Wall clock time and date at job start Tue Mar 31 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 119.99901 * 2 1 4 4 C 1.52999 * 109.47487 * 60.00480 * 3 2 1 5 5 C 1.52997 * 109.47317 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 4 3 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 8 8 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 9 9 S 1.65597 * 119.99891 * 180.02562 * 2 1 3 10 10 O 1.42102 * 106.40527 * 23.53404 * 9 2 1 11 11 O 1.42101 * 106.40525 * 156.45738 * 9 2 1 12 12 C 1.76204 * 107.21572 * 269.99717 * 9 2 1 13 13 C 1.38378 * 119.84179 * 269.72013 * 12 9 2 14 14 C 1.37939 * 120.14755 * 179.76202 * 13 12 9 15 15 C 1.39664 * 119.84591 * 0.53867 * 14 13 12 16 16 C 1.47669 * 120.15378 * 179.69755 * 15 14 13 17 17 O 1.21501 * 120.00184 * 180.02562 * 16 15 14 18 18 O 1.34736 * 119.99602 * 0.02562 * 16 15 14 19 19 C 1.34848 * 116.99722 * 179.97438 * 18 16 15 20 20 H 1.08006 * 120.00159 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00108 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00021 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47158 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47040 * 119.99861 * 23 21 19 26 26 H 1.48502 * 109.46777 * 239.99510 * 23 21 19 27 27 C 1.39661 * 119.69335 * 359.72271 * 15 14 13 28 28 C 1.37930 * 119.84749 * 359.97438 * 27 15 14 29 29 H 1.08997 * 109.47544 * 89.99666 * 1 2 3 30 30 H 1.08998 * 109.47317 * 209.99996 * 1 2 3 31 31 H 1.09003 * 109.47308 * 329.99779 * 1 2 3 32 32 H 1.09002 * 109.47021 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46929 * 59.99046 * 4 3 2 34 34 H 1.09002 * 109.46716 * 299.99851 * 4 3 2 35 35 H 1.09002 * 109.47153 * 299.99641 * 5 4 3 36 36 H 1.09001 * 109.46832 * 179.97438 * 5 4 3 37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 38 38 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 39 39 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 40 40 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 41 41 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 42 42 H 1.09001 * 109.47289 * 180.02562 * 8 7 6 43 43 H 1.07992 * 119.92773 * 0.02999 * 13 12 9 44 44 H 1.08008 * 120.07205 * 180.23544 * 14 13 12 45 45 H 0.97001 * 120.00424 * 179.97438 * 22 21 19 46 46 H 1.08003 * 120.07740 * 179.97438 * 27 15 14 47 47 H 1.08004 * 119.92773 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 1.8280 2.0710 1.2493 5 6 2.5934 3.3957 1.2495 6 6 2.2243 4.1983 0.0003 7 6 2.5939 3.3961 -1.2490 8 6 1.8284 2.0713 -1.2493 9 16 2.2930 -1.4341 -0.0006 10 8 1.4113 -2.4063 -0.5454 11 8 3.5759 -1.1566 -0.5450 12 6 2.5538 -1.8865 1.6822 13 6 3.6980 -1.4680 2.3384 14 6 3.9062 -1.8143 3.6572 15 6 2.9644 -2.5986 4.3269 16 6 3.1837 -2.9790 5.7368 17 8 2.3628 -3.6618 6.3166 18 8 4.2941 -2.5688 6.3803 19 6 4.4328 -2.9505 7.6662 20 1 3.6723 -3.5582 8.1341 21 6 5.5529 -2.5625 8.3885 22 7 6.4784 -1.8236 7.8190 23 14 5.7452 -3.0918 10.1696 24 1 4.5747 -3.9125 10.5712 25 1 6.9865 -3.8938 10.3163 26 1 5.8273 -1.8894 11.0372 27 6 1.8145 -3.0220 3.6568 28 6 1.6161 -2.6630 2.3399 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 3.2691 1.0695 -0.0005 33 1 2.0912 1.4994 2.1392 34 1 0.7563 2.2702 1.2493 35 1 3.6650 3.1962 1.2497 36 1 2.3298 3.9674 2.1394 37 1 1.1528 4.3978 0.0001 38 1 2.7700 5.1419 0.0004 39 1 2.3314 3.9679 -2.1389 40 1 3.6655 3.1964 -1.2487 41 1 0.7568 2.2709 -1.2495 42 1 2.0920 1.4996 -2.1390 43 1 4.4275 -0.8653 1.8180 44 1 4.7979 -1.4838 4.1693 45 1 7.2609 -1.5520 8.3238 46 1 1.0824 -3.6290 4.1686 47 1 0.7275 -2.9901 1.8203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007824807.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:27 Heat of formation + Delta-G solvation = -139.057566 kcal Electronic energy + Delta-G solvation = -31397.871690 eV Core-core repulsion = 27058.483703 eV Total energy + Delta-G solvation = -4339.387987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.133 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -39.64682 -39.29827 -38.25871 -37.36120 -35.93957 -35.36819 -35.33135 -32.43479 -31.35292 -31.04149 -30.91874 -29.85734 -26.54795 -25.96613 -24.00422 -22.88840 -22.60314 -22.38620 -20.53209 -19.89837 -19.15983 -18.10916 -17.94380 -17.64189 -17.03246 -16.62058 -15.60091 -15.30634 -14.86228 -14.72532 -14.65628 -14.54971 -14.46263 -14.37619 -14.23180 -14.17447 -13.43624 -13.38249 -13.30852 -12.85813 -12.73954 -12.68600 -12.44521 -12.42684 -12.18400 -12.13169 -11.83095 -11.77910 -11.44090 -11.42399 -11.38698 -11.12078 -10.94506 -10.85029 -10.65697 -10.57635 -10.52735 -10.49099 -10.03386 -9.33862 -9.25688 -9.12464 -8.94385 -8.78566 -6.65740 -4.25554 0.21145 0.61996 1.44695 2.69049 2.98277 3.07800 3.15546 3.20938 3.62878 3.74569 4.07977 4.14648 4.30911 4.31818 4.46118 4.52240 4.71410 4.84552 4.91909 4.94100 4.94841 4.96751 5.10028 5.15177 5.20833 5.29190 5.33634 5.39467 5.43623 5.48205 5.49632 5.55894 5.75717 5.77376 5.79328 5.85282 5.88586 5.89214 5.98921 6.02293 6.04462 6.18010 6.20261 6.35668 6.47348 6.76389 6.92133 7.18831 7.71999 8.50171 8.82325 9.60508 10.50980 Molecular weight = 367.13amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.002512 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.378512 B =11145.817032 C =12457.581093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.996 5.996 3 C 0.146 3.854 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.121 4.121 7 C -0.119 4.119 8 C -0.124 4.124 9 S 2.692 3.308 10 O -0.957 6.957 11 O -0.956 6.956 12 C -0.675 4.675 13 C -0.030 4.030 14 C -0.097 4.097 15 C -0.025 4.025 16 C 0.416 3.584 17 O -0.549 6.549 18 O -0.197 6.197 19 C -0.369 4.369 20 H 0.101 0.899 21 C 0.042 3.958 22 N -0.849 5.849 23 Si 0.948 3.052 24 H -0.263 1.263 25 H -0.273 1.273 26 H -0.274 1.274 27 C -0.096 4.096 28 C -0.033 4.033 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.140 0.860 44 H 0.151 0.849 45 H 0.274 0.726 46 H 0.143 0.857 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 11.497 -17.297 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.833 5.833 3 C 0.041 3.959 4 C -0.171 4.171 5 C -0.158 4.158 6 C -0.158 4.158 7 C -0.157 4.157 8 C -0.163 4.163 9 S 2.785 3.215 10 O -0.947 6.947 11 O -0.946 6.946 12 C -0.763 4.763 13 C -0.050 4.050 14 C -0.116 4.116 15 C -0.026 4.026 16 C 0.264 3.736 17 O -0.448 6.448 18 O -0.104 6.104 19 C -0.445 4.445 20 H 0.119 0.881 21 C -0.165 4.165 22 N -0.485 5.485 23 Si 0.771 3.229 24 H -0.187 1.187 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.115 4.115 28 C -0.053 4.053 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.158 0.842 44 H 0.169 0.831 45 H 0.084 0.916 46 H 0.160 0.840 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.942 10.948 -17.807 22.736 hybrid contribution 0.082 -0.210 1.746 1.761 sum -8.860 10.738 -16.061 21.255 Atomic orbital electron populations 1.21470 0.78273 1.03366 1.02259 1.57569 1.15295 1.20956 1.89526 1.21022 0.96679 0.82635 0.95588 1.21947 1.01125 0.96342 0.97730 1.21526 1.00659 0.95540 0.98064 1.21568 1.01342 0.98376 0.94558 1.21531 1.00656 0.95502 0.98042 1.21851 1.00946 0.96027 0.97489 1.01960 0.73158 0.72328 0.74090 1.93569 1.66129 1.58415 1.76596 1.93568 1.40038 1.84359 1.76627 1.30901 1.04612 1.14495 1.26266 1.20825 0.94249 0.95698 0.94214 1.21753 0.99595 0.96215 0.94077 1.19803 0.94760 0.95893 0.92177 1.20676 0.82831 0.82967 0.87105 1.90643 1.46077 1.39994 1.68081 1.83877 1.36979 1.62880 1.26638 1.21473 1.07164 1.32340 0.83519 0.88094 1.25468 0.94357 0.95902 1.00730 1.69971 1.08926 1.32094 1.37465 0.85533 0.79011 0.78743 0.79566 1.18696 1.19877 1.19895 1.21334 0.96950 0.99229 0.93986 1.20719 0.97118 0.93466 0.93963 0.92232 0.90898 0.90653 0.87987 0.91006 0.91216 0.91440 0.91475 0.92009 0.91901 0.91680 0.91481 0.91339 0.91421 0.84177 0.83149 0.91597 0.83959 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 9.35 59.85 0.56 1.24 16 2 N -1.00 -9.49 3.07 -114.61 -0.35 -9.84 16 3 C 0.15 1.28 2.51 -67.93 -0.17 1.11 16 4 C -0.13 -1.06 5.18 -26.73 -0.14 -1.20 16 5 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 6 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 7 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 8 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 9 S 2.69 33.97 5.64 -107.50 -0.61 33.37 16 10 O -0.96 -13.86 16.34 -57.17 -0.93 -14.79 16 11 O -0.96 -14.01 15.82 -57.17 -0.90 -14.91 16 12 C -0.67 -9.43 5.98 -39.48 -0.24 -9.67 16 13 C -0.03 -0.45 9.50 -39.64 -0.38 -0.83 16 14 C -0.10 -1.72 9.62 -39.16 -0.38 -2.10 16 15 C -0.02 -0.49 5.87 -104.98 -0.62 -1.11 16 16 C 0.42 10.34 7.84 34.58 0.27 10.61 16 17 O -0.55 -14.69 15.59 -19.27 -0.30 -14.99 16 18 O -0.20 -5.47 8.99 -21.63 -0.19 -5.67 16 19 C -0.37 -10.52 9.65 30.95 0.30 -10.22 16 20 H 0.10 2.90 6.86 -52.48 -0.36 2.54 16 21 C 0.04 1.11 5.50 -17.52 -0.10 1.02 16 22 N -0.85 -23.55 13.67 55.49 0.76 -22.79 16 23 Si 0.95 20.29 29.55 -169.99 -5.02 15.27 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 C -0.10 -1.62 9.60 -39.16 -0.38 -1.99 16 28 C -0.03 -0.47 9.50 -39.64 -0.38 -0.85 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.52 7.79 -51.93 -0.40 0.12 16 31 H 0.07 0.43 6.43 -51.93 -0.33 0.10 16 32 H 0.10 0.97 6.91 -51.93 -0.36 0.61 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.50 6.66 -51.93 -0.35 0.15 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.14 1.75 7.60 -52.49 -0.40 1.36 16 44 H 0.15 2.77 7.61 -52.48 -0.40 2.37 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.14 2.32 7.65 -52.48 -0.40 1.92 16 47 H 0.14 1.61 7.60 -52.48 -0.40 1.21 16 LS Contribution 397.44 15.07 5.99 5.99 Total: -1.00 -34.14 397.44 -10.56 -44.69 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.74 Total: 1.60 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -2.25 Total: -17.92 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.41 Total: -32.63 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -2.33 Total: -50.37 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 33.97 SS G_CDS: -0.61 Total: 33.37 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.14 -10.56 -44.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007824807.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.364 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds