Wall clock time and date at job start Tue Mar 31 2020 05:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31456 * 1 3 3 Si 1.86796 * 120.00043 * 2 1 4 4 H 1.48506 * 109.47194 * 270.00285 * 3 2 1 5 5 H 1.48499 * 109.47353 * 30.00628 * 3 2 1 6 6 H 1.48503 * 109.47052 * 150.00376 * 3 2 1 7 7 C 1.38808 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00142 * 168.88599 * 7 2 1 9 9 N 1.37066 * 120.00359 * 348.87985 * 7 2 1 10 10 C 1.36250 * 124.87535 * 338.51465 * 9 7 2 11 11 C 1.36282 * 109.70317 * 179.97438 * 10 9 7 12 12 C 1.46934 * 126.70245 * 179.73925 * 11 10 9 13 13 N 1.30076 * 120.00282 * 180.02562 * 12 11 10 14 14 N 1.40091 * 120.00155 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00210 * 180.02562 * 14 13 12 16 16 O 1.21618 * 119.99743 * 359.97438 * 15 14 13 17 17 C 1.47725 * 120.00427 * 179.97438 * 15 14 13 18 18 C 1.39642 * 120.13017 * 359.72372 * 17 15 14 19 19 C 1.37891 * 119.86172 * 179.76677 * 18 17 15 20 20 C 1.38522 * 120.13436 * 0.48494 * 19 18 17 21 21 Cl 1.73593 * 119.86679 * 179.74609 * 20 19 18 22 22 C 1.38521 * 120.26541 * 359.76481 * 20 19 18 23 23 C 1.37881 * 120.13680 * 0.02562 * 22 20 19 24 24 C 1.47573 * 106.59544 * 359.97438 * 11 10 9 25 25 C 1.39190 * 133.90650 * 180.02562 * 24 11 10 26 26 C 1.37906 * 119.68040 * 180.02562 * 25 24 11 27 27 C 1.38674 * 120.29089 * 359.97438 * 26 25 24 28 28 C 1.37925 * 120.60776 * 0.02562 * 27 26 25 29 29 C 1.38330 * 124.87634 * 158.47243 * 9 7 2 30 30 H 0.97000 * 120.00347 * 359.97438 * 1 2 3 31 31 H 1.08005 * 125.14872 * 359.97438 * 10 9 7 32 32 H 1.08007 * 119.99908 * 0.02562 * 12 11 10 33 33 H 0.97004 * 120.00431 * 0.02562 * 14 13 12 34 34 H 1.08001 * 120.07418 * 359.97438 * 18 17 15 35 35 H 1.07998 * 119.93211 * 180.20931 * 19 18 17 36 36 H 1.08001 * 119.92821 * 179.97438 * 22 20 19 37 37 H 1.08005 * 120.06458 * 179.97438 * 23 22 20 38 38 H 1.08002 * 120.16172 * 0.02562 * 25 24 11 39 39 H 1.08003 * 119.85818 * 180.02562 * 26 25 24 40 40 H 1.07998 * 119.69951 * 180.02562 * 27 26 25 41 41 H 1.08003 * 120.03681 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4001 5 1 1.4461 2.6526 0.7002 6 1 3.5462 1.4401 0.7000 7 6 2.0085 -1.2022 -0.0005 8 1 3.0733 -1.2109 -0.1808 9 7 1.3425 -2.3781 0.2279 10 6 0.1400 -2.4824 0.8600 11 6 -0.2365 -3.7908 0.9184 12 6 -1.4644 -4.3252 1.5232 13 7 -1.6941 -5.6054 1.5059 14 7 -2.8651 -6.1147 2.0820 15 6 -3.1029 -7.4413 2.0646 16 8 -2.3011 -8.1960 1.5483 17 6 -4.3374 -7.9785 2.6726 18 6 -5.2571 -7.1150 3.2713 19 6 -6.4099 -7.6219 3.8329 20 6 -6.6517 -8.9857 3.8130 21 17 -8.1022 -9.6171 4.5279 22 6 -5.7406 -9.8478 3.2252 23 6 -4.5864 -9.3524 2.6565 24 6 0.8326 -4.5668 0.2607 25 6 1.0261 -5.9219 0.0081 26 6 2.1658 -6.3384 -0.6472 27 6 3.1159 -5.4140 -1.0543 28 6 2.9364 -4.0685 -0.8103 29 6 1.7942 -3.6295 -0.1510 30 1 -0.4850 0.8400 0.0004 31 1 -0.4287 -1.6535 1.2550 32 1 -2.1762 -3.6549 1.9821 33 1 -3.5048 -5.5127 2.4935 34 1 -5.0676 -6.0519 3.2915 35 1 -7.1236 -6.9548 4.2933 36 1 -5.9344 -10.9102 3.2130 37 1 -3.8766 -10.0257 2.1988 38 1 0.2873 -6.6436 0.3239 39 1 2.3186 -7.3891 -0.8450 40 1 4.0047 -5.7508 -1.5672 41 1 3.6822 -3.3565 -1.1318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007098466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:46 Heat of formation + Delta-G solvation = 84.242515 kcal Electronic energy + Delta-G solvation = -27811.252548 eV Core-core repulsion = 23683.272449 eV Total energy + Delta-G solvation = -4127.980099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.083 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.28224 -40.19402 -38.48666 -36.81375 -36.21687 -35.98094 -33.53919 -32.55840 -31.46079 -31.26943 -29.94941 -28.75208 -27.91456 -25.45896 -24.16003 -23.21531 -22.16758 -21.65681 -20.72890 -20.33899 -19.25396 -18.03902 -17.75468 -16.81789 -16.69656 -15.84378 -15.56403 -15.13621 -14.97731 -14.92244 -14.76130 -14.35156 -14.16573 -13.94830 -13.79217 -13.63713 -13.17986 -12.95210 -12.55265 -12.37267 -12.10388 -11.97550 -11.96619 -11.68125 -11.56211 -11.40479 -11.25545 -11.15920 -10.78022 -10.73637 -10.48096 -10.09904 -9.94235 -9.56385 -9.53441 -9.33732 -9.17152 -9.02516 -8.15278 -7.26076 -7.03435 -6.58394 -4.50150 0.31903 0.84673 1.65244 1.87263 2.31844 2.62406 2.77660 2.81331 2.93548 2.97437 3.02813 3.58457 3.67139 4.09102 4.27770 4.39049 4.46503 4.60775 4.69410 4.79276 4.91100 4.99334 5.11679 5.29935 5.47790 5.53589 5.66723 5.73873 5.80303 5.88357 5.90691 6.01931 6.24833 6.32569 6.38788 6.52862 6.74540 6.87421 6.94805 7.00113 7.06703 7.36267 7.36852 7.46778 7.57874 7.84347 7.94382 7.99458 8.25584 8.74657 8.82247 9.16179 10.06516 Molecular weight = 367.08amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.001824 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.241843 B =15344.276518 C =17224.867192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.338 4.338 8 H 0.110 0.890 9 N -0.273 5.273 10 C 0.133 3.867 11 C -0.245 4.245 12 C 0.196 3.804 13 N -0.288 5.288 14 N -0.580 5.580 15 C 0.570 3.430 16 O -0.507 6.507 17 C -0.118 4.118 18 C -0.077 4.077 19 C -0.117 4.117 20 C -0.016 4.016 21 Cl -0.066 7.066 22 C -0.117 4.117 23 C -0.047 4.047 24 C -0.067 4.067 25 C -0.076 4.076 26 C -0.161 4.161 27 C -0.137 4.137 28 C -0.107 4.107 29 C 0.046 3.954 30 H 0.283 0.717 31 H 0.179 0.821 32 H 0.103 0.897 33 H 0.372 0.628 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.807 -9.170 7.488 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.466 4.466 8 H 0.128 0.872 9 N 0.066 4.934 10 C -0.013 4.013 11 C -0.256 4.256 12 C -0.009 4.009 13 N -0.095 5.095 14 N -0.320 5.320 15 C 0.356 3.644 16 O -0.381 6.381 17 C -0.123 4.123 18 C -0.096 4.096 19 C -0.135 4.135 20 C -0.043 4.043 21 Cl -0.037 7.037 22 C -0.135 4.135 23 C -0.066 4.066 24 C -0.072 4.072 25 C -0.095 4.095 26 C -0.180 4.180 27 C -0.157 4.157 28 C -0.127 4.127 29 C -0.061 4.061 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.120 0.880 33 H 0.210 0.790 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.142 0.858 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.132 -10.253 6.882 16.626 hybrid contribution -0.737 1.978 0.511 2.171 sum -11.869 -8.275 7.394 16.249 Atomic orbital electron populations 1.69846 1.06303 1.29362 1.42405 1.25533 0.95797 1.00755 0.94520 0.85669 0.79435 0.79132 0.79146 1.19548 1.19948 1.18698 1.19909 0.94326 0.81898 1.50491 0.87197 1.40060 1.14383 1.03933 1.34987 1.22190 0.88331 0.95608 0.95134 1.17889 0.96892 0.92069 1.18761 1.23588 0.94425 0.90407 0.92465 1.75444 1.01415 1.14710 1.17933 1.46815 1.20185 1.07491 1.57485 1.17729 0.85605 0.80945 0.80099 1.90797 1.46760 1.56988 1.43534 1.20108 0.95551 0.94727 1.01882 1.21331 0.92776 0.99883 0.95580 1.20996 0.98186 0.93401 1.00934 1.21201 0.89718 0.93964 0.99394 1.98388 1.36142 1.87134 1.82064 1.21073 0.93407 1.00362 0.98706 1.21279 0.95923 0.94180 0.95182 1.18794 0.94174 0.92466 1.01800 1.20567 0.96985 0.94115 0.97822 1.20694 0.95692 0.98295 1.03338 1.20508 0.99456 0.92294 1.03401 1.19910 0.96070 0.95333 1.01400 1.18474 0.97662 0.85449 1.04522 0.90613 0.80441 0.87971 0.79043 0.84631 0.84194 0.84078 0.83341 0.85805 0.87523 0.87344 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.81 10.86 55.49 0.60 -19.21 16 2 C 0.04 0.98 5.34 -17.50 -0.09 0.89 16 3 Si 0.94 17.47 29.57 -169.99 -5.03 12.44 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.34 -8.12 9.89 -15.00 -0.15 -8.27 16 8 H 0.11 2.51 7.85 -52.49 -0.41 2.10 16 9 N -0.27 -6.65 2.89 -59.47 -0.17 -6.82 16 10 C 0.13 3.05 9.85 -16.29 -0.16 2.89 16 11 C -0.25 -5.38 6.27 -103.27 -0.65 -6.03 16 12 C 0.20 3.61 10.98 -14.78 -0.16 3.45 16 13 N -0.29 -5.52 9.81 32.08 0.31 -5.20 16 14 N -0.58 -8.83 6.21 30.51 0.19 -8.64 16 15 C 0.57 8.91 7.89 -12.38 -0.10 8.82 16 16 O -0.51 -10.00 16.68 5.26 0.09 -9.91 16 17 C -0.12 -1.35 5.87 -104.97 -0.62 -1.97 16 18 C -0.08 -0.67 9.54 -39.18 -0.37 -1.04 16 19 C -0.12 -0.91 9.81 -39.60 -0.39 -1.30 16 20 C -0.02 -0.13 6.33 -39.37 -0.25 -0.38 16 21 Cl -0.07 -0.51 28.95 -51.86 -1.50 -2.01 16 22 C -0.12 -0.98 9.81 -39.61 -0.39 -1.37 16 23 C -0.05 -0.48 9.59 -39.19 -0.38 -0.85 16 24 C -0.07 -1.56 6.25 -104.90 -0.66 -2.21 16 25 C -0.08 -1.66 9.81 -39.35 -0.39 -2.05 16 26 C -0.16 -3.15 10.03 -39.54 -0.40 -3.55 16 27 C -0.14 -2.60 10.02 -39.54 -0.40 -3.00 16 28 C -0.11 -2.26 9.93 -39.42 -0.39 -2.66 16 29 C 0.05 1.09 6.74 -83.82 -0.56 0.52 16 30 H 0.28 6.10 8.31 -40.82 -0.34 5.76 16 31 H 0.18 3.95 6.35 -52.48 -0.33 3.62 16 32 H 0.10 1.50 8.03 -52.48 -0.42 1.08 16 33 H 0.37 4.15 6.69 -182.60 -1.22 2.93 16 34 H 0.14 0.88 6.40 -52.49 -0.34 0.54 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.15 1.52 7.65 -52.48 -0.40 1.12 16 38 H 0.12 2.76 7.23 -52.49 -0.38 2.38 16 39 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.11 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -29.60 379.05 -11.04 -40.63 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -4.75 Total: 11.10 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -6.49 Total: -18.09 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.93 Total: -39.87 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.60 -11.04 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007098466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.876 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds