Wall clock time and date at job start Tue Mar 31 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35957 * 116.99556 * 2 1 4 4 C 1.38128 * 120.00377 * 359.97240 * 3 2 1 5 5 C 1.39896 * 119.84321 * 180.02562 * 4 3 2 6 6 C 1.47094 * 120.07563 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00328 * 179.97438 * 6 5 4 8 8 C 1.46544 * 120.00200 * 179.97438 * 7 6 5 9 9 N 1.29486 * 124.88848 * 180.02562 * 8 7 6 10 10 C 1.33741 * 118.00324 * 180.02562 * 9 8 7 11 11 C 1.41345 * 128.71475 * 180.02562 * 10 9 8 12 12 C 1.36087 * 120.53637 * 179.97438 * 11 10 9 13 13 C 1.50696 * 119.59879 * 179.97438 * 12 11 10 14 14 C 1.38801 * 120.79908 * 359.97438 * 12 11 10 15 15 C 1.37691 * 120.01805 * 359.97438 * 14 12 11 16 16 C 1.39339 * 120.05419 * 0.04870 * 15 14 12 17 17 S 1.75835 * 124.88812 * 359.69839 * 8 7 6 18 18 C 1.39959 * 119.85059 * 359.96859 * 5 4 3 19 19 C 1.37705 * 120.00517 * 0.03474 * 18 5 4 20 20 C 1.39015 * 120.15453 * 359.97438 * 19 18 5 21 21 O 1.35659 * 119.92538 * 180.02562 * 20 19 18 22 22 C 1.34778 * 116.99635 * 354.37257 * 21 20 19 23 23 H 1.07997 * 120.00285 * 5.07256 * 22 21 20 24 24 C 1.38643 * 119.99661 * 185.06446 * 22 21 20 25 25 N 1.31573 * 119.99805 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00262 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.46616 * 89.99676 * 26 24 22 28 28 H 1.48499 * 109.47246 * 209.99831 * 26 24 22 29 29 H 1.48493 * 109.46767 * 330.00340 * 26 24 22 30 30 H 1.08995 * 109.46691 * 60.00509 * 1 2 3 31 31 H 1.09005 * 109.46480 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47319 * 300.00323 * 1 2 3 33 33 H 1.08000 * 120.07894 * 0.02562 * 4 3 2 34 34 H 1.08007 * 119.99855 * 359.95409 * 6 5 4 35 35 H 1.08007 * 119.99817 * 0.02562 * 7 6 5 36 36 H 1.07992 * 119.73099 * 359.95470 * 11 10 9 37 37 H 1.08998 * 109.47568 * 89.99853 * 13 12 11 38 38 H 1.09001 * 109.47133 * 209.99887 * 13 12 11 39 39 H 1.09001 * 109.46921 * 329.99586 * 13 12 11 40 40 H 1.08002 * 119.99394 * 180.02562 * 14 12 11 41 41 H 1.08008 * 119.97235 * 180.02562 * 15 14 12 42 42 H 1.07998 * 120.00025 * 180.30308 * 18 5 4 43 43 H 1.08002 * 119.92550 * 180.02562 * 19 18 5 44 44 H 0.96999 * 119.99943 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2939 2.3699 -0.0006 5 6 1.9324 3.6146 -0.0011 6 6 1.1363 4.8515 -0.0012 7 6 1.7529 6.0499 -0.0012 8 6 0.9597 7.2821 -0.0018 9 7 1.4520 8.4797 -0.0023 10 6 0.5985 9.5094 -0.0023 11 6 0.8834 10.8939 -0.0033 12 6 -0.1252 11.8074 -0.0036 13 6 0.2027 13.2782 -0.0041 14 6 -1.4524 11.4008 -0.0035 15 6 -1.7617 10.0591 -0.0036 16 6 -0.7433 9.1081 -0.0028 17 16 -0.7974 7.3471 -0.0101 18 6 3.3304 3.6804 -0.0004 19 6 4.0744 2.5216 0.0001 20 6 3.4401 1.2846 0.0004 21 8 4.1775 0.1459 0.0015 22 6 5.5133 0.2820 -0.1157 23 1 5.9573 1.2665 -0.1223 24 6 6.3174 -0.8419 -0.2274 25 7 7.6214 -0.7091 -0.3412 26 14 5.5494 -2.5447 -0.2164 27 1 5.2193 -2.9478 -1.6071 28 1 6.5090 -3.5168 0.3663 29 1 4.3094 -2.5231 0.6002 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2153 2.3148 -0.0006 34 1 0.0575 4.7993 -0.0015 35 1 2.8317 6.1021 -0.0015 36 1 1.9099 11.2294 -0.0035 37 1 0.2818 13.6326 -1.0319 38 1 -0.5870 13.8267 0.5095 39 1 1.1503 13.4394 0.5098 40 1 -2.2426 12.1370 -0.0042 41 1 -2.7947 9.7435 -0.0040 42 1 3.8259 4.6400 0.0041 43 1 5.1531 2.5739 0.0011 44 1 8.1840 -1.4954 -0.4198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007716577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:05 Heat of formation + Delta-G solvation = 16.743113 kcal Electronic energy + Delta-G solvation = -27699.487349 eV Core-core repulsion = 23674.164306 eV Total energy + Delta-G solvation = -4025.323043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.103 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.42018 -41.31360 -39.42543 -38.63703 -38.02179 -35.07851 -34.39494 -33.28360 -31.58445 -31.20472 -30.01115 -28.04010 -27.81872 -27.35933 -25.60053 -23.85915 -23.54839 -23.14419 -21.46122 -20.90514 -19.87359 -19.52984 -19.10711 -17.86723 -17.54729 -17.15718 -16.78897 -16.71699 -16.30820 -15.93249 -15.88760 -15.57203 -15.45455 -15.42262 -15.03282 -14.82928 -14.76571 -14.34089 -14.24091 -13.81512 -13.47960 -13.45957 -13.33528 -13.02339 -12.99829 -12.84042 -12.66550 -12.61696 -12.58699 -12.09840 -12.09452 -12.06148 -11.84053 -11.42567 -11.17100 -11.00931 -10.75686 -10.72880 -9.71429 -9.30384 -9.12641 -8.53067 -8.47911 -6.20559 -1.06898 0.03642 0.13493 0.15590 0.48916 0.58884 1.06559 1.30573 1.34646 1.53076 1.83167 2.27665 2.48906 2.64199 2.75587 2.76848 2.94549 3.08923 3.53969 3.72087 3.84498 3.93640 4.06788 4.15965 4.18869 4.26702 4.28483 4.32877 4.48143 4.48472 4.50467 4.53449 4.67249 4.76861 4.86016 4.86618 4.92244 5.04222 5.07389 5.12057 5.13347 5.22473 5.34583 5.43897 5.50651 5.56818 5.69501 5.75953 5.77759 5.99562 6.55945 6.57409 6.80983 7.55199 8.57638 Molecular weight = 367.10amu Principal moments of inertia in cm(-1) A = 0.020008 B = 0.001691 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.128000 B =16550.885665 C =17925.189028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.341 6.341 3 C 0.054 3.946 4 C -0.130 4.130 5 C -0.111 4.111 6 C -0.014 4.014 7 C -0.130 4.130 8 C 0.150 3.850 9 N -0.501 5.501 10 C 0.062 3.938 11 C -0.091 4.091 12 C -0.070 4.070 13 C -0.113 4.113 14 C -0.096 4.096 15 C -0.075 4.075 16 C -0.203 4.203 17 S 0.080 5.920 18 C -0.079 4.079 19 C -0.208 4.208 20 C 0.107 3.893 21 O -0.228 6.228 22 C -0.399 4.399 23 H 0.089 0.911 24 C 0.015 3.985 25 N -0.915 5.915 26 Si 0.965 3.035 27 H -0.267 1.267 28 H -0.265 1.265 29 H -0.266 1.266 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.170 0.830 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.171 0.829 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.124 0.876 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.228 23.027 0.661 33.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.256 6.256 3 C 0.009 3.991 4 C -0.149 4.149 5 C -0.112 4.112 6 C -0.038 4.038 7 C -0.152 4.152 8 C -0.128 4.128 9 N -0.215 5.215 10 C -0.059 4.059 11 C -0.112 4.112 12 C -0.073 4.073 13 C -0.169 4.169 14 C -0.117 4.117 15 C -0.097 4.097 16 C -0.322 4.322 17 S 0.337 5.663 18 C -0.097 4.097 19 C -0.227 4.227 20 C 0.056 3.944 21 O -0.135 6.135 22 C -0.475 4.475 23 H 0.106 0.894 24 C -0.184 4.184 25 N -0.555 5.555 26 Si 0.788 3.212 27 H -0.192 1.192 28 H -0.190 1.190 29 H -0.190 1.190 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.088 0.912 33 H 0.187 0.813 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.188 0.812 41 H 0.172 0.828 42 H 0.161 0.839 43 H 0.141 0.859 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.208 21.815 0.652 32.593 hybrid contribution 0.978 -0.008 -0.036 0.979 sum -23.229 21.807 0.616 31.867 Atomic orbital electron populations 1.23357 0.76613 1.05302 1.02488 1.86154 1.23351 1.26353 1.89768 1.18230 0.88410 0.86150 1.06357 1.21275 1.00603 0.89350 1.03699 1.18411 0.92288 0.92341 1.08155 1.21999 0.99274 0.89681 0.92811 1.21163 0.99600 0.87262 1.07166 1.25741 0.93547 0.94407 0.99100 1.66382 1.38225 0.98488 1.18381 1.19393 0.87510 0.94617 1.04371 1.20575 1.01015 0.88216 1.01437 1.19845 0.92738 0.97399 0.97268 1.20902 1.03500 0.88794 1.03718 1.21504 0.96767 0.95212 0.98227 1.20738 0.98097 0.91787 0.99085 1.24091 0.98497 0.97625 1.11939 1.84540 1.06452 0.99821 1.75506 1.21239 0.93273 0.97520 0.97649 1.21023 1.00799 0.91386 1.09531 1.19232 0.89304 0.87026 0.98834 1.83563 1.19330 1.28828 1.81782 1.20800 0.78457 0.96577 1.51669 0.89401 1.25211 0.94965 1.02888 0.95364 1.69722 1.04081 1.32841 1.48835 0.85285 0.78631 0.77866 0.79412 1.19197 1.18962 1.19032 0.91230 0.87025 0.91225 0.81315 0.83975 0.83799 0.84797 0.89735 0.89146 0.90993 0.81159 0.82834 0.83878 0.85867 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.34 -12.75 10.28 -79.09 -0.81 -13.56 16 3 C 0.05 2.08 6.70 22.57 0.15 2.23 16 4 C -0.13 -3.83 8.77 22.65 0.20 -3.63 16 5 C -0.11 -3.23 5.87 -20.14 -0.12 -3.35 16 6 C -0.01 -0.33 9.45 23.80 0.22 -0.10 16 7 C -0.13 -3.21 9.59 23.64 0.23 -2.98 16 8 C 0.15 3.90 7.33 87.21 0.64 4.54 16 9 N -0.50 -14.55 10.58 -181.93 -1.93 -16.48 16 10 C 0.06 1.58 6.93 40.06 0.28 1.86 16 11 C -0.09 -1.84 9.66 22.53 0.22 -1.62 16 12 C -0.07 -0.95 5.83 -20.23 -0.12 -1.07 16 13 C -0.11 -0.78 9.98 71.23 0.71 -0.07 16 14 C -0.10 -1.09 9.68 22.28 0.22 -0.87 16 15 C -0.07 -1.11 10.07 22.41 0.23 -0.89 16 16 C -0.20 -4.40 6.54 22.97 0.15 -4.25 16 17 S 0.08 1.65 22.14 -56.49 -1.25 0.40 16 18 C -0.08 -2.64 9.40 22.56 0.21 -2.43 16 19 C -0.21 -8.91 9.14 22.33 0.20 -8.71 16 20 C 0.11 5.02 6.67 22.78 0.15 5.17 16 21 O -0.23 -12.63 8.35 -7.23 -0.06 -12.69 16 22 C -0.40 -23.45 9.94 67.92 0.68 -22.78 16 23 H 0.09 5.31 5.42 -2.91 -0.02 5.30 16 24 C 0.02 0.88 5.49 84.83 0.47 1.35 16 25 N -0.91 -54.32 13.96 21.61 0.30 -54.02 16 26 Si 0.97 46.24 28.62 68.60 1.96 48.20 16 27 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 29 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 30 H 0.07 1.27 7.66 -2.39 -0.02 1.25 16 31 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.07 1.26 7.66 -2.39 -0.02 1.24 16 33 H 0.17 3.44 6.28 -2.91 -0.02 3.42 16 34 H 0.14 2.51 7.09 -2.91 -0.02 2.49 16 35 H 0.14 3.60 6.06 -2.91 -0.02 3.58 16 36 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.09 0.29 8.08 -2.39 -0.02 0.27 16 39 H 0.07 0.50 8.07 -2.39 -0.02 0.48 16 40 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 41 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.14 4.09 6.15 -2.91 -0.02 4.07 16 43 H 0.12 5.72 5.62 -2.91 -0.02 5.71 16 44 H 0.29 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -74.77 388.95 5.10 -69.67 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.06 Total: 14.60 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 5.82 Total: -36.11 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -1.62 Total: -70.50 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.87 Total: -26.26 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.96 Total: 48.20 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.25 Total: 0.40 kcal Total: -74.77 5.10 -69.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007716577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.418 kcal (2) G-P(sol) polarization free energy of solvation -74.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds