Wall clock time and date at job start Tue Mar 31 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35804 * 116.99958 * 2 1 4 4 C 1.38610 * 120.12408 * 359.97438 * 3 2 1 5 5 C 1.38158 * 120.06754 * 180.02562 * 4 3 2 6 6 C 1.38421 * 120.32054 * 0.02562 * 5 4 3 7 7 C 1.37956 * 120.25665 * 359.69825 * 6 5 4 8 8 C 1.39403 * 119.92316 * 0.57204 * 7 6 5 9 9 C 1.48172 * 120.15764 * 179.72571 * 8 7 6 10 10 C 1.39874 * 119.29767 * 359.70181 * 9 8 7 11 11 C 1.39038 * 119.26728 * 179.97438 * 10 9 8 12 12 C 1.47766 * 121.03148 * 180.02562 * 11 10 9 13 13 O 1.21459 * 120.00146 * 218.18498 * 12 11 10 14 14 O 1.34724 * 119.99741 * 38.17612 * 12 11 10 15 15 C 1.41486 * 117.93848 * 0.05295 * 11 10 9 16 16 C 1.41052 * 133.73401 * 179.97438 * 15 11 10 17 17 C 1.50702 * 125.69347 * 359.97438 * 16 15 11 18 18 N 1.30274 * 108.61217 * 179.97438 * 16 15 11 19 19 N 1.39988 * 109.74962 * 0.02562 * 18 16 15 20 20 C 1.46499 * 125.91944 * 179.97438 * 19 18 16 21 21 C 1.50699 * 109.47041 * 90.02183 * 20 19 18 22 22 H 1.07997 * 120.00010 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00255 * 179.97438 * 21 20 19 24 24 N 1.31518 * 119.99471 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00276 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46718 * 90.00330 * 25 23 21 27 27 H 1.48504 * 109.47225 * 210.00167 * 25 23 21 28 28 H 1.48503 * 109.47008 * 330.00314 * 25 23 21 29 29 C 1.37126 * 108.16572 * 359.97438 * 19 18 16 30 30 N 1.32290 * 119.29265 * 179.72625 * 9 8 7 31 31 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47183 * 299.99637 * 1 2 3 33 33 H 1.08994 * 109.47474 * 59.99980 * 1 2 3 34 34 H 1.08003 * 119.96384 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.83864 * 179.97438 * 5 4 3 36 36 H 1.08006 * 119.87553 * 179.97438 * 6 5 4 37 37 H 1.07993 * 120.04156 * 180.27880 * 7 6 5 38 38 H 1.08001 * 120.36304 * 359.97438 * 10 9 8 39 39 H 0.96700 * 116.99995 * 179.97438 * 14 12 11 40 40 H 1.08992 * 109.47236 * 275.99028 * 17 16 15 41 41 H 1.09004 * 109.47010 * 35.99131 * 17 16 15 42 42 H 1.08999 * 109.46842 * 155.99034 * 17 16 15 43 43 H 1.08999 * 109.47406 * 210.02421 * 20 19 18 44 44 H 1.09000 * 109.46837 * 330.02386 * 20 19 18 45 45 H 0.97001 * 119.99267 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2931 2.3741 -0.0005 5 6 1.9216 3.6045 -0.0011 6 6 3.3035 3.6833 -0.0016 7 6 4.0654 2.5332 0.0047 8 6 3.4422 1.2863 -0.0005 9 6 4.2554 0.0477 0.0001 10 6 5.6508 0.1450 -0.0005 11 6 6.4133 -1.0176 0.0005 12 6 7.8898 -0.9602 0.0005 13 8 8.5288 -1.7634 -0.6490 14 8 8.5273 -0.0169 0.7208 15 6 5.7316 -2.2574 0.0010 16 6 6.1549 -3.6030 0.0016 17 6 7.5863 -4.0744 0.0013 18 7 5.1019 -4.3701 0.0025 19 7 3.9438 -3.5837 0.0019 20 6 2.5663 -4.0825 0.0020 21 6 2.0937 -4.2522 1.4229 22 1 2.7532 -4.0121 2.2437 23 6 0.8189 -4.7130 1.6750 24 7 0.0156 -5.0048 0.6754 25 14 0.2327 -4.9227 3.4362 26 1 -0.3988 -3.6617 3.9011 27 1 -0.7593 -6.0259 3.4998 28 1 1.3905 -5.2472 4.3079 29 6 4.3220 -2.2656 0.0012 30 7 3.6463 -1.1266 0.0006 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 0.2145 2.3193 -0.0005 35 1 1.3317 4.5092 -0.0019 36 1 3.7873 4.6490 -0.0024 37 1 5.1433 2.5988 0.0088 38 1 6.1305 1.1126 -0.0018 39 1 9.4938 -0.0194 0.6899 40 1 7.9645 -4.0868 -1.0208 41 1 8.1917 -3.3980 0.6046 42 1 7.6378 -5.0795 0.4200 43 1 1.9218 -3.3699 -0.5126 44 1 2.5279 -5.0435 -0.5109 45 1 -0.8812 -5.3294 0.8528 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007987499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:59 Heat of formation + Delta-G solvation = -7.730489 kcal Electronic energy + Delta-G solvation = -33235.870209 eV Core-core repulsion = 28799.025791 eV Total energy + Delta-G solvation = -4436.844418 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.90010 -41.11837 -41.03096 -39.19452 -38.07528 -37.12868 -36.04073 -34.62053 -33.38127 -32.99345 -31.01167 -30.70613 -30.01363 -28.17504 -27.84843 -26.53874 -25.26323 -24.53219 -23.28865 -22.48427 -22.15070 -20.60663 -19.29692 -18.95654 -18.89592 -18.56547 -18.14594 -17.91188 -16.93957 -16.63762 -16.60810 -16.58479 -16.40499 -16.31429 -15.54915 -15.31254 -15.05891 -14.64541 -14.53590 -14.45782 -14.38384 -14.33261 -13.78065 -13.68687 -13.65759 -13.41529 -13.25836 -12.89874 -12.82033 -12.76458 -12.41684 -12.34469 -12.33789 -11.98103 -11.93297 -11.92490 -11.82831 -11.72343 -11.41201 -10.77037 -10.55637 -10.37796 -9.53541 -9.31229 -8.88023 -8.35485 -6.52297 -0.82878 -0.16841 0.53566 0.68140 1.12222 1.28971 1.32045 1.32739 1.44817 1.55286 1.88931 2.29160 2.50511 2.56888 2.92060 3.00779 3.04976 3.32130 3.45893 3.61488 3.78481 3.95193 4.02906 4.17738 4.24159 4.30153 4.35271 4.37315 4.50041 4.56646 4.61112 4.66173 4.71359 4.73939 4.76441 4.82684 4.85134 4.97159 5.07871 5.21777 5.40430 5.44304 5.45832 5.52120 5.58410 5.59883 5.76850 5.90947 5.94241 6.51324 6.51914 6.61359 6.95278 6.98763 7.16839 8.71578 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.006233 B = 0.005055 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4490.942369 B = 5538.109793 C = 9317.794529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.140 3.860 4 C -0.229 4.229 5 C -0.056 4.056 6 C -0.159 4.159 7 C -0.048 4.048 8 C -0.123 4.123 9 C 0.223 3.777 10 C -0.141 4.141 11 C -0.008 4.008 12 C 0.545 3.455 13 O -0.507 6.507 14 O -0.489 6.489 15 C -0.215 4.215 16 C 0.086 3.914 17 C -0.053 4.053 18 N -0.270 5.270 19 N -0.370 5.370 20 C 0.292 3.708 21 C -0.548 4.548 22 H 0.041 0.959 23 C 0.026 3.974 24 N -0.916 5.916 25 Si 0.970 3.030 26 H -0.267 1.267 27 H -0.267 1.267 28 H -0.275 1.275 29 C 0.294 3.706 30 N -0.476 5.476 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.197 0.803 39 H 0.440 0.560 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.027 0.973 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.507 22.052 -0.928 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.092 3.908 4 C -0.248 4.248 5 C -0.074 4.074 6 C -0.177 4.177 7 C -0.067 4.067 8 C -0.125 4.125 9 C 0.072 3.928 10 C -0.162 4.162 11 C -0.019 4.019 12 C 0.388 3.612 13 O -0.396 6.396 14 O -0.304 6.304 15 C -0.226 4.226 16 C -0.088 4.088 17 C -0.111 4.111 18 N -0.088 5.088 19 N -0.158 5.158 20 C 0.174 3.826 21 C -0.586 4.586 22 H 0.059 0.941 23 C -0.175 4.175 24 N -0.554 5.554 25 Si 0.793 3.207 26 H -0.192 1.192 27 H -0.191 1.191 28 H -0.200 1.200 29 C 0.052 3.948 30 N -0.191 5.191 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.185 0.815 37 H 0.184 0.816 38 H 0.214 0.786 39 H 0.303 0.697 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.647 20.033 -1.151 22.265 hybrid contribution 0.224 -0.239 0.591 0.676 sum 9.872 19.794 -0.560 22.126 Atomic orbital electron populations 1.23148 0.78309 1.03621 1.02057 1.86549 1.21576 1.26704 1.86728 1.19672 0.92254 0.85451 0.93390 1.21491 1.00975 0.92061 1.10281 1.21519 0.95584 0.97014 0.93324 1.21396 0.93580 0.99184 1.03570 1.21436 1.01770 0.88934 0.94529 1.18159 0.89539 0.91784 1.13024 1.19990 0.90917 0.89522 0.92368 1.22356 0.92526 0.99529 1.01838 1.18760 0.91025 0.91528 1.00624 1.20089 0.87176 0.77887 0.76093 1.90913 1.67883 1.39625 1.41154 1.84554 1.29844 1.51328 1.64671 1.19344 0.93342 0.94762 1.15164 1.22864 0.97273 0.89499 0.99126 1.20369 0.84475 1.01827 1.04462 1.76768 0.91239 1.20534 1.20233 1.49165 1.06691 1.00522 1.59379 1.19085 0.71424 0.94309 0.97831 1.21314 0.99546 1.46451 0.91281 0.94079 1.25694 0.95673 0.93824 1.02317 1.70019 1.08422 1.44098 1.32885 0.85392 0.78131 0.78599 0.78560 1.19248 1.19128 1.20044 1.19219 0.89590 0.87313 0.98643 1.66551 1.40958 0.96167 1.15388 0.90348 0.91463 0.90877 0.84063 0.82304 0.81528 0.81636 0.78569 0.69705 0.88878 0.89342 0.90212 0.94796 0.95531 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.81 113.37 1.11 1.86 16 2 O -0.30 -12.04 8.30 -91.35 -0.76 -12.80 16 3 C 0.14 4.45 6.69 22.75 0.15 4.60 16 4 C -0.23 -5.23 9.03 22.34 0.20 -5.03 16 5 C -0.06 -0.88 10.03 22.29 0.22 -0.66 16 6 C -0.16 -2.21 10.03 22.25 0.22 -1.99 16 7 C -0.05 -0.87 9.41 22.48 0.21 -0.66 16 8 C -0.12 -3.60 5.89 -19.96 -0.12 -3.72 16 9 C 0.22 7.86 6.73 42.11 0.28 8.14 16 10 C -0.14 -3.86 9.10 22.86 0.21 -3.65 16 11 C -0.01 -0.24 5.86 -19.77 -0.12 -0.35 16 12 C 0.55 12.84 7.34 70.34 0.52 13.36 16 13 O -0.51 -13.56 13.98 19.97 0.28 -13.28 16 14 O -0.49 -6.73 13.31 -56.34 -0.75 -7.48 16 15 C -0.21 -8.87 5.98 -21.12 -0.13 -8.99 16 16 C 0.09 3.56 7.21 43.48 0.31 3.88 16 17 C -0.05 -1.62 8.58 71.24 0.61 -1.01 16 18 N -0.27 -13.45 12.44 -46.91 -0.58 -14.04 16 19 N -0.37 -20.09 3.65 -348.76 -1.27 -21.36 16 20 C 0.29 17.36 6.20 85.63 0.53 17.89 16 21 C -0.55 -33.60 9.39 25.60 0.24 -33.36 16 22 H 0.04 2.62 7.81 -2.91 -0.02 2.59 16 23 C 0.03 1.50 5.46 84.65 0.46 1.96 16 24 N -0.92 -54.49 13.29 21.45 0.28 -54.20 16 25 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 28 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 29 C 0.29 14.41 8.00 134.13 1.07 15.48 16 30 N -0.48 -21.96 8.09 -182.12 -1.47 -23.43 16 31 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 32 H 0.07 1.79 7.66 -2.39 -0.02 1.78 16 33 H 0.07 1.84 7.66 -2.39 -0.02 1.83 16 34 H 0.14 2.76 6.30 -2.91 -0.02 2.74 16 35 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 37 H 0.17 1.80 6.14 -2.91 -0.02 1.78 16 38 H 0.20 3.18 6.14 -2.91 -0.02 3.16 16 39 H 0.44 1.30 9.11 -74.06 -0.67 0.63 16 40 H 0.09 2.68 7.76 -2.39 -0.02 2.66 16 41 H 0.09 2.40 6.11 -2.38 -0.01 2.38 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.03 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -85.07 386.34 4.16 -80.91 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.40 Total: 10.29 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.00 Total: 7.73 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.05 Total: -113.03 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -1.23 Total: -33.55 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -85.07 4.16 -80.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007987499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.175 kcal (2) G-P(sol) polarization free energy of solvation -85.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds