Wall clock time and date at job start Tue Mar 31 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35951 * 116.99850 * 2 1 4 4 C 1.38081 * 120.00574 * 0.25142 * 3 2 1 5 5 C 1.39974 * 119.84034 * 180.27354 * 4 3 2 6 6 C 1.46959 * 120.07685 * 179.74300 * 5 4 3 7 7 C 1.35033 * 119.99962 * 179.73123 * 6 5 4 8 8 C 1.46253 * 120.00158 * 180.02562 * 7 6 5 9 9 O 1.21723 * 119.99674 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00134 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00030 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47290 * 179.97438 * 11 10 8 13 13 C 1.38232 * 119.99773 * 89.99688 * 12 11 10 14 14 C 1.38238 * 119.99610 * 180.27808 * 13 12 11 15 15 C 1.38232 * 120.00101 * 359.49739 * 14 13 12 16 16 C 1.50703 * 120.00058 * 180.23421 * 15 14 13 17 17 C 1.38227 * 119.99740 * 0.50258 * 15 14 13 18 18 C 1.38227 * 119.99945 * 270.02600 * 12 11 10 19 19 C 1.40024 * 119.84113 * 359.47482 * 5 4 3 20 20 C 1.37650 * 120.00566 * 0.26993 * 19 5 4 21 21 C 1.39064 * 120.15504 * 359.97438 * 20 19 5 22 22 O 1.35617 * 119.91532 * 180.02562 * 21 20 19 23 23 C 1.34753 * 117.00443 * 354.38374 * 22 21 20 24 24 H 1.08003 * 119.99816 * 5.06067 * 23 22 21 25 25 C 1.38705 * 120.00208 * 185.06673 * 23 22 21 26 26 N 1.31522 * 120.00096 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 119.99834 * 359.97438 * 25 23 22 28 28 H 1.48502 * 109.46931 * 90.00406 * 27 25 23 29 29 H 1.48503 * 109.47255 * 209.99998 * 27 25 23 30 30 H 1.48498 * 109.47494 * 330.00309 * 27 25 23 31 31 H 1.09001 * 109.47074 * 300.00423 * 1 2 3 32 32 H 1.09002 * 109.46761 * 60.00504 * 1 2 3 33 33 H 1.09003 * 109.47184 * 180.02562 * 1 2 3 34 34 H 1.07996 * 120.07541 * 0.02562 * 4 3 2 35 35 H 1.07992 * 120.00377 * 359.72785 * 6 5 4 36 36 H 1.08000 * 119.99311 * 359.97438 * 7 6 5 37 37 H 0.96996 * 119.99820 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.47373 * 60.00090 * 11 10 8 39 39 H 1.09006 * 109.47274 * 300.00215 * 11 10 8 40 40 H 1.08006 * 120.00021 * 0.02562 * 13 12 11 41 41 H 1.08005 * 119.99796 * 179.72719 * 14 13 12 42 42 H 1.09000 * 109.46928 * 270.26871 * 16 15 14 43 43 H 1.09000 * 109.46984 * 30.26929 * 16 15 14 44 44 H 1.09001 * 109.46955 * 150.27140 * 16 15 14 45 45 H 1.08005 * 120.00220 * 179.72735 * 17 15 14 46 46 H 1.08005 * 119.99881 * 359.97438 * 18 12 11 47 47 H 1.08005 * 120.00316 * 180.25145 * 19 5 4 48 48 H 1.07998 * 119.92449 * 180.02562 * 20 19 5 49 49 H 0.97001 * 119.99527 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0052 5 6 1.9332 3.6148 -0.0006 6 6 1.1380 4.8506 -0.0007 7 6 1.7561 6.0512 -0.0009 8 6 0.9647 7.2811 -0.0005 9 8 -0.2511 7.2225 -0.0005 10 7 1.5816 8.4794 -0.0001 11 6 0.7889 9.7114 -0.0002 12 6 1.7119 10.9027 0.0009 13 6 2.1362 11.4494 -1.1957 14 6 2.9874 12.5386 -1.1946 15 6 3.4061 13.0875 0.0030 16 6 4.3298 14.2782 0.0042 17 6 2.9818 12.5407 1.1996 18 6 2.1347 11.4483 1.1985 19 6 3.3320 3.6802 -0.0005 20 6 4.0753 2.5217 -0.0004 21 6 3.4405 1.2844 0.0002 22 8 4.1776 0.1461 0.0008 23 6 5.5131 0.2818 -0.1167 24 1 5.9573 1.2663 -0.1236 25 6 6.3174 -0.8426 -0.2289 26 7 7.6208 -0.7101 -0.3441 27 14 5.5492 -2.5453 -0.2165 28 1 5.2178 -2.9490 -1.6066 29 1 6.5093 -3.5173 0.3656 30 1 4.3099 -2.5234 0.6014 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 0.2157 2.3144 0.0098 35 1 0.0593 4.7987 -0.0008 36 1 2.8348 6.1031 -0.0004 37 1 2.5505 8.5261 -0.0004 38 1 0.1599 9.7388 0.8895 39 1 0.1605 9.7390 -0.8905 40 1 1.8058 11.0231 -2.1314 41 1 3.3224 12.9631 -2.1295 42 1 5.3645 13.9353 0.0045 43 1 4.1470 14.8807 -0.8856 44 1 4.1461 14.8797 0.8944 45 1 3.3123 12.9668 2.1354 46 1 1.8032 11.0210 2.1335 47 1 3.8277 4.6398 -0.0009 48 1 5.1540 2.5737 0.0000 49 1 8.1832 -1.4965 -0.4222 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007670863.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:27 Heat of formation + Delta-G solvation = -54.903740 kcal Electronic energy + Delta-G solvation = -30231.471761 eV Core-core repulsion = 25896.122101 eV Total energy + Delta-G solvation = -4335.349660 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.42653 -40.91152 -40.09064 -39.43334 -38.17660 -36.22364 -34.67749 -34.11436 -33.51399 -31.85142 -31.34014 -30.48583 -29.25767 -27.90046 -27.29303 -25.81494 -24.33200 -23.64816 -23.33763 -22.19763 -21.75329 -20.56119 -19.91537 -19.51539 -18.44892 -17.84249 -17.14748 -17.09420 -16.74087 -16.70810 -16.40947 -16.28415 -15.93449 -15.74327 -15.57462 -15.44433 -15.42982 -15.00505 -14.76951 -14.51822 -14.32660 -14.24707 -13.86821 -13.80314 -13.59048 -13.38661 -13.29251 -12.97004 -12.91310 -12.84387 -12.74701 -12.55342 -12.14582 -12.11062 -12.05710 -12.01530 -11.86356 -11.43400 -11.07738 -11.06407 -10.62183 -10.12321 -9.85069 -9.52857 -9.51267 -8.61108 -8.52995 -6.20127 -0.35925 0.26213 0.47784 0.49095 1.06280 1.30756 1.35161 1.53046 2.26855 2.27717 2.32053 2.48590 2.78654 2.90093 2.94563 3.09667 3.64788 3.73520 3.88159 3.89279 4.06970 4.08596 4.12533 4.22531 4.25778 4.30611 4.36867 4.44578 4.48771 4.52775 4.54625 4.65012 4.68891 4.73958 4.84042 4.85867 4.87887 4.95187 5.06914 5.12257 5.17343 5.27307 5.33731 5.42866 5.45035 5.47030 5.58149 5.63630 5.69476 5.74134 5.76814 6.00014 6.07625 6.54212 6.55976 6.81302 7.23400 7.56078 8.57464 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.001569 C = 0.001416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.327706 B =17839.203382 C =19775.431073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.050 3.950 4 C -0.133 4.133 5 C -0.121 4.121 6 C 0.011 3.989 7 C -0.236 4.236 8 C 0.551 3.449 9 O -0.591 6.591 10 N -0.711 5.711 11 C 0.166 3.834 12 C -0.121 4.121 13 C -0.103 4.103 14 C -0.132 4.132 15 C -0.086 4.086 16 C -0.117 4.117 17 C -0.132 4.132 18 C -0.103 4.103 19 C -0.071 4.071 20 C -0.208 4.208 21 C 0.108 3.892 22 O -0.229 6.229 23 C -0.399 4.399 24 H 0.092 0.908 25 C 0.017 3.983 26 N -0.913 5.913 27 Si 0.963 3.037 28 H -0.268 1.268 29 H -0.265 1.265 30 H -0.268 1.268 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.162 0.838 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.413 0.587 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.138 0.862 46 H 0.131 0.869 47 H 0.153 0.847 48 H 0.128 0.872 49 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.963 26.252 0.707 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.005 3.995 4 C -0.152 4.152 5 C -0.122 4.122 6 C -0.009 4.009 7 C -0.256 4.256 8 C 0.342 3.658 9 O -0.474 6.474 10 N -0.362 5.362 11 C 0.043 3.957 12 C -0.122 4.122 13 C -0.122 4.122 14 C -0.150 4.150 15 C -0.086 4.086 16 C -0.173 4.173 17 C -0.149 4.149 18 C -0.122 4.122 19 C -0.089 4.089 20 C -0.228 4.228 21 C 0.057 3.943 22 O -0.136 6.136 23 C -0.475 4.475 24 H 0.109 0.891 25 C -0.183 4.183 26 N -0.553 5.553 27 Si 0.786 3.214 28 H -0.193 1.193 29 H -0.189 1.189 30 H -0.192 1.192 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.179 0.821 35 H 0.150 0.850 36 H 0.166 0.834 37 H 0.250 0.750 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.156 0.844 46 H 0.149 0.851 47 H 0.171 0.829 48 H 0.146 0.854 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.580 25.714 0.706 28.635 hybrid contribution 0.548 -0.704 -0.038 0.893 sum -12.032 25.010 0.669 27.762 Atomic orbital electron populations 1.23333 0.76731 1.05276 1.02308 1.86142 1.23223 1.26457 1.89827 1.18245 0.88583 0.86011 1.06661 1.21299 1.00414 0.89794 1.03675 1.18581 0.92722 0.92360 1.08543 1.22158 0.99481 0.90212 0.89009 1.22830 1.01105 0.91164 1.10534 1.18491 0.87182 0.84730 0.75382 1.90782 1.15655 1.88230 1.52714 1.45865 1.11075 1.04584 1.74724 1.20111 0.92261 0.80707 1.02623 1.19777 1.00556 0.97714 0.94107 1.21258 0.97007 0.96118 0.97783 1.21305 0.98343 0.96763 0.98541 1.20330 0.97566 0.97590 0.93154 1.20870 0.98164 0.94590 1.03694 1.21304 0.98364 0.96728 0.98548 1.21256 0.97042 0.96088 0.97767 1.21285 0.92800 0.97809 0.97037 1.21062 1.00933 0.91250 1.09532 1.19254 0.89116 0.87213 0.98673 1.83550 1.19449 1.28884 1.81683 1.20825 0.78363 0.96650 1.51676 0.89089 1.25175 0.94968 1.02724 0.95397 1.69692 1.04025 1.32812 1.48734 0.85326 0.78622 0.78132 0.79368 1.19275 1.18929 1.19217 0.91466 0.91475 0.86871 0.82084 0.85001 0.83379 0.75015 0.91170 0.91178 0.85149 0.84433 0.90458 0.90676 0.90668 0.84420 0.85134 0.82915 0.85438 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.34 -13.17 10.28 -79.03 -0.81 -13.99 16 3 C 0.05 1.99 6.70 22.57 0.15 2.14 16 4 C -0.13 -4.15 8.77 22.65 0.20 -3.95 16 5 C -0.12 -3.60 5.87 -20.14 -0.12 -3.72 16 6 C 0.01 0.28 9.45 23.82 0.23 0.51 16 7 C -0.24 -5.23 9.41 23.62 0.22 -5.01 16 8 C 0.55 13.13 7.74 86.33 0.67 13.80 16 9 O -0.59 -18.40 16.23 -4.42 -0.07 -18.47 16 10 N -0.71 -12.50 5.54 -471.23 -2.61 -15.11 16 11 C 0.17 2.76 5.80 85.64 0.50 3.26 16 12 C -0.12 -1.72 5.25 -19.87 -0.10 -1.83 16 13 C -0.10 -1.37 9.70 22.27 0.22 -1.16 16 14 C -0.13 -1.58 9.70 22.27 0.22 -1.37 16 15 C -0.09 -1.00 5.88 -19.87 -0.12 -1.12 16 16 C -0.12 -0.83 10.01 71.24 0.71 -0.12 16 17 C -0.13 -1.58 9.70 22.27 0.22 -1.36 16 18 C -0.10 -1.37 9.70 22.27 0.22 -1.15 16 19 C -0.07 -2.29 9.40 22.56 0.21 -2.08 16 20 C -0.21 -8.65 9.14 22.33 0.20 -8.45 16 21 C 0.11 5.06 6.67 22.80 0.15 5.21 16 22 O -0.23 -12.59 8.35 -6.52 -0.05 -12.65 16 23 C -0.40 -23.11 9.94 67.93 0.68 -22.43 16 24 H 0.09 5.36 5.42 -2.91 -0.02 5.35 16 25 C 0.02 0.98 5.49 84.85 0.47 1.45 16 26 N -0.91 -53.36 13.96 21.62 0.30 -53.06 16 27 Si 0.96 45.94 28.62 68.60 1.96 47.90 16 28 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 29 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 30 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 31 H 0.07 1.37 7.65 -2.39 -0.02 1.35 16 32 H 0.07 1.38 7.67 -2.39 -0.02 1.36 16 33 H 0.11 2.23 8.14 -2.39 -0.02 2.22 16 34 H 0.16 3.83 6.28 -2.91 -0.02 3.81 16 35 H 0.13 3.22 7.52 -2.91 -0.02 3.20 16 36 H 0.15 2.63 6.06 -2.91 -0.02 2.62 16 37 H 0.41 5.54 8.44 -92.71 -0.78 4.75 16 38 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 39 H 0.07 1.25 8.09 -2.38 -0.02 1.23 16 40 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.07 0.42 8.09 -2.39 -0.02 0.40 16 44 H 0.07 0.42 8.09 -2.39 -0.02 0.40 16 45 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 46 H 0.13 1.49 8.06 -2.91 -0.02 1.46 16 47 H 0.15 3.76 6.15 -2.91 -0.02 3.75 16 48 H 0.13 5.65 5.62 -2.91 -0.02 5.63 16 49 H 0.29 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -73.68 418.42 4.95 -68.73 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.21 Total: 22.48 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 6.02 Total: -25.84 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: -2.31 Total: -68.17 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.94 Total: -45.10 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.96 Total: 47.90 kcal Total: -73.68 4.95 -68.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007670863.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.829 kcal (2) G-P(sol) polarization free energy of solvation -73.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds