Wall clock time and date at job start Tue Mar 31 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86797 * 120.00466 * 2 1 4 4 H 1.48494 * 109.47235 * 270.00071 * 3 2 1 5 5 H 1.48499 * 109.46818 * 30.00214 * 3 2 1 6 6 H 1.48501 * 109.46954 * 149.99544 * 3 2 1 7 7 C 1.38814 * 119.99427 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99472 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00011 * 0.02562 * 7 2 1 10 10 C 1.76209 * 99.99887 * 174.36869 * 9 7 2 11 11 C 1.39110 * 120.18822 * 351.56505 * 10 9 7 12 12 C 1.37916 * 120.05180 * 180.02562 * 11 10 9 13 13 C 1.38660 * 120.43703 * 359.97438 * 12 11 10 14 14 C 1.37806 * 120.38825 * 359.97438 * 13 12 11 15 15 C 1.39695 * 119.93360 * 0.29480 * 14 13 12 16 16 C 1.47393 * 120.21308 * 179.70083 * 15 14 13 17 17 O 1.21623 * 119.99711 * 180.02562 * 16 15 14 18 18 N 1.34768 * 120.00032 * 359.97438 * 16 15 14 19 19 C 1.39853 * 119.99975 * 185.45190 * 18 16 15 20 20 C 1.38953 * 120.04053 * 214.25184 * 19 18 16 21 21 C 1.38132 * 120.05353 * 179.72331 * 20 19 18 22 22 C 1.38191 * 120.13715 * 0.54704 * 21 20 19 23 23 C 1.38853 * 120.08175 * 359.73103 * 22 21 20 24 24 N 1.40265 * 120.02873 * 179.97438 * 23 22 21 25 25 C 1.35069 * 127.38985 * 0.02562 * 24 23 22 26 26 N 1.30735 * 107.27221 * 180.02562 * 25 24 23 27 27 N 1.28417 * 110.65010 * 359.97438 * 26 25 24 28 28 N 1.28950 * 110.20451 * 359.71060 * 27 26 25 29 29 C 1.38709 * 119.94138 * 359.97438 * 23 22 21 30 30 H 0.97005 * 119.99388 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.97503 * 359.97438 * 11 10 9 32 32 H 1.07990 * 119.78017 * 180.02562 * 12 11 10 33 33 H 1.08004 * 119.80349 * 180.02562 * 13 12 11 34 34 H 1.07994 * 120.03253 * 180.02562 * 14 13 12 35 35 H 0.97001 * 120.00720 * 5.45769 * 18 16 15 36 36 H 1.07999 * 119.97100 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.92909 * 180.27444 * 21 20 19 38 38 H 1.08006 * 119.96017 * 179.74627 * 22 21 20 39 39 H 1.07993 * 126.36161 * 359.97438 * 25 24 23 40 40 H 1.07997 * 120.06860 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5471 1.4399 0.7001 7 6 2.0095 -1.2022 0.0005 8 1 3.0895 -1.2022 0.0010 9 16 1.1284 -2.7280 0.0005 10 6 2.4709 -3.8566 -0.1690 11 6 3.7527 -3.3845 -0.4320 12 6 4.8014 -4.2703 -0.5646 13 6 4.5889 -5.6346 -0.4371 14 6 3.3267 -6.1220 -0.1756 15 6 2.2520 -5.2393 -0.0438 16 6 0.8983 -5.7544 0.2294 17 8 -0.0346 -4.9823 0.3430 18 7 0.6941 -7.0808 0.3523 19 6 -0.6050 -7.5778 0.4976 20 6 -0.8374 -8.6971 1.2875 21 6 -2.1212 -9.1848 1.4358 22 6 -3.1763 -8.5685 0.7904 23 6 -2.9499 -7.4532 -0.0050 24 7 -4.0216 -6.8288 -0.6600 25 6 -5.3245 -7.1830 -0.6223 26 7 -5.9790 -6.3355 -1.3723 27 7 -5.1790 -5.4694 -1.8812 28 7 -3.9709 -5.6962 -1.4917 29 6 -1.6628 -6.9569 -0.1513 30 1 -0.4849 0.8401 -0.0004 31 1 3.9267 -2.3234 -0.5332 32 1 5.7947 -3.8990 -0.7684 33 1 5.4176 -6.3192 -0.5425 34 1 3.1677 -7.1856 -0.0769 35 1 1.4481 -7.6909 0.3402 36 1 -0.0140 -9.1836 1.7893 37 1 -2.3001 -10.0522 2.0538 38 1 -4.1784 -8.9547 0.9050 39 1 -5.7468 -8.0126 -0.0749 40 1 -1.4843 -6.0898 -0.7698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007717776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:06 Heat of formation + Delta-G solvation = 157.930049 kcal Electronic energy + Delta-G solvation = -28723.594693 eV Core-core repulsion = 24633.146383 eV Total energy + Delta-G solvation = -4090.448310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.084 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.25821 -40.64253 -39.06131 -37.60595 -35.67819 -34.19786 -32.83079 -32.40536 -31.26925 -30.48795 -30.37332 -29.27176 -25.90490 -25.27262 -24.53544 -23.33888 -22.27608 -22.15845 -21.67549 -20.22605 -19.11568 -18.24058 -17.33448 -16.77478 -16.66752 -16.39265 -16.08919 -15.75741 -15.45606 -15.22116 -14.70694 -14.46611 -14.20121 -13.92966 -13.79168 -13.53501 -13.30606 -13.11312 -12.98646 -12.69378 -12.24747 -12.11828 -11.92197 -11.73779 -11.65485 -11.32089 -11.24447 -11.09958 -11.00867 -10.58231 -10.44224 -10.37749 -9.96948 -9.81762 -9.58338 -8.94721 -8.83294 -8.53434 -8.31191 -8.21003 -6.65253 -6.53031 -4.25143 0.19234 0.93674 1.36683 1.51412 1.65914 1.90520 2.18777 3.02213 3.05094 3.09047 3.15545 3.16685 3.33616 3.52214 3.89287 3.99572 4.08007 4.33990 4.59622 4.64263 4.69718 4.81205 4.88514 4.99069 5.04120 5.09622 5.21675 5.22287 5.27779 5.49686 5.57716 5.79848 5.87897 5.91740 5.98912 5.99872 6.12381 6.25816 6.40388 6.47165 6.69799 6.75532 6.90270 7.02273 7.35486 7.47111 7.49626 8.08550 8.32326 8.41659 8.92752 10.50034 Molecular weight = 367.08amu Principal moments of inertia in cm(-1) A = 0.008623 B = 0.003200 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.492192 B = 8746.702355 C =11475.632461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.084 3.916 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.598 4.598 8 H 0.092 0.908 9 S 0.196 5.804 10 C -0.057 4.057 11 C -0.150 4.150 12 C -0.073 4.073 13 C -0.186 4.186 14 C -0.059 4.059 15 C -0.184 4.184 16 C 0.549 3.451 17 O -0.484 6.484 18 N -0.680 5.680 19 C 0.190 3.810 20 C -0.145 4.145 21 C -0.075 4.075 22 C -0.148 4.148 23 C 0.148 3.852 24 N -0.324 5.324 25 C 0.220 3.780 26 N -0.334 5.334 27 N -0.038 5.038 28 N -0.056 5.056 29 C -0.108 4.108 30 H 0.277 0.723 31 H 0.140 0.860 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.410 0.590 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.238 0.762 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 -21.822 3.012 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.128 4.128 3 Si 0.745 3.255 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.745 4.745 8 H 0.110 0.890 9 S 0.462 5.538 10 C -0.178 4.178 11 C -0.175 4.175 12 C -0.096 4.096 13 C -0.211 4.211 14 C -0.079 4.079 15 C -0.199 4.199 16 C 0.341 3.659 17 O -0.359 6.359 18 N -0.327 5.327 19 C 0.093 3.907 20 C -0.167 4.167 21 C -0.094 4.094 22 C -0.170 4.170 23 C 0.056 3.944 24 N -0.115 5.115 25 C -0.077 4.077 26 N -0.183 5.183 27 N -0.033 5.033 28 N -0.041 5.041 29 C -0.130 4.130 30 H 0.087 0.913 31 H 0.157 0.843 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.248 0.752 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.254 0.746 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.744 -19.723 2.289 20.044 hybrid contribution 2.656 0.135 0.532 2.712 sum -0.088 -19.589 2.821 19.791 Atomic orbital electron populations 1.69971 1.06268 1.28703 1.43564 1.25128 0.94989 0.99757 0.92878 0.86125 0.79717 0.80806 0.78820 1.19746 1.20378 1.19151 1.24046 0.97033 0.93889 1.59489 0.89002 1.84752 1.02145 0.93145 1.73708 1.23102 1.00957 0.96878 0.96831 1.21446 0.91724 1.00955 1.03373 1.21118 0.98188 0.93373 0.96915 1.20634 0.96412 0.95356 1.08651 1.20867 0.92622 0.97286 0.97118 1.18850 0.91878 0.92865 1.16338 1.18536 0.89708 0.80787 0.76897 1.90850 1.43298 1.54724 1.46982 1.43575 1.06139 1.08586 1.74406 1.17458 0.85214 0.93764 0.94218 1.21101 0.98187 0.98075 0.99288 1.20716 0.91070 0.99395 0.98208 1.20738 1.00731 0.95641 0.99898 1.17337 0.85382 0.94519 0.97203 1.49118 1.07257 1.21312 1.33767 1.27363 0.81072 1.00783 0.98482 1.74456 1.27260 1.03871 1.12665 1.78136 0.94681 1.15748 1.14765 1.82922 1.16330 0.98563 1.06299 1.21014 0.89481 1.02033 1.00503 0.91307 0.84268 0.86849 0.86901 0.87166 0.75225 0.84656 0.84196 0.84910 0.74622 0.82445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.54 13.22 55.49 0.73 -23.81 16 2 C 0.08 2.29 5.49 -17.46 -0.10 2.19 16 3 Si 0.92 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 7 C -0.60 -16.18 8.98 30.95 0.28 -15.90 16 8 H 0.09 2.34 5.03 -52.49 -0.26 2.08 16 9 S 0.20 5.13 18.56 -107.50 -2.00 3.13 16 10 C -0.06 -1.25 6.14 -38.39 -0.24 -1.48 16 11 C -0.15 -2.99 9.20 -39.38 -0.36 -3.35 16 12 C -0.07 -1.17 10.03 -39.54 -0.40 -1.57 16 13 C -0.19 -2.62 10.02 -39.58 -0.40 -3.02 16 14 C -0.06 -0.84 9.53 -39.20 -0.37 -1.21 16 15 C -0.18 -3.36 5.89 -104.76 -0.62 -3.98 16 16 C 0.55 9.82 7.47 -12.54 -0.09 9.72 16 17 O -0.48 -10.62 11.54 5.26 0.06 -10.56 16 18 N -0.68 -8.65 5.28 -10.86 -0.06 -8.71 16 19 C 0.19 2.32 6.25 -83.74 -0.52 1.79 16 20 C -0.14 -1.21 9.96 -39.36 -0.39 -1.60 16 21 C -0.07 -0.50 10.03 -39.64 -0.40 -0.90 16 22 C -0.15 -1.15 9.49 -39.37 -0.37 -1.53 16 23 C 0.15 1.79 6.70 -83.60 -0.56 1.23 16 24 N -0.32 -4.35 3.85 -11.76 -0.05 -4.39 16 25 C 0.22 2.29 12.16 -90.15 -1.10 1.20 16 26 N -0.33 -4.76 12.15 29.64 0.36 -4.40 16 27 N -0.04 -0.66 13.39 60.35 0.81 0.14 16 28 N -0.06 -0.99 13.33 60.35 0.80 -0.18 16 29 C -0.11 -1.56 8.30 -39.21 -0.33 -1.89 16 30 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.14 2.91 5.09 -52.49 -0.27 2.64 16 32 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.11 1.09 6.42 -52.49 -0.34 0.75 16 35 H 0.41 3.69 6.87 -40.82 -0.28 3.41 16 36 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 37 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 38 H 0.13 0.55 6.88 -52.48 -0.36 0.19 16 39 H 0.24 0.94 7.19 -52.49 -0.38 0.56 16 40 H 0.16 2.87 6.22 -52.49 -0.33 2.55 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -35.38 362.07 -7.90 -43.28 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -3.04 Total: 4.88 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -5.96 Total: -20.29 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 2.60 Total: -41.35 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.06 Total: -10.56 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -2.00 Total: 3.13 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.38 -7.90 -43.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007717776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.205 kcal (2) G-P(sol) polarization free energy of solvation -35.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds