Wall clock time and date at job start Tue Mar 31 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35957 * 116.99556 * 2 1 4 4 C 1.38128 * 120.00377 * 359.97240 * 3 2 1 5 5 C 1.39896 * 119.84321 * 180.02562 * 4 3 2 6 6 C 1.47094 * 120.07563 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00328 * 179.97438 * 6 5 4 8 8 C 1.46544 * 120.00200 * 179.97438 * 7 6 5 9 9 N 1.29486 * 124.88848 * 180.02562 * 8 7 6 10 10 C 1.33741 * 118.00324 * 180.02562 * 9 8 7 11 11 C 1.41345 * 128.71475 * 180.02562 * 10 9 8 12 12 C 1.36087 * 120.53637 * 179.97438 * 11 10 9 13 13 C 1.50696 * 119.59879 * 179.97438 * 12 11 10 14 14 C 1.38801 * 120.79908 * 359.97438 * 12 11 10 15 15 C 1.37691 * 120.01805 * 359.97438 * 14 12 11 16 16 C 1.39339 * 120.05419 * 0.04870 * 15 14 12 17 17 S 1.75835 * 124.88812 * 359.69839 * 8 7 6 18 18 C 1.39959 * 119.85059 * 359.96859 * 5 4 3 19 19 C 1.37705 * 120.00517 * 0.03474 * 18 5 4 20 20 C 1.39015 * 120.15453 * 359.97438 * 19 18 5 21 21 O 1.35659 * 119.92538 * 180.02562 * 20 19 18 22 22 C 1.34778 * 116.99635 * 354.37257 * 21 20 19 23 23 H 1.07997 * 120.00285 * 5.07256 * 22 21 20 24 24 C 1.38643 * 119.99661 * 185.06446 * 22 21 20 25 25 N 1.31573 * 119.99805 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00262 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.46616 * 89.99676 * 26 24 22 28 28 H 1.48499 * 109.47246 * 209.99831 * 26 24 22 29 29 H 1.48493 * 109.46767 * 330.00340 * 26 24 22 30 30 H 1.08995 * 109.46691 * 60.00509 * 1 2 3 31 31 H 1.09005 * 109.46480 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47319 * 300.00323 * 1 2 3 33 33 H 1.08000 * 120.07894 * 0.02562 * 4 3 2 34 34 H 1.08007 * 119.99855 * 359.95409 * 6 5 4 35 35 H 1.08007 * 119.99817 * 0.02562 * 7 6 5 36 36 H 1.07992 * 119.73099 * 359.95470 * 11 10 9 37 37 H 1.08998 * 109.47568 * 89.99853 * 13 12 11 38 38 H 1.09001 * 109.47133 * 209.99887 * 13 12 11 39 39 H 1.09001 * 109.46921 * 329.99586 * 13 12 11 40 40 H 1.08002 * 119.99394 * 180.02562 * 14 12 11 41 41 H 1.08008 * 119.97235 * 180.02562 * 15 14 12 42 42 H 1.07998 * 120.00025 * 180.30308 * 18 5 4 43 43 H 1.08002 * 119.92550 * 180.02562 * 19 18 5 44 44 H 0.96999 * 119.99943 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2939 2.3699 -0.0006 5 6 1.9324 3.6146 -0.0011 6 6 1.1363 4.8515 -0.0012 7 6 1.7529 6.0499 -0.0012 8 6 0.9597 7.2821 -0.0018 9 7 1.4520 8.4797 -0.0023 10 6 0.5985 9.5094 -0.0023 11 6 0.8834 10.8939 -0.0033 12 6 -0.1252 11.8074 -0.0036 13 6 0.2027 13.2782 -0.0041 14 6 -1.4524 11.4008 -0.0035 15 6 -1.7617 10.0591 -0.0036 16 6 -0.7433 9.1081 -0.0028 17 16 -0.7974 7.3471 -0.0101 18 6 3.3304 3.6804 -0.0004 19 6 4.0744 2.5216 0.0001 20 6 3.4401 1.2846 0.0004 21 8 4.1775 0.1459 0.0015 22 6 5.5133 0.2820 -0.1157 23 1 5.9573 1.2665 -0.1223 24 6 6.3174 -0.8419 -0.2274 25 7 7.6214 -0.7091 -0.3412 26 14 5.5494 -2.5447 -0.2164 27 1 5.2193 -2.9478 -1.6071 28 1 6.5090 -3.5168 0.3663 29 1 4.3094 -2.5231 0.6002 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2153 2.3148 -0.0006 34 1 0.0575 4.7993 -0.0015 35 1 2.8317 6.1021 -0.0015 36 1 1.9099 11.2294 -0.0035 37 1 0.2818 13.6326 -1.0319 38 1 -0.5870 13.8267 0.5095 39 1 1.1503 13.4394 0.5098 40 1 -2.2426 12.1370 -0.0042 41 1 -2.7947 9.7435 -0.0040 42 1 3.8259 4.6400 0.0041 43 1 5.1531 2.5739 0.0011 44 1 8.1840 -1.4954 -0.4198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007716577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:06 Heat of formation + Delta-G solvation = 33.081102 kcal Electronic energy + Delta-G solvation = -27698.778880 eV Core-core repulsion = 23674.164306 eV Total energy + Delta-G solvation = -4024.614574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.103 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.47544 -39.90917 -37.89298 -37.62548 -36.77670 -33.84315 -32.65560 -32.44444 -30.48785 -29.83694 -28.82632 -27.28451 -26.79620 -25.68287 -24.38044 -22.93416 -22.44104 -21.72933 -20.41392 -19.80684 -18.25905 -18.10332 -17.93329 -16.70881 -16.41755 -15.99167 -15.59640 -15.40334 -15.03762 -14.99878 -14.70073 -14.46760 -14.02311 -13.93221 -13.85004 -13.83094 -13.78329 -13.29126 -12.75555 -12.61525 -12.43963 -12.30938 -12.19636 -12.11518 -11.98751 -11.79334 -11.68995 -11.17806 -11.04134 -11.02390 -10.92468 -10.74969 -10.31885 -10.23273 -9.80197 -9.76047 -9.61568 -9.03200 -8.48369 -8.30988 -8.06203 -7.01224 -6.60459 -4.19420 -0.08938 0.87161 1.07535 1.21087 1.53375 1.97254 2.18392 2.92894 3.16073 3.20402 3.37151 3.49010 3.69211 3.76235 4.13220 4.33204 4.35470 4.47657 4.53998 4.75269 4.79454 4.93341 4.98760 5.01369 5.11508 5.21960 5.24136 5.27690 5.37667 5.39114 5.48978 5.57225 5.61223 5.64993 5.66280 5.81532 5.83443 5.96132 6.03888 6.16543 6.25145 6.33412 6.39101 6.47443 6.71638 6.87108 7.09717 7.28769 7.47404 7.54549 7.76239 7.95033 8.72747 9.33996 10.45026 Molecular weight = 367.10amu Principal moments of inertia in cm(-1) A = 0.020008 B = 0.001691 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.128000 B =16550.885665 C =17925.189028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.053 3.947 4 C -0.139 4.139 5 C -0.147 4.147 6 C -0.005 4.005 7 C -0.156 4.156 8 C 0.185 3.815 9 N -0.482 5.482 10 C 0.102 3.898 11 C -0.075 4.075 12 C -0.074 4.074 13 C -0.113 4.113 14 C -0.111 4.111 15 C -0.066 4.066 16 C -0.188 4.188 17 S 0.042 5.958 18 C -0.063 4.063 19 C -0.207 4.207 20 C 0.154 3.846 21 O -0.188 6.188 22 C -0.386 4.386 23 H 0.112 0.888 24 C 0.066 3.934 25 N -0.864 5.864 26 Si 0.905 3.095 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.254 1.254 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.148 0.852 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.145 0.855 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.712 19.255 0.605 26.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.008 3.992 4 C -0.158 4.158 5 C -0.149 4.149 6 C -0.029 4.029 7 C -0.178 4.178 8 C -0.093 4.093 9 N -0.195 5.195 10 C -0.020 4.020 11 C -0.095 4.095 12 C -0.077 4.077 13 C -0.170 4.170 14 C -0.133 4.133 15 C -0.088 4.088 16 C -0.307 4.307 17 S 0.299 5.701 18 C -0.082 4.082 19 C -0.227 4.227 20 C 0.099 3.901 21 O -0.090 6.090 22 C -0.461 4.461 23 H 0.129 0.871 24 C -0.139 4.139 25 N -0.499 5.499 26 Si 0.730 3.270 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.178 1.178 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.165 0.835 36 H 0.151 0.849 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.162 0.838 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.635 17.999 0.594 25.915 hybrid contribution -0.153 0.307 -0.031 0.345 sum -18.788 18.306 0.563 26.238 Atomic orbital electron populations 1.22934 0.79917 1.03158 1.00608 1.86185 1.19850 1.26374 1.89861 1.18023 0.89241 0.84610 1.07291 1.20830 0.98605 0.90809 1.05592 1.18036 0.92721 0.91013 1.13116 1.22052 0.98212 0.91414 0.91225 1.21031 0.99444 0.86850 1.10498 1.25755 0.91798 0.94685 0.97040 1.66425 1.36474 0.97613 1.18961 1.19067 0.86879 0.94008 1.02025 1.20315 0.99960 0.88589 1.00668 1.19411 0.92868 0.96142 0.99321 1.20814 1.02559 0.90940 1.02679 1.20975 0.96086 0.94957 1.01265 1.20310 0.97457 0.91590 0.99462 1.23753 0.98250 0.96931 1.11737 1.84866 1.09144 0.99864 1.76255 1.21002 0.92374 0.97770 0.97032 1.20986 1.01321 0.90466 1.09907 1.18610 0.87713 0.87033 0.96781 1.83599 1.20464 1.27570 1.77391 1.20919 0.77139 0.97266 1.50766 0.87096 1.24529 0.94551 0.99788 0.95063 1.69647 1.03141 1.32102 1.45000 0.86157 0.79886 0.81328 0.79617 1.19614 1.20588 1.17756 0.93262 0.88944 0.93287 0.85729 0.86879 0.83462 0.84926 0.90846 0.91223 0.91214 0.84968 0.85355 0.86129 0.83795 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.31 -5.84 10.28 -34.22 -0.35 -6.20 16 3 C 0.05 1.04 6.70 -39.12 -0.26 0.78 16 4 C -0.14 -2.23 8.77 -39.00 -0.34 -2.57 16 5 C -0.15 -2.32 5.87 -105.04 -0.62 -2.94 16 6 C -0.01 -0.07 9.45 -37.22 -0.35 -0.42 16 7 C -0.16 -2.10 9.59 -37.46 -0.36 -2.46 16 8 C 0.19 2.58 7.33 -15.19 -0.11 2.47 16 9 N -0.48 -7.25 10.58 -8.85 -0.09 -7.34 16 10 C 0.10 1.38 6.93 -85.17 -0.59 0.79 16 11 C -0.07 -0.81 9.66 -39.17 -0.38 -1.19 16 12 C -0.07 -0.64 5.83 -105.19 -0.61 -1.25 16 13 C -0.11 -0.62 9.98 36.00 0.36 -0.26 16 14 C -0.11 -0.89 9.68 -39.57 -0.38 -1.28 16 15 C -0.07 -0.62 10.07 -39.37 -0.40 -1.02 16 16 C -0.19 -2.30 6.54 -38.49 -0.25 -2.55 16 17 S 0.04 0.49 22.14 -107.50 -2.38 -1.89 16 18 C -0.06 -1.07 9.40 -39.13 -0.37 -1.44 16 19 C -0.21 -4.18 9.14 -39.49 -0.36 -4.54 16 20 C 0.15 3.43 6.67 -38.79 -0.26 3.17 16 21 O -0.19 -4.82 8.35 -14.14 -0.12 -4.94 16 22 C -0.39 -10.38 9.94 30.88 0.31 -10.08 16 23 H 0.11 2.99 5.42 -52.49 -0.28 2.71 16 24 C 0.07 1.79 5.49 -17.51 -0.10 1.69 16 25 N -0.86 -23.82 13.96 55.48 0.77 -23.05 16 26 Si 0.91 21.07 28.62 -169.99 -4.86 16.20 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 29 H -0.25 -6.03 7.11 56.52 0.40 -5.63 16 30 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 33 H 0.12 1.60 6.28 -52.49 -0.33 1.27 16 34 H 0.11 1.28 7.09 -52.48 -0.37 0.91 16 35 H 0.15 1.96 6.06 -52.48 -0.32 1.64 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 39 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 42 H 0.12 1.75 6.15 -52.49 -0.32 1.42 16 43 H 0.14 2.99 5.62 -52.49 -0.29 2.70 16 44 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -30.61 388.95 -10.06 -40.67 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.80 Total: 2.40 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -4.08 Total: -21.72 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.68 Total: -30.39 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.47 Total: -11.13 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.86 Total: 16.20 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -2.38 Total: -1.89 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.61 -10.06 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007716577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.748 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds