Wall clock time and date at job start Tue Mar 31 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48507 * 109.46781 * 269.99551 * 3 2 1 5 5 H 1.48496 * 109.47175 * 29.99688 * 3 2 1 6 6 H 1.48499 * 109.47330 * 149.99920 * 3 2 1 7 7 C 1.37879 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00134 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00267 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47390 * 180.02562 * 9 7 2 11 11 C 1.36828 * 124.95273 * 265.02780 * 10 9 7 12 12 C 1.35423 * 109.72280 * 179.97438 * 11 10 9 13 13 C 1.48343 * 126.63318 * 180.02562 * 12 11 10 14 14 C 1.34358 * 122.34396 * 359.96644 * 13 12 11 15 15 S 1.76189 * 108.31809 * 179.97438 * 14 13 12 16 16 C 1.76088 * 90.09606 * 359.97438 * 15 14 13 17 17 N 1.38556 * 125.28547 * 180.02562 * 16 15 14 18 18 C 1.46502 * 119.99867 * 359.97147 * 17 16 15 19 19 C 1.54271 * 110.03184 * 272.16966 * 18 17 16 20 20 C 1.54888 * 104.19107 * 217.10659 * 19 18 17 21 21 C 1.54890 * 102.75327 * 37.94586 * 20 19 18 22 22 C 1.53873 * 110.02767 * 155.00147 * 18 17 16 23 23 N 1.29764 * 109.42624 * 359.75600 * 16 15 14 24 24 C 1.47135 * 106.73304 * 0.02562 * 12 11 10 25 25 C 1.39442 * 133.94721 * 179.97438 * 24 12 11 26 26 C 1.36685 * 119.79112 * 180.02562 * 25 24 12 27 27 C 1.38815 * 120.48550 * 359.97438 * 26 25 24 28 28 C 1.37745 * 120.64068 * 359.97438 * 27 26 25 29 29 C 1.37753 * 124.95101 * 85.00269 * 10 9 7 30 30 H 0.96998 * 120.00145 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46938 * 60.00477 * 9 7 2 32 32 H 1.09004 * 109.47476 * 300.00414 * 9 7 2 33 33 H 1.08002 * 125.13721 * 359.97438 * 11 10 9 34 34 H 1.08003 * 125.83725 * 359.97438 * 14 13 12 35 35 H 0.96999 * 119.99573 * 179.97438 * 17 16 15 36 36 H 1.08997 * 110.01778 * 33.60844 * 18 17 16 37 37 H 1.09001 * 110.48633 * 335.78606 * 19 18 17 38 38 H 1.08997 * 110.48623 * 98.43070 * 19 18 17 39 39 H 1.09000 * 110.75789 * 279.62429 * 20 19 18 40 40 H 1.09008 * 110.91152 * 156.33079 * 20 19 18 41 41 H 1.08996 * 110.48842 * 203.38041 * 21 20 19 42 42 H 1.08993 * 110.48723 * 80.72910 * 21 20 19 43 43 H 1.08998 * 110.03129 * 238.56388 * 22 18 17 44 44 H 1.08993 * 110.03823 * 0.02562 * 22 18 17 45 45 H 1.08006 * 120.10681 * 0.02562 * 25 24 12 46 46 H 1.07993 * 119.75977 * 179.72196 * 26 25 24 47 47 H 1.07993 * 119.67349 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.10261 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 4.3532 -3.2817 1.1173 12 6 4.7591 -4.5242 0.7631 13 6 5.2225 -5.5978 1.6759 14 6 5.2875 -5.4309 3.0074 15 16 5.8809 -6.9268 3.7247 16 6 5.9878 -7.6549 2.1250 17 7 6.4167 -8.9455 1.8602 18 6 6.8276 -9.8212 2.9605 19 6 8.3262 -9.6185 3.2657 20 6 8.8376 -11.0378 3.6164 21 6 8.0586 -11.9368 2.6244 22 6 6.6574 -11.2951 2.5527 23 7 5.5970 -6.7970 1.2333 24 6 4.6514 -4.6034 -0.7022 25 6 4.9172 -5.6009 -1.6396 26 6 4.7087 -5.3572 -2.9682 27 6 4.2334 -4.1236 -3.3918 28 6 3.9635 -3.1252 -2.4821 29 6 4.1697 -3.3524 -1.1246 30 1 -0.4850 0.8400 -0.0004 31 1 3.8751 -0.6797 0.8895 32 1 3.8745 -0.6808 -0.8905 33 1 4.3144 -2.9053 2.1289 34 1 5.0215 -4.5333 3.5459 35 1 6.4448 -9.2692 0.9462 36 1 6.2328 -9.6084 3.8487 37 1 8.8452 -9.2317 2.3887 38 1 8.4552 -8.9461 4.1139 39 1 8.5899 -11.2941 4.6465 40 1 9.9117 -11.1170 3.4479 41 1 7.9923 -12.9561 3.0046 42 1 8.5344 -11.9244 1.6439 43 1 5.9808 -11.7979 3.2437 44 1 6.2696 -11.3590 1.5361 45 1 5.2868 -6.5630 -1.3168 46 1 4.9190 -6.1285 -3.6942 47 1 4.0737 -3.9451 -4.4449 48 1 3.5944 -2.1686 -2.8213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007843300.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:34 Heat of formation + Delta-G solvation = 82.091888 kcal Electronic energy + Delta-G solvation = -29184.442884 eV Core-core repulsion = 25330.079423 eV Total energy + Delta-G solvation = -3854.363461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.18978 -40.35187 -39.32796 -37.93704 -35.68974 -35.13889 -33.52994 -31.38297 -31.04432 -29.68564 -29.59601 -28.50909 -27.94496 -25.45284 -24.35894 -23.29468 -22.55483 -21.95199 -21.58278 -21.20412 -19.82772 -19.23006 -19.03207 -17.70862 -17.45615 -17.05456 -16.64475 -16.41880 -16.21542 -16.13842 -15.79871 -15.42394 -15.08367 -14.90543 -14.81732 -14.61332 -14.40055 -14.26001 -13.92427 -13.71951 -13.49029 -13.22020 -13.15650 -12.75351 -12.62667 -12.50535 -12.47098 -12.26424 -12.02847 -11.96363 -11.92678 -11.85939 -11.72546 -11.57222 -11.47416 -11.22412 -10.92076 -10.50975 -10.48997 -9.94041 -9.04745 -8.87518 -8.42006 -8.06193 -6.52931 -0.06909 0.24589 0.37093 0.82084 0.87837 1.32977 1.34051 1.44175 1.46961 1.96312 2.16837 2.24303 2.55588 2.90496 3.13865 3.52354 3.66905 3.70273 3.88318 3.91522 3.98123 4.23143 4.30282 4.36990 4.41866 4.48151 4.49098 4.54937 4.56680 4.59181 4.61583 4.78087 4.78576 4.84635 4.92460 4.96066 4.99050 5.05542 5.12114 5.22783 5.23591 5.24993 5.27655 5.29948 5.47996 5.65018 5.77840 5.82284 5.91783 5.99085 6.04458 6.38583 6.44619 6.47006 6.56376 7.08691 7.12081 8.74731 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.002171 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.447021 B =12893.522295 C =14146.626408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.020 3.980 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.238 1.238 7 C -0.551 4.551 8 H 0.025 0.975 9 C 0.218 3.782 10 N -0.461 5.461 11 C 0.087 3.913 12 C -0.151 4.151 13 C 0.190 3.810 14 C -0.312 4.312 15 S 0.076 5.924 16 C 0.344 3.656 17 N -0.679 5.679 18 C 0.143 3.857 19 C -0.142 4.142 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.126 4.126 23 N -0.564 5.564 24 C -0.106 4.106 25 C -0.073 4.073 26 C -0.152 4.152 27 C -0.105 4.105 28 C -0.141 4.141 29 C 0.072 3.928 30 H 0.273 0.727 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.188 0.812 34 H 0.183 0.817 35 H 0.414 0.586 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.130 0.870 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.378 -21.667 6.403 29.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.180 4.180 3 Si 0.772 3.228 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.161 1.161 7 C -0.589 4.589 8 H 0.043 0.957 9 C 0.097 3.903 10 N -0.139 5.139 11 C -0.045 4.045 12 C -0.161 4.161 13 C 0.062 3.938 14 C -0.453 4.453 15 S 0.322 5.678 16 C -0.029 4.029 17 N -0.320 5.320 18 C 0.038 3.962 19 C -0.181 4.181 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.165 4.165 23 N -0.290 5.290 24 C -0.110 4.110 25 C -0.092 4.092 26 C -0.171 4.171 27 C -0.124 4.124 28 C -0.162 4.162 29 C -0.034 4.034 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.205 0.795 34 H 0.200 0.800 35 H 0.254 0.746 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.148 0.852 46 H 0.168 0.832 47 H 0.168 0.832 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.343 -21.806 7.060 29.992 hybrid contribution -0.954 1.764 -0.894 2.195 sum 18.389 -20.043 6.167 27.891 Atomic orbital electron populations 1.70041 1.08438 1.28821 1.50245 1.25855 0.95661 1.03323 0.93131 0.85681 0.79697 0.77705 0.79745 1.18747 1.20213 1.16085 1.21314 0.90571 0.93516 1.53493 0.95707 1.19852 0.93652 0.77269 0.99504 1.44296 1.51977 1.13068 1.04523 1.22140 0.98792 0.91235 0.92319 1.18141 1.14115 0.93134 0.90752 1.17533 0.97224 0.89206 0.89850 1.26281 1.18940 1.03817 0.96254 1.84318 1.67779 1.06948 1.08736 1.24539 0.95408 0.91215 0.91756 1.44334 1.69905 1.06797 1.10915 1.22020 0.95720 0.90131 0.88292 1.22915 0.94550 0.98802 1.01873 1.22468 1.00292 0.93027 0.99963 1.22364 0.94128 0.99470 0.99934 1.22414 0.99069 0.91991 1.02984 1.66489 1.24816 1.02821 1.34913 1.19225 1.04984 0.93817 0.93007 1.20468 0.98585 0.97913 0.92206 1.20941 1.02812 0.97850 0.95466 1.21088 0.99072 0.92610 0.99598 1.20330 1.04921 1.01138 0.89793 1.18690 1.03420 0.91812 0.89519 0.91822 0.91759 0.93563 0.79455 0.79987 0.74623 0.89908 0.91549 0.91207 0.90379 0.90680 0.90045 0.91353 0.89422 0.90486 0.85193 0.83190 0.83215 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.25 13.96 21.45 0.30 -56.95 16 2 C 0.02 1.12 5.47 84.66 0.46 1.59 16 3 Si 0.95 41.02 27.47 68.60 1.88 42.90 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 7 C -0.55 -31.39 9.94 25.60 0.25 -31.14 16 8 H 0.02 1.65 8.06 -2.91 -0.02 1.62 16 9 C 0.22 10.14 4.81 85.63 0.41 10.55 16 10 N -0.46 -20.72 2.76 -518.95 -1.43 -22.15 16 11 C 0.09 3.46 10.82 83.26 0.90 4.36 16 12 C -0.15 -6.04 6.27 -18.90 -0.12 -6.16 16 13 C 0.19 6.64 6.68 40.74 0.27 6.91 16 14 C -0.31 -9.16 10.78 66.93 0.72 -8.44 16 15 S 0.08 1.76 22.10 -56.49 -1.25 0.51 16 16 C 0.34 8.76 8.44 179.32 1.51 10.27 16 17 N -0.68 -12.16 5.19 -322.60 -1.67 -13.84 16 18 C 0.14 1.78 3.24 45.72 0.15 1.93 16 19 C -0.14 -1.63 6.53 31.67 0.21 -1.42 16 20 C -0.12 -0.90 6.91 31.89 0.22 -0.68 16 21 C -0.12 -0.81 6.83 31.67 0.22 -0.60 16 22 C -0.13 -1.07 6.57 31.32 0.21 -0.86 16 23 N -0.56 -18.37 9.69 -186.78 -1.81 -20.18 16 24 C -0.11 -4.41 6.30 -20.09 -0.13 -4.53 16 25 C -0.07 -2.64 9.86 22.20 0.22 -2.43 16 26 C -0.15 -4.74 9.98 22.04 0.22 -4.52 16 27 C -0.10 -3.44 10.01 22.29 0.22 -3.22 16 28 C -0.14 -5.72 9.99 22.38 0.22 -5.50 16 29 C 0.07 3.20 6.80 39.00 0.27 3.46 16 30 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.06 2.74 7.17 -2.39 -0.02 2.72 16 32 H 0.05 2.07 7.57 -2.38 -0.02 2.05 16 33 H 0.19 6.21 7.63 -2.91 -0.02 6.19 16 34 H 0.18 4.69 7.60 -2.91 -0.02 4.67 16 35 H 0.41 6.79 8.44 -92.71 -0.78 6.00 16 36 H 0.08 1.09 7.28 -2.39 -0.02 1.07 16 37 H 0.07 0.92 8.05 -2.39 -0.02 0.90 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.08 0.66 7.62 -2.39 -0.02 0.64 16 45 H 0.13 4.41 7.37 -2.91 -0.02 4.39 16 46 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 47 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 48 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -72.64 406.26 2.60 -70.04 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.15 Total: 30.08 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 6.44 Total: -30.41 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -4.62 Total: -113.12 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.88 Total: 42.90 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.25 Total: 0.51 kcal Total: -72.64 2.60 -70.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007843300.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.134 kcal (2) G-P(sol) polarization free energy of solvation -72.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds