54 -0.40 -3.63 16 27 C -0.14 -2.66 10.02 -39.53 -0.40 -3.05 16 28 C -0.11 -2.32 9.93 -39.41 -0.39 -2.71 16 29 C 0.05 1.11 6.73 -83.82 -0.56 0.54 16 30 H 0.28 6.14 8.31 -40.82 -0.34 5.80 16 31 H 0.18 4.00 6.35 -52.49 -0.33 3.67 16 32 H 0.10 1.53 8.03 -52.49 -0.42 1.11 16 33 H 0.37 4.37 6.69 -182.60 -1.22 3.15 16 34 H 0.13 0.92 6.41 -52.49 -0.34 0.58 16 35 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.12 2.84 7.23 -52.49 -0.38 2.46 16 39 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -30.58 374.86 -11.01 -41.60 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -4.78 Total: 10.28 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -6.52 Total: -17.99 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.93 Total: -40.64 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.35 Total: -1.73 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.58 -11.01 -41.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006816706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.934 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds