Wall clock time and date at job start Tue Mar 31 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35951 * 116.99850 * 2 1 4 4 C 1.38081 * 120.00574 * 0.25142 * 3 2 1 5 5 C 1.39974 * 119.84034 * 180.27354 * 4 3 2 6 6 C 1.46959 * 120.07685 * 179.74300 * 5 4 3 7 7 C 1.35033 * 119.99962 * 179.73123 * 6 5 4 8 8 C 1.46253 * 120.00158 * 180.02562 * 7 6 5 9 9 O 1.21723 * 119.99674 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00134 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00030 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47290 * 179.97438 * 11 10 8 13 13 C 1.38232 * 119.99773 * 89.99688 * 12 11 10 14 14 C 1.38238 * 119.99610 * 180.27808 * 13 12 11 15 15 C 1.38232 * 120.00101 * 359.49739 * 14 13 12 16 16 C 1.50703 * 120.00058 * 180.23421 * 15 14 13 17 17 C 1.38227 * 119.99740 * 0.50258 * 15 14 13 18 18 C 1.38227 * 119.99945 * 270.02600 * 12 11 10 19 19 C 1.40024 * 119.84113 * 359.47482 * 5 4 3 20 20 C 1.37650 * 120.00566 * 0.26993 * 19 5 4 21 21 C 1.39064 * 120.15504 * 359.97438 * 20 19 5 22 22 O 1.35617 * 119.91532 * 180.02562 * 21 20 19 23 23 C 1.34753 * 117.00443 * 354.38374 * 22 21 20 24 24 H 1.08003 * 119.99816 * 5.06067 * 23 22 21 25 25 C 1.38705 * 120.00208 * 185.06673 * 23 22 21 26 26 N 1.31522 * 120.00096 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 119.99834 * 359.97438 * 25 23 22 28 28 H 1.48502 * 109.46931 * 90.00406 * 27 25 23 29 29 H 1.48503 * 109.47255 * 209.99998 * 27 25 23 30 30 H 1.48498 * 109.47494 * 330.00309 * 27 25 23 31 31 H 1.09001 * 109.47074 * 300.00423 * 1 2 3 32 32 H 1.09002 * 109.46761 * 60.00504 * 1 2 3 33 33 H 1.09003 * 109.47184 * 180.02562 * 1 2 3 34 34 H 1.07996 * 120.07541 * 0.02562 * 4 3 2 35 35 H 1.07992 * 120.00377 * 359.72785 * 6 5 4 36 36 H 1.08000 * 119.99311 * 359.97438 * 7 6 5 37 37 H 0.96996 * 119.99820 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.47373 * 60.00090 * 11 10 8 39 39 H 1.09006 * 109.47274 * 300.00215 * 11 10 8 40 40 H 1.08006 * 120.00021 * 0.02562 * 13 12 11 41 41 H 1.08005 * 119.99796 * 179.72719 * 14 13 12 42 42 H 1.09000 * 109.46928 * 270.26871 * 16 15 14 43 43 H 1.09000 * 109.46984 * 30.26929 * 16 15 14 44 44 H 1.09001 * 109.46955 * 150.27140 * 16 15 14 45 45 H 1.08005 * 120.00220 * 179.72735 * 17 15 14 46 46 H 1.08005 * 119.99881 * 359.97438 * 18 12 11 47 47 H 1.08005 * 120.00316 * 180.25145 * 19 5 4 48 48 H 1.07998 * 119.92449 * 180.02562 * 20 19 5 49 49 H 0.97001 * 119.99527 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0052 5 6 1.9332 3.6148 -0.0006 6 6 1.1380 4.8506 -0.0007 7 6 1.7561 6.0512 -0.0009 8 6 0.9647 7.2811 -0.0005 9 8 -0.2511 7.2225 -0.0005 10 7 1.5816 8.4794 -0.0001 11 6 0.7889 9.7114 -0.0002 12 6 1.7119 10.9027 0.0009 13 6 2.1362 11.4494 -1.1957 14 6 2.9874 12.5386 -1.1946 15 6 3.4061 13.0875 0.0030 16 6 4.3298 14.2782 0.0042 17 6 2.9818 12.5407 1.1996 18 6 2.1347 11.4483 1.1985 19 6 3.3320 3.6802 -0.0005 20 6 4.0753 2.5217 -0.0004 21 6 3.4405 1.2844 0.0002 22 8 4.1776 0.1461 0.0008 23 6 5.5131 0.2818 -0.1167 24 1 5.9573 1.2663 -0.1236 25 6 6.3174 -0.8426 -0.2289 26 7 7.6208 -0.7101 -0.3441 27 14 5.5492 -2.5453 -0.2165 28 1 5.2178 -2.9490 -1.6066 29 1 6.5093 -3.5173 0.3656 30 1 4.3099 -2.5234 0.6014 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 0.2157 2.3144 0.0098 35 1 0.0593 4.7987 -0.0008 36 1 2.8348 6.1031 -0.0004 37 1 2.5505 8.5261 -0.0004 38 1 0.1599 9.7388 0.8895 39 1 0.1605 9.7390 -0.8905 40 1 1.8058 11.0231 -2.1314 41 1 3.3224 12.9631 -2.1295 42 1 5.3645 13.9353 0.0045 43 1 4.1470 14.8807 -0.8856 44 1 4.1461 14.8797 0.8944 45 1 3.3123 12.9668 2.1354 46 1 1.8032 11.0210 2.1335 47 1 3.8277 4.6398 -0.0009 48 1 5.1540 2.5737 0.0000 49 1 8.1832 -1.4965 -0.4222 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007670863.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:28 Heat of formation + Delta-G solvation = -37.047996 kcal Electronic energy + Delta-G solvation = -30230.697478 eV Core-core repulsion = 25896.122101 eV Total energy + Delta-G solvation = -4334.575377 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.13822 -39.87460 -39.22378 -37.86715 -36.73524 -35.36359 -33.12407 -32.84098 -32.39822 -31.31848 -29.88077 -29.28339 -28.39621 -26.72765 -25.65143 -24.89230 -23.11333 -23.11004 -21.86358 -21.18349 -20.88936 -19.40794 -18.15276 -17.93383 -17.35492 -16.54002 -16.21531 -16.05099 -15.70755 -15.52481 -15.37005 -15.21983 -14.80955 -14.64246 -14.23867 -14.17693 -13.97003 -13.81455 -13.80635 -13.68827 -13.25707 -13.04170 -13.00084 -12.51987 -12.43400 -12.34893 -12.32153 -11.95479 -11.93078 -11.60583 -11.45946 -11.35262 -11.10584 -10.99524 -10.89510 -10.74832 -10.30762 -9.95339 -9.60794 -9.48974 -9.31530 -9.16820 -8.95759 -8.88704 -8.09379 -7.06287 -6.58954 -4.18761 0.83552 0.93041 1.02315 1.99619 2.43933 3.09177 3.16469 3.20983 3.38356 3.50800 3.58102 3.77964 4.14714 4.29324 4.37057 4.41173 4.53655 4.56470 4.63751 4.80658 4.91943 4.94965 5.07334 5.15615 5.17379 5.18415 5.28002 5.35480 5.37381 5.41789 5.42780 5.45823 5.56462 5.64975 5.69515 5.70263 5.71488 5.87660 5.99564 6.06003 6.20196 6.22313 6.27972 6.33448 6.37858 6.50463 6.60470 6.75797 6.90300 7.14665 7.31135 7.48985 7.50465 7.77981 7.97679 8.28031 8.74715 9.36596 10.46758 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.001569 C = 0.001416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.327706 B =17839.203382 C =19775.431073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.156 4.156 6 C 0.031 3.969 7 C -0.270 4.270 8 C 0.555 3.445 9 O -0.558 6.558 10 N -0.729 5.729 11 C 0.163 3.837 12 C -0.113 4.113 13 C -0.096 4.096 14 C -0.123 4.123 15 C -0.081 4.081 16 C -0.117 4.117 17 C -0.123 4.123 18 C -0.096 4.096 19 C -0.063 4.063 20 C -0.210 4.210 21 C 0.155 3.845 22 O -0.189 6.189 23 C -0.388 4.388 24 H 0.111 0.889 25 C 0.067 3.933 26 N -0.866 5.866 27 Si 0.905 3.095 28 H -0.271 1.271 29 H -0.281 1.281 30 H -0.254 1.254 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.402 0.598 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.144 0.856 49 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.694 23.259 0.649 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.157 4.157 6 C 0.011 3.989 7 C -0.291 4.291 8 C 0.347 3.653 9 O -0.439 6.439 10 N -0.380 5.380 11 C 0.040 3.960 12 C -0.113 4.113 13 C -0.114 4.114 14 C -0.141 4.141 15 C -0.081 4.081 16 C -0.173 4.173 17 C -0.141 4.141 18 C -0.115 4.115 19 C -0.081 4.081 20 C -0.229 4.229 21 C 0.100 3.900 22 O -0.092 6.092 23 C -0.463 4.463 24 H 0.128 0.872 25 C -0.139 4.139 26 N -0.501 5.501 27 Si 0.730 3.270 28 H -0.196 1.196 29 H -0.206 1.206 30 H -0.178 1.178 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.236 0.764 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.137 0.863 48 H 0.161 0.839 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.282 22.652 0.647 24.885 hybrid contribution 0.259 -0.405 -0.033 0.482 sum -10.024 22.247 0.615 24.408 Atomic orbital electron populations 1.22938 0.79874 1.03146 1.00676 1.86176 1.19882 1.26378 1.89885 1.18035 0.89248 0.84638 1.07409 1.20896 0.98723 0.90845 1.05091 1.18243 0.92838 0.91493 1.13121 1.22235 0.99195 0.90894 0.86583 1.22514 0.99958 0.91630 1.15044 1.18414 0.87646 0.83854 0.75401 1.90780 1.14222 1.87715 1.51178 1.45925 1.10328 1.05023 1.76760 1.20110 0.92141 0.80768 1.02992 1.19894 1.00057 0.97794 0.93594 1.21114 0.96860 0.95808 0.97667 1.21058 0.98499 0.96880 0.97675 1.20007 0.97662 0.97161 0.93251 1.20826 0.98456 0.95213 1.02855 1.21057 0.98529 0.96849 0.97682 1.21111 0.96906 0.95783 0.97652 1.20990 0.92432 0.97598 0.97123 1.20980 1.01249 0.90526 1.10150 1.18626 0.87711 0.87040 0.96618 1.83585 1.20443 1.27530 1.77618 1.20904 0.77169 0.97196 1.51006 0.87183 1.24520 0.94541 0.99746 0.95057 1.69625 1.03165 1.32045 1.45273 0.86164 0.79883 0.81363 0.79613 1.19633 1.20617 1.17767 0.93262 0.93232 0.88935 0.85642 0.85830 0.85643 0.76384 0.90814 0.90807 0.85751 0.85891 0.90943 0.91464 0.91467 0.85895 0.85756 0.86317 0.83870 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.31 -6.03 10.28 -34.20 -0.35 -6.38 16 3 C 0.05 1.04 6.70 -39.12 -0.26 0.77 16 4 C -0.14 -2.31 8.77 -38.99 -0.34 -2.65 16 5 C -0.16 -2.57 5.87 -105.05 -0.62 -3.18 16 6 C 0.03 0.45 9.45 -37.19 -0.35 0.10 16 7 C -0.27 -3.59 9.41 -37.50 -0.35 -3.94 16 8 C 0.56 7.57 7.74 -13.04 -0.10 7.46 16 9 O -0.56 -9.47 16.23 5.17 0.08 -9.38 16 10 N -0.73 -7.54 5.54 -62.94 -0.35 -7.89 16 11 C 0.16 1.53 5.80 -5.19 -0.03 1.50 16 12 C -0.11 -0.92 5.25 -104.63 -0.55 -1.47 16 13 C -0.10 -0.74 9.70 -39.58 -0.38 -1.12 16 14 C -0.12 -0.88 9.70 -39.58 -0.38 -1.26 16 15 C -0.08 -0.56 5.88 -104.63 -0.62 -1.18 16 16 C -0.12 -0.56 10.01 36.01 0.36 -0.20 16 17 C -0.12 -0.87 9.70 -39.59 -0.38 -1.26 16 18 C -0.10 -0.74 9.70 -39.59 -0.38 -1.12 16 19 C -0.06 -1.08 9.40 -39.13 -0.37 -1.45 16 20 C -0.21 -4.26 9.14 -39.49 -0.36 -4.62 16 21 C 0.15 3.51 6.67 -38.76 -0.26 3.25 16 22 O -0.19 -4.91 8.35 -13.94 -0.12 -5.03 16 23 C -0.39 -10.50 9.94 30.90 0.31 -10.19 16 24 H 0.11 2.98 5.42 -52.48 -0.28 2.70 16 25 C 0.07 1.81 5.49 -17.51 -0.10 1.71 16 26 N -0.87 -23.94 13.96 55.48 0.77 -23.17 16 27 Si 0.90 21.23 28.62 -169.99 -4.86 16.37 16 28 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 H -0.25 -6.10 7.11 56.52 0.40 -5.70 16 31 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 32 H 0.05 0.58 7.67 -51.93 -0.40 0.19 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.13 1.76 6.28 -52.49 -0.33 1.43 16 35 H 0.12 1.77 7.52 -52.49 -0.39 1.38 16 36 H 0.13 1.45 6.06 -52.49 -0.32 1.13 16 37 H 0.40 3.42 8.44 -40.82 -0.34 3.07 16 38 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 41 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 44 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 45 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 46 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 47 H 0.12 1.68 6.15 -52.48 -0.32 1.36 16 48 H 0.14 2.98 5.62 -52.49 -0.29 2.69 16 49 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 418.42 15.07 6.31 6.31 Total: -1.00 -31.83 418.42 -9.13 -40.96 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.44 Total: 5.67 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -4.18 Total: -17.46 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.43 Total: -31.06 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.38 Total: -20.79 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.86 Total: 16.37 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -31.83 -9.13 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007670863.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.916 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds