Wall clock time and date at job start Tue Mar 31 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48507 * 109.46781 * 269.99551 * 3 2 1 5 5 H 1.48496 * 109.47175 * 29.99688 * 3 2 1 6 6 H 1.48499 * 109.47330 * 149.99920 * 3 2 1 7 7 C 1.37879 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00134 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00267 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47390 * 180.02562 * 9 7 2 11 11 C 1.36828 * 124.95273 * 265.02780 * 10 9 7 12 12 C 1.35423 * 109.72280 * 179.97438 * 11 10 9 13 13 C 1.48343 * 126.63318 * 180.02562 * 12 11 10 14 14 C 1.34358 * 122.34396 * 359.96644 * 13 12 11 15 15 S 1.76189 * 108.31809 * 179.97438 * 14 13 12 16 16 C 1.76088 * 90.09606 * 359.97438 * 15 14 13 17 17 N 1.38556 * 125.28547 * 180.02562 * 16 15 14 18 18 C 1.46502 * 119.99867 * 359.97147 * 17 16 15 19 19 C 1.54271 * 110.03184 * 272.16966 * 18 17 16 20 20 C 1.54888 * 104.19107 * 217.10659 * 19 18 17 21 21 C 1.54890 * 102.75327 * 37.94586 * 20 19 18 22 22 C 1.53873 * 110.02767 * 155.00147 * 18 17 16 23 23 N 1.29764 * 109.42624 * 359.75600 * 16 15 14 24 24 C 1.47135 * 106.73304 * 0.02562 * 12 11 10 25 25 C 1.39442 * 133.94721 * 179.97438 * 24 12 11 26 26 C 1.36685 * 119.79112 * 180.02562 * 25 24 12 27 27 C 1.38815 * 120.48550 * 359.97438 * 26 25 24 28 28 C 1.37745 * 120.64068 * 359.97438 * 27 26 25 29 29 C 1.37753 * 124.95101 * 85.00269 * 10 9 7 30 30 H 0.96998 * 120.00145 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46938 * 60.00477 * 9 7 2 32 32 H 1.09004 * 109.47476 * 300.00414 * 9 7 2 33 33 H 1.08002 * 125.13721 * 359.97438 * 11 10 9 34 34 H 1.08003 * 125.83725 * 359.97438 * 14 13 12 35 35 H 0.96999 * 119.99573 * 179.97438 * 17 16 15 36 36 H 1.08997 * 110.01778 * 33.60844 * 18 17 16 37 37 H 1.09001 * 110.48633 * 335.78606 * 19 18 17 38 38 H 1.08997 * 110.48623 * 98.43070 * 19 18 17 39 39 H 1.09000 * 110.75789 * 279.62429 * 20 19 18 40 40 H 1.09008 * 110.91152 * 156.33079 * 20 19 18 41 41 H 1.08996 * 110.48842 * 203.38041 * 21 20 19 42 42 H 1.08993 * 110.48723 * 80.72910 * 21 20 19 43 43 H 1.08998 * 110.03129 * 238.56388 * 22 18 17 44 44 H 1.08993 * 110.03823 * 0.02562 * 22 18 17 45 45 H 1.08006 * 120.10681 * 0.02562 * 25 24 12 46 46 H 1.07993 * 119.75977 * 179.72196 * 26 25 24 47 47 H 1.07993 * 119.67349 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.10261 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 4.3532 -3.2817 1.1173 12 6 4.7591 -4.5242 0.7631 13 6 5.2225 -5.5978 1.6759 14 6 5.2875 -5.4309 3.0074 15 16 5.8809 -6.9268 3.7247 16 6 5.9878 -7.6549 2.1250 17 7 6.4167 -8.9455 1.8602 18 6 6.8276 -9.8212 2.9605 19 6 8.3262 -9.6185 3.2657 20 6 8.8376 -11.0378 3.6164 21 6 8.0586 -11.9368 2.6244 22 6 6.6574 -11.2951 2.5527 23 7 5.5970 -6.7970 1.2333 24 6 4.6514 -4.6034 -0.7022 25 6 4.9172 -5.6009 -1.6396 26 6 4.7087 -5.3572 -2.9682 27 6 4.2334 -4.1236 -3.3918 28 6 3.9635 -3.1252 -2.4821 29 6 4.1697 -3.3524 -1.1246 30 1 -0.4850 0.8400 -0.0004 31 1 3.8751 -0.6797 0.8895 32 1 3.8745 -0.6808 -0.8905 33 1 4.3144 -2.9053 2.1289 34 1 5.0215 -4.5333 3.5459 35 1 6.4448 -9.2692 0.9462 36 1 6.2328 -9.6084 3.8487 37 1 8.8452 -9.2317 2.3887 38 1 8.4552 -8.9461 4.1139 39 1 8.5899 -11.2941 4.6465 40 1 9.9117 -11.1170 3.4479 41 1 7.9923 -12.9561 3.0046 42 1 8.5344 -11.9244 1.6439 43 1 5.9808 -11.7979 3.2437 44 1 6.2696 -11.3590 1.5361 45 1 5.2868 -6.5630 -1.3168 46 1 4.9190 -6.1285 -3.6942 47 1 4.0737 -3.9451 -4.4449 48 1 3.5944 -2.1686 -2.8213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007843300.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:35 Heat of formation + Delta-G solvation = 97.244274 kcal Electronic energy + Delta-G solvation = -29183.785828 eV Core-core repulsion = 25330.079423 eV Total energy + Delta-G solvation = -3853.706405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.73187 -39.43876 -38.53437 -36.49118 -34.72150 -33.38023 -31.90486 -29.87619 -29.79460 -29.20088 -28.20679 -27.38392 -26.76820 -24.12012 -22.77958 -21.87949 -21.32384 -21.13346 -21.01105 -19.99139 -18.62741 -17.98250 -17.15402 -16.58031 -16.12235 -16.02125 -15.69455 -15.47876 -14.89201 -14.85149 -14.51946 -14.27242 -13.85516 -13.74715 -13.60984 -13.26814 -13.21385 -12.80907 -12.59553 -12.52309 -12.08257 -12.01529 -11.97436 -11.62187 -11.60207 -11.49366 -11.41082 -11.26635 -11.08616 -10.99965 -10.90399 -10.75466 -10.49277 -10.18332 -10.05024 -9.67400 -9.38143 -9.20636 -8.83609 -8.74931 -7.80476 -7.53333 -6.70008 -6.30578 -4.34859 1.10192 1.26689 1.76165 1.99521 2.23556 2.80482 2.85260 3.11070 3.17580 3.19676 3.64876 3.88888 4.03135 4.14908 4.17081 4.42863 4.58119 4.77344 4.92847 4.95616 4.99629 5.01620 5.07433 5.18947 5.26180 5.36666 5.38686 5.45479 5.54064 5.58665 5.62116 5.68899 5.69988 5.74455 5.83018 5.87362 6.01725 6.14661 6.23017 6.34248 6.42591 6.45595 6.51430 6.58856 6.72090 7.05335 7.17585 7.24279 7.27278 7.34615 7.46380 7.89367 7.93633 8.17018 8.28039 8.75378 9.24757 10.81660 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.002171 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.447021 B =12893.522295 C =14146.626408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.079 3.921 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.207 3.793 10 N -0.443 5.443 11 C 0.107 3.893 12 C -0.151 4.151 13 C 0.216 3.784 14 C -0.304 4.304 15 S 0.022 5.978 16 C 0.350 3.650 17 N -0.691 5.691 18 C 0.149 3.851 19 C -0.143 4.143 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.130 4.130 23 N -0.532 5.532 24 C -0.082 4.082 25 C -0.066 4.066 26 C -0.159 4.159 27 C -0.115 4.115 28 C -0.112 4.112 29 C 0.103 3.897 30 H 0.269 0.731 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.410 0.590 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.122 0.878 46 H 0.112 0.888 47 H 0.116 0.884 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.930 -20.311 5.993 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.100 0.900 9 C 0.088 3.912 10 N -0.119 5.119 11 C -0.027 4.027 12 C -0.161 4.161 13 C 0.089 3.911 14 C -0.444 4.444 15 S 0.267 5.733 16 C -0.023 4.023 17 N -0.332 5.332 18 C 0.043 3.957 19 C -0.182 4.182 20 C -0.162 4.162 21 C -0.162 4.162 22 C -0.168 4.168 23 N -0.256 5.256 24 C -0.087 4.087 25 C -0.085 4.085 26 C -0.178 4.178 27 C -0.135 4.135 28 C -0.132 4.132 29 C -0.004 4.004 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.183 0.817 34 H 0.189 0.811 35 H 0.249 0.751 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.140 0.860 46 H 0.130 0.870 47 H 0.134 0.866 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.853 -20.373 6.630 27.259 hybrid contribution -0.201 1.629 -0.785 1.819 sum 16.653 -18.744 5.845 25.745 Atomic orbital electron populations 1.69875 1.06187 1.27424 1.48583 1.24840 0.94816 0.98868 0.94010 0.86901 0.80325 0.83784 0.79078 1.19666 1.20534 1.18914 1.21219 0.88104 0.95559 1.53520 0.89976 1.20099 0.96818 0.75720 0.98596 1.44367 1.50563 1.13309 1.03635 1.21734 0.98150 0.90960 0.91848 1.17803 1.15201 0.92591 0.90532 1.17574 0.95350 0.88869 0.89323 1.25965 1.20016 1.01989 0.96445 1.84576 1.68872 1.09308 1.10532 1.24256 0.96227 0.90518 0.91338 1.44066 1.71366 1.07949 1.09841 1.21771 0.95392 0.89431 0.89094 1.22947 0.95173 0.97636 1.02458 1.22472 0.99956 0.94328 0.99407 1.22367 0.94895 0.99006 0.99948 1.22412 0.98234 0.93450 1.02716 1.66551 1.22938 1.02586 1.33562 1.18851 1.04267 0.93575 0.91991 1.20231 0.98613 0.98046 0.91613 1.20513 1.04585 0.97282 0.95447 1.20674 1.01068 0.93304 0.98416 1.20120 1.03181 1.00305 0.89631 1.18263 1.02270 0.91019 0.88869 0.92095 0.93598 0.94316 0.81679 0.81109 0.75088 0.89753 0.90520 0.90896 0.91181 0.91188 0.91247 0.91318 0.90366 0.90584 0.85985 0.87030 0.86563 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.98 13.96 55.43 0.77 -25.21 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 19.87 27.47 -169.99 -4.67 15.20 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 7 C -0.55 -14.87 9.94 -34.44 -0.34 -15.21 16 8 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 9 C 0.21 4.74 4.81 -5.19 -0.02 4.72 16 10 N -0.44 -9.58 2.76 -115.38 -0.32 -9.90 16 11 C 0.11 2.06 10.82 -16.33 -0.18 1.88 16 12 C -0.15 -2.92 6.27 -103.13 -0.65 -3.57 16 13 C 0.22 3.74 6.68 -84.49 -0.56 3.18 16 14 C -0.30 -4.53 10.78 29.36 0.32 -4.21 16 15 S 0.02 0.27 22.10 -107.50 -2.38 -2.11 16 16 C 0.35 4.61 8.44 -87.67 -0.74 3.87 16 17 N -0.69 -6.64 5.19 -53.32 -0.28 -6.91 16 18 C 0.15 1.06 3.24 -66.81 -0.22 0.85 16 19 C -0.14 -0.94 6.53 -25.07 -0.16 -1.11 16 20 C -0.12 -0.61 6.91 -24.74 -0.17 -0.78 16 21 C -0.12 -0.57 6.83 -25.07 -0.17 -0.74 16 22 C -0.13 -0.69 6.57 -25.61 -0.17 -0.86 16 23 N -0.53 -8.68 9.69 -10.39 -0.10 -8.78 16 24 C -0.08 -1.67 6.30 -104.97 -0.66 -2.33 16 25 C -0.07 -1.21 9.86 -39.69 -0.39 -1.60 16 26 C -0.16 -2.61 9.98 -39.93 -0.40 -3.01 16 27 C -0.12 -1.95 10.01 -39.55 -0.40 -2.35 16 28 C -0.11 -2.21 9.99 -39.41 -0.39 -2.61 16 29 C 0.10 2.20 6.80 -83.99 -0.57 1.63 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.05 1.00 7.17 -51.93 -0.37 0.62 16 32 H 0.04 0.87 7.57 -51.93 -0.39 0.47 16 33 H 0.17 2.67 7.63 -52.49 -0.40 2.27 16 34 H 0.17 2.25 7.60 -52.48 -0.40 1.85 16 35 H 0.41 3.61 8.44 -40.82 -0.34 3.26 16 36 H 0.08 0.64 7.28 -51.93 -0.38 0.26 16 37 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.41 7.62 -51.93 -0.40 0.01 16 45 H 0.12 2.09 7.37 -52.48 -0.39 1.70 16 46 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 47 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 48 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 406.26 15.07 6.12 6.12 Total: -1.00 -31.50 406.26 -13.71 -45.20 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.88 Total: 6.56 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -5.98 Total: -20.18 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.08 Total: -50.80 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.38 Total: -2.11 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.50 -13.71 -45.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007843300.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.448 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds