Wall clock time and date at job start Tue Mar 31 2020 05:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37983 * 120.06720 * 2 1 4 4 C 1.38344 * 120.14104 * 179.97438 * 3 2 1 5 5 C 1.38383 * 120.29259 * 0.04299 * 4 3 2 6 6 C 1.37940 * 120.14226 * 359.69802 * 5 4 3 7 7 C 1.39548 * 120.07719 * 179.97438 * 2 1 3 8 8 C 1.47849 * 120.14377 * 0.02562 * 7 2 1 9 9 O 1.21550 * 120.00017 * 353.77685 * 8 7 2 10 10 N 1.34776 * 120.00053 * 173.78662 * 8 7 2 11 11 N 1.40097 * 120.00029 * 179.97438 * 10 8 7 12 12 C 1.34778 * 120.00070 * 180.27459 * 11 10 8 13 13 O 1.21721 * 119.99853 * 359.71566 * 12 11 10 14 14 C 1.46251 * 120.00032 * 179.72493 * 12 11 10 15 15 C 1.35026 * 119.99889 * 179.97438 * 14 12 11 16 16 C 1.46967 * 119.99827 * 179.97438 * 15 14 12 17 17 C 1.40023 * 120.09977 * 359.71808 * 16 15 14 18 18 C 1.37596 * 119.89388 * 179.77082 * 17 16 15 19 19 C 1.39176 * 120.10353 * 0.50680 * 18 17 16 20 20 O 1.35567 * 119.90002 * 179.76313 * 19 18 17 21 21 C 1.34783 * 117.00050 * 185.61104 * 20 19 18 22 22 H 1.08001 * 119.99908 * 354.89975 * 21 20 19 23 23 C 1.38715 * 120.00149 * 174.90438 * 21 20 19 24 24 N 1.31510 * 120.00273 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00345 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46761 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47346 * 119.99213 * 25 23 21 28 28 H 1.48501 * 109.47479 * 239.99915 * 25 23 21 29 29 C 1.39183 * 120.20365 * 359.75000 * 19 18 17 30 30 C 1.37597 * 120.09806 * 359.97438 * 29 19 18 31 31 H 1.09002 * 109.47560 * 263.02630 * 1 2 3 32 32 H 1.08999 * 109.47765 * 23.03415 * 1 2 3 33 33 H 1.09004 * 109.47021 * 143.02977 * 1 2 3 34 34 H 1.07990 * 119.93152 * 359.97304 * 3 2 1 35 35 H 1.08000 * 119.85069 * 180.02562 * 4 3 2 36 36 H 1.08000 * 119.92888 * 179.97438 * 5 4 3 37 37 H 1.08009 * 120.07135 * 180.30521 * 6 5 4 38 38 H 0.97000 * 120.00263 * 359.97438 * 10 8 7 39 39 H 0.97000 * 120.00289 * 359.97438 * 11 10 8 40 40 H 1.07999 * 120.00183 * 359.97438 * 14 12 11 41 41 H 1.07999 * 120.00026 * 359.97438 * 15 14 12 42 42 H 1.07996 * 120.05488 * 0.02794 * 17 16 15 43 43 H 1.07996 * 119.94902 * 180.23896 * 18 17 16 44 44 H 0.96994 * 120.00289 * 180.02562 * 24 23 21 45 45 H 1.07992 * 119.95067 * 179.97438 * 29 19 18 46 46 H 1.07998 * 120.05297 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1942 0.0000 4 6 3.5817 1.1959 0.0005 5 6 4.2813 0.0020 0.0002 6 6 3.6022 -1.1987 0.0056 7 6 2.2063 -1.2076 0.0005 8 6 1.4720 -2.4908 0.0005 9 8 0.2619 -2.4986 0.1142 10 7 2.1445 -3.6521 -0.1253 11 7 1.4487 -4.8681 -0.1247 12 6 2.1217 -6.0296 -0.2450 13 8 3.3335 -6.0218 -0.3592 14 6 1.3959 -7.2993 -0.2384 15 6 2.0701 -8.4629 -0.3593 16 6 1.3409 -9.7389 -0.3521 17 6 -0.0525 -9.7505 -0.2140 18 6 -0.7315 -10.9473 -0.2125 19 6 -0.0345 -12.1455 -0.3375 20 8 -0.7072 -13.3225 -0.3307 21 6 0.0318 -14.4496 -0.3381 22 1 1.1061 -14.3904 -0.4320 23 6 -0.5875 -15.6857 -0.2252 24 7 -1.8956 -15.7579 -0.1104 25 14 0.4366 -17.2480 -0.2361 26 1 1.8728 -16.8974 -0.3761 27 1 0.2283 -17.9854 1.0359 28 1 0.0228 -18.1032 -1.3775 29 6 1.3511 -12.1390 -0.4697 30 6 2.0379 -10.9468 -0.4778 31 1 -0.3634 -0.1248 1.0200 32 1 -0.3634 0.9457 -0.4021 33 1 -0.3633 -0.8211 -0.6181 34 1 1.6583 2.1294 -0.0004 35 1 4.1181 2.1333 0.0010 36 1 5.3613 0.0102 0.0002 37 1 4.1494 -2.1299 0.0103 38 1 3.1102 -3.6459 -0.2162 39 1 0.4831 -4.8743 -0.0334 40 1 0.3208 -7.3062 -0.1367 41 1 3.1453 -8.4560 -0.4614 42 1 -0.5938 -8.8215 -0.1129 43 1 -1.8065 -10.9571 -0.1099 44 1 -2.3285 -16.6222 -0.0310 45 1 1.8878 -13.0712 -0.5659 46 1 3.1130 -10.9426 -0.5809 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007986130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:02 Heat of formation + Delta-G solvation = 4.697372 kcal Electronic energy + Delta-G solvation = -29396.860786 eV Core-core repulsion = 25025.981192 eV Total energy + Delta-G solvation = -4370.879594 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.99503 -39.75352 -39.21058 -38.50598 -36.96923 -35.66089 -33.36795 -33.10820 -32.62329 -32.30928 -30.65122 -30.45895 -28.23160 -27.35740 -25.74456 -24.47876 -23.45126 -22.29794 -22.02215 -21.67715 -20.94013 -19.50782 -18.48211 -18.11205 -17.81960 -17.08557 -16.87012 -16.16229 -15.85890 -15.79132 -15.29432 -14.93322 -14.84031 -14.74107 -14.49554 -14.34572 -14.03909 -13.87524 -13.71218 -13.59311 -13.53815 -13.09855 -12.64844 -12.53652 -12.48398 -12.23576 -12.01591 -11.86361 -11.78249 -11.59525 -11.50681 -11.17679 -11.15353 -10.72161 -10.56347 -10.30216 -10.05223 -9.70312 -9.54831 -9.54190 -9.23351 -8.93977 -8.54278 -8.42708 -7.17540 -6.69514 -4.23953 0.33219 0.83918 0.93206 1.59409 2.09982 2.29586 2.50929 3.00728 3.02228 3.08170 3.30786 3.43014 3.74509 3.78761 4.24573 4.26223 4.34870 4.45979 4.52322 4.80403 4.84891 4.88098 4.94398 4.99668 5.17063 5.19093 5.31596 5.40671 5.47178 5.47871 5.50974 5.61149 5.73399 5.85304 5.92299 5.96373 6.04689 6.07874 6.24044 6.35920 6.40698 6.45543 6.52994 6.61621 6.73576 6.87799 7.08108 7.18110 7.22871 7.34677 7.59001 7.62786 7.75868 8.20219 8.75187 9.41590 10.46947 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.032971 B = 0.001234 C = 0.001191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.034950 B =22689.909248 C =23511.182497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.017 4.017 3 C -0.132 4.132 4 C -0.086 4.086 5 C -0.133 4.133 6 C -0.081 4.081 7 C -0.134 4.134 8 C 0.558 3.442 9 O -0.531 6.531 10 N -0.517 5.517 11 N -0.525 5.525 12 C 0.561 3.439 13 O -0.560 6.560 14 C -0.282 4.282 15 C 0.053 3.947 16 C -0.204 4.204 17 C -0.040 4.040 18 C -0.199 4.199 19 C 0.168 3.832 20 O -0.160 6.160 21 C -0.393 4.393 22 H 0.099 0.901 23 C 0.042 3.958 24 N -0.850 5.850 25 Si 0.945 3.055 26 H -0.264 1.264 27 H -0.273 1.273 28 H -0.273 1.273 29 C -0.243 4.243 30 C -0.031 4.031 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.430 0.570 39 H 0.433 0.567 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.274 0.726 45 H 0.132 0.868 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.327 29.017 0.155 30.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.018 4.018 3 C -0.150 4.150 4 C -0.105 4.105 5 C -0.151 4.151 6 C -0.100 4.100 7 C -0.138 4.138 8 C 0.346 3.654 9 O -0.409 6.409 10 N -0.265 5.265 11 N -0.273 5.273 12 C 0.354 3.646 13 O -0.440 6.440 14 C -0.305 4.305 15 C 0.033 3.967 16 C -0.205 4.205 17 C -0.059 4.059 18 C -0.219 4.219 19 C 0.111 3.889 20 O -0.061 6.061 21 C -0.468 4.468 22 H 0.116 0.884 23 C -0.164 4.164 24 N -0.482 5.482 25 Si 0.769 3.231 26 H -0.188 1.188 27 H -0.199 1.199 28 H -0.199 1.199 29 C -0.262 4.262 30 C -0.050 4.050 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.273 0.727 39 H 0.275 0.725 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.855 28.712 0.178 30.047 hybrid contribution 0.619 -0.767 0.025 0.986 sum 9.475 27.945 0.203 29.508 Atomic orbital electron populations 1.21116 0.89746 1.03211 1.03903 1.20053 0.97047 0.91223 0.93501 1.21105 0.94307 0.97534 1.02032 1.21414 0.94292 0.98447 0.96314 1.21108 1.00447 0.92018 1.01566 1.21361 0.92775 0.98978 0.96867 1.19456 0.93463 0.91978 1.08901 1.18348 0.87361 0.82453 0.77247 1.90761 1.13269 1.86571 1.50260 1.44721 1.09701 0.97186 1.74848 1.44916 1.09536 0.96002 1.76875 1.18632 0.87426 0.82831 0.75726 1.90792 1.13960 1.87320 1.51878 1.22085 1.00330 0.89997 1.18077 1.22283 0.99191 0.90768 0.84429 1.18415 0.93324 0.91869 1.16928 1.20901 0.92959 0.96667 0.95330 1.20157 0.99903 0.90044 1.11751 1.19632 0.90735 0.87318 0.91186 1.83902 1.35223 1.11143 1.75823 1.21548 0.91868 0.81432 1.51979 0.88401 1.25410 0.96300 0.98854 0.95882 1.70019 1.08404 1.26471 1.43307 0.85576 0.79272 0.79717 0.78516 1.18818 1.19863 1.19878 1.21100 0.94206 0.98662 1.12250 1.20985 0.98529 0.91355 0.94117 0.90398 0.92186 0.88596 0.85108 0.85357 0.85135 0.85442 0.72736 0.72485 0.85278 0.85723 0.86266 0.86043 0.91564 0.85065 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 8.72 36.00 0.31 -0.68 16 2 C -0.02 -0.14 5.91 -104.23 -0.62 -0.76 16 3 C -0.13 -0.82 9.66 -39.64 -0.38 -1.20 16 4 C -0.09 -0.46 10.04 -39.49 -0.40 -0.85 16 5 C -0.13 -0.75 10.03 -39.64 -0.40 -1.15 16 6 C -0.08 -0.56 9.52 -39.19 -0.37 -0.93 16 7 C -0.13 -1.18 5.87 -104.97 -0.62 -1.80 16 8 C 0.56 5.96 7.82 -12.33 -0.10 5.86 16 9 O -0.53 -6.73 13.19 5.32 0.07 -6.66 16 10 N -0.52 -5.44 6.21 30.53 0.19 -5.25 16 11 N -0.52 -5.98 6.25 30.16 0.19 -5.79 16 12 C 0.56 7.45 7.85 -13.04 -0.10 7.35 16 13 O -0.56 -8.85 16.07 5.17 0.08 -8.76 16 14 C -0.28 -3.62 9.41 -37.51 -0.35 -3.97 16 15 C 0.05 0.76 9.45 -37.19 -0.35 0.40 16 16 C -0.20 -3.32 5.87 -105.02 -0.62 -3.94 16 17 C -0.04 -0.66 9.40 -39.15 -0.37 -1.03 16 18 C -0.20 -3.89 9.97 -39.47 -0.39 -4.28 16 19 C 0.17 3.78 6.66 -38.88 -0.26 3.52 16 20 O -0.16 -4.29 9.74 0.74 0.01 -4.28 16 21 C -0.39 -10.27 9.48 30.91 0.29 -9.98 16 22 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 23 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 24 N -0.85 -23.48 13.67 55.48 0.76 -22.73 16 25 Si 0.95 19.23 29.55 -169.99 -5.02 14.21 16 26 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 27 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 28 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 29 C -0.24 -4.89 9.14 -39.46 -0.36 -5.25 16 30 C -0.03 -0.54 9.78 -39.15 -0.38 -0.92 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.36 8.04 -51.93 -0.42 -0.06 16 33 H 0.10 0.95 5.88 -51.93 -0.31 0.64 16 34 H 0.13 0.54 8.05 -52.49 -0.42 0.12 16 35 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 36 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 37 H 0.13 0.69 6.46 -52.48 -0.34 0.35 16 38 H 0.43 4.04 6.08 -182.60 -1.11 2.93 16 39 H 0.43 4.41 7.98 -182.60 -1.46 2.95 16 40 H 0.13 1.42 6.07 -52.49 -0.32 1.10 16 41 H 0.12 1.72 7.52 -52.49 -0.39 1.32 16 42 H 0.12 1.59 6.16 -52.49 -0.32 1.26 16 43 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.13 2.62 5.62 -52.49 -0.29 2.32 16 46 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 397.82 15.07 6.00 6.00 Total: -1.00 -31.71 397.82 -10.19 -41.90 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.90 Total: 9.97 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -5.56 Total: -18.61 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 1.14 Total: -33.77 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.16 Total: -19.70 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.71 -10.19 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007986130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.595 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds