Wall clock time and date at job start Tue Mar 31 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00115 * 2 1 4 4 N 1.46899 * 109.47187 * 125.00217 * 3 2 1 5 5 C 1.46901 * 111.00112 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47042 * 179.97438 * 5 4 3 7 7 N 1.29980 * 119.11168 * 359.97438 * 6 5 4 8 8 C 1.35056 * 121.74373 * 179.97438 * 7 6 5 9 9 S 1.75861 * 130.57081 * 180.02562 * 8 7 6 10 10 C 1.75299 * 92.34697 * 180.02562 * 9 8 7 11 11 C 1.33396 * 111.16542 * 359.73655 * 10 9 8 12 12 C 1.48214 * 122.81212 * 180.27435 * 11 10 9 13 13 C 1.39440 * 120.13091 * 129.92357 * 12 11 10 14 14 C 1.37986 * 119.86662 * 179.74474 * 13 12 11 15 15 C 1.38340 * 120.13185 * 0.55748 * 14 13 12 16 16 C 1.38345 * 120.25935 * 359.69083 * 15 14 13 17 17 C 1.37989 * 120.13135 * 0.03079 * 16 15 14 18 18 C 1.39030 * 119.53358 * 0.04280 * 8 7 6 19 19 C 1.42780 * 117.90447 * 359.97438 * 18 8 7 20 20 O 1.21874 * 120.62495 * 180.02562 * 19 18 8 21 21 N 1.34743 * 118.76032 * 359.97438 * 19 18 8 22 22 C 1.37169 * 119.85892 * 179.97438 * 21 19 18 23 23 H 1.07997 * 119.99841 * 138.61944 * 22 21 19 24 24 C 1.39028 * 119.99946 * 318.62085 * 22 21 19 25 25 N 1.31279 * 119.99944 * 340.37870 * 24 22 21 26 26 Si 1.86799 * 119.99822 * 160.37959 * 24 22 21 27 27 H 1.48507 * 109.47228 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47310 * 119.99725 * 26 24 22 29 29 H 1.48507 * 109.47004 * 239.99913 * 26 24 22 30 30 H 1.07996 * 119.99855 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.00199 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.00239 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.46616 * 5.00300 * 3 2 1 34 34 H 1.08998 * 109.47419 * 245.00166 * 3 2 1 35 35 H 1.00898 * 110.99910 * 56.04387 * 4 3 2 36 36 H 1.09004 * 109.46834 * 60.00021 * 5 4 3 37 37 H 1.08991 * 109.47217 * 299.99884 * 5 4 3 38 38 H 1.08002 * 124.41673 * 180.02562 * 10 9 8 39 39 H 1.08002 * 120.06210 * 359.97438 * 13 12 11 40 40 H 1.08004 * 119.93597 * 180.27312 * 14 13 12 41 41 H 1.07995 * 119.87140 * 179.71963 * 15 14 13 42 42 H 1.08003 * 119.93265 * 180.02562 * 16 15 14 43 43 H 1.08009 * 120.06396 * 180.02562 * 17 16 15 44 44 H 0.96999 * 119.99767 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 3.7497 2.5927 1.1669 6 6 4.6936 2.5837 2.3417 7 7 4.7231 1.5441 3.1213 8 6 5.5484 1.4793 4.1884 9 16 5.7785 0.2074 5.3809 10 6 7.0003 1.1298 6.2349 11 6 7.2127 2.3082 5.6468 12 6 8.1991 3.2920 6.1527 13 6 9.1333 3.8562 5.2848 14 6 10.0457 4.7756 5.7605 15 6 10.0423 5.1292 7.0979 16 6 9.1212 4.5689 7.9648 17 6 8.2002 3.6527 7.4995 18 6 6.3917 2.5486 4.4685 19 6 6.3446 3.6817 3.6010 20 8 7.0626 4.6462 3.8001 21 7 5.4924 3.6644 2.5575 22 6 5.4284 4.7412 1.7101 23 1 5.3492 4.5856 0.6443 24 6 5.4654 6.0327 2.2233 25 7 5.1763 6.2459 3.4860 26 14 5.9264 7.4648 1.1160 27 1 6.2056 6.9620 -0.2532 28 1 4.8032 8.4350 1.0679 29 1 7.1375 8.1358 1.6529 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4027 -0.9314 35 1 3.6193 0.5386 1.1092 36 1 3.0561 3.4279 1.2649 37 1 4.3191 2.6996 0.2438 38 1 7.5172 0.7868 7.1189 39 1 9.1402 3.5769 4.2415 40 1 10.7669 5.2166 5.0883 41 1 10.7612 5.8458 7.4666 42 1 9.1230 4.8491 9.0079 43 1 7.4813 3.2163 8.1772 44 1 5.2018 7.1471 3.8439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008133374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:36 Heat of formation + Delta-G solvation = 83.314816 kcal Electronic energy + Delta-G solvation = -30231.216975 eV Core-core repulsion = 26241.073449 eV Total energy + Delta-G solvation = -3990.143526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.58182 -38.71412 -36.94031 -36.23823 -35.66258 -33.65424 -32.94004 -31.92134 -30.45144 -30.20209 -28.59974 -26.62041 -25.95421 -23.89353 -23.59911 -22.27730 -21.99232 -21.20239 -19.89932 -19.48821 -18.14311 -18.03294 -16.58042 -16.10350 -15.87325 -15.60157 -15.34570 -15.01788 -14.73721 -14.42747 -14.27655 -14.23541 -14.07482 -13.50029 -13.14539 -12.93310 -12.76033 -12.70423 -12.45083 -12.28634 -12.15875 -12.08531 -11.81505 -11.66423 -11.35807 -11.25994 -11.13747 -10.96630 -10.81574 -10.60060 -10.52010 -10.30640 -9.64778 -9.48722 -9.05539 -8.91224 -8.53176 -8.44311 -8.10157 -8.08470 -7.54386 -7.06970 -6.78097 -4.64452 1.20495 1.68742 1.92038 1.97196 2.29027 2.58409 2.77777 2.98570 3.04701 3.08251 3.11225 3.71810 4.10333 4.30519 4.53133 4.72596 4.88359 4.98941 5.06918 5.21903 5.28088 5.32210 5.39615 5.48013 5.49921 5.57589 5.74193 5.75218 5.84455 5.90275 5.92742 6.00631 6.06822 6.14585 6.37415 6.43592 6.56735 6.61547 6.71944 6.76498 6.79303 6.91871 6.94109 7.00383 7.17630 7.19635 7.45871 7.51104 7.68841 7.97498 8.37752 8.56804 9.01335 9.54675 10.18896 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.008603 B = 0.003987 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.815709 B = 7021.424842 C = 9877.871750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.142 4.142 3 C 0.082 3.918 4 N -0.667 5.667 5 C 0.136 3.864 6 C 0.338 3.662 7 N -0.520 5.520 8 C 0.098 3.902 9 S 0.116 5.884 10 C -0.251 4.251 11 C 0.019 3.981 12 C -0.019 4.019 13 C -0.054 4.054 14 C -0.125 4.125 15 C -0.124 4.124 16 C -0.132 4.132 17 C -0.107 4.107 18 C -0.262 4.262 19 C 0.529 3.471 20 O -0.505 6.505 21 N -0.326 5.326 22 C -0.372 4.372 23 H 0.112 0.888 24 C 0.081 3.919 25 N -0.778 5.778 26 Si 0.929 3.071 27 H -0.262 1.262 28 H -0.276 1.276 29 H -0.271 1.271 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.350 0.650 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.161 0.839 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 -6.891 -0.912 6.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.160 4.160 3 C -0.046 4.046 4 N -0.299 5.299 5 C 0.005 3.995 6 C 0.074 3.926 7 N -0.249 5.249 8 C -0.142 4.142 9 S 0.376 5.624 10 C -0.385 4.385 11 C 0.006 3.994 12 C -0.021 4.021 13 C -0.073 4.073 14 C -0.144 4.144 15 C -0.142 4.142 16 C -0.150 4.150 17 C -0.126 4.126 18 C -0.279 4.279 19 C 0.326 3.674 20 O -0.380 6.380 21 N -0.026 5.026 22 C -0.500 4.500 23 H 0.129 0.871 24 C -0.139 4.139 25 N -0.404 5.404 26 Si 0.753 3.247 27 H -0.186 1.186 28 H -0.201 1.201 29 H -0.197 1.197 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.169 0.831 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.179 0.821 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.872 -7.928 0.027 7.975 hybrid contribution 1.791 2.656 -1.029 3.365 sum 0.919 -5.272 -1.002 5.444 Atomic orbital electron populations 1.23761 0.95856 1.01652 1.01479 1.22832 0.96019 0.98096 0.99056 1.21109 0.95601 0.96023 0.91906 1.60206 1.22517 1.04261 1.42961 1.20511 0.93460 0.93594 0.91945 1.22643 0.89136 0.85338 0.95456 1.67478 1.24982 1.25829 1.06610 1.23379 0.96665 0.96497 0.97697 1.83436 1.39406 1.18214 1.21369 1.24834 1.07327 0.99339 1.07004 1.17988 0.95029 0.93160 0.93202 1.18404 0.94343 0.96409 0.92980 1.21098 0.92809 0.94465 0.98887 1.20978 0.99649 0.98309 0.95420 1.21055 0.99208 1.00120 0.93851 1.20888 0.96519 0.98328 0.99282 1.21112 0.98702 0.98244 0.94494 1.20546 1.06817 0.98215 1.02305 1.16438 0.81680 0.87153 0.82152 1.90743 1.41603 1.34699 1.70953 1.42395 1.24642 1.13641 1.21885 1.19763 1.56383 0.83511 0.90365 0.87066 1.25429 0.92942 0.99430 0.96082 1.69829 1.32506 1.24049 1.14011 0.85874 0.78915 0.79956 0.79994 1.18603 1.20119 1.19654 0.88603 0.88677 0.87502 0.90530 0.94614 0.83064 0.87821 0.92954 0.82126 0.86266 0.86594 0.86815 0.86594 0.86429 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 14.32 29.01 0.42 -1.51 16 2 C -0.14 -1.57 9.78 -36.03 -0.35 -1.92 16 3 C 0.08 1.00 6.13 -4.98 -0.03 0.97 16 4 N -0.67 -10.17 6.04 -116.34 -0.70 -10.87 16 5 C 0.14 2.34 4.86 -4.97 -0.02 2.32 16 6 C 0.34 7.34 7.51 -154.86 -1.16 6.18 16 7 N -0.52 -11.26 9.24 -8.74 -0.08 -11.34 16 8 C 0.10 2.16 7.68 -15.84 -0.12 2.04 16 9 S 0.12 2.05 23.22 -107.50 -2.50 -0.45 16 10 C -0.25 -4.42 10.65 29.04 0.31 -4.12 16 11 C 0.02 0.39 5.50 -104.55 -0.58 -0.18 16 12 C -0.02 -0.38 5.23 -104.91 -0.55 -0.93 16 13 C -0.05 -1.10 7.63 -39.23 -0.30 -1.40 16 14 C -0.13 -2.21 10.03 -39.64 -0.40 -2.61 16 15 C -0.12 -1.96 10.04 -39.50 -0.40 -2.35 16 16 C -0.13 -2.08 10.03 -39.63 -0.40 -2.48 16 17 C -0.11 -1.89 9.59 -39.23 -0.38 -2.26 16 18 C -0.26 -6.24 5.99 -104.91 -0.63 -6.86 16 19 C 0.53 13.90 6.76 -14.52 -0.10 13.81 16 20 O -0.50 -14.18 11.37 5.03 0.06 -14.12 16 21 N -0.33 -8.04 2.66 -61.03 -0.16 -8.20 16 22 C -0.37 -9.01 8.28 -14.87 -0.12 -9.13 16 23 H 0.11 2.42 7.16 -52.49 -0.38 2.04 16 24 C 0.08 2.01 4.34 -17.50 -0.08 1.93 16 25 N -0.78 -21.04 11.57 55.50 0.64 -20.40 16 26 Si 0.93 19.04 29.59 -169.99 -5.03 14.00 16 27 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 28 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 29 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 30 H 0.10 0.93 7.84 -52.49 -0.41 0.52 16 31 H 0.09 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.08 0.93 7.79 -51.93 -0.40 0.52 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.35 5.26 8.33 -39.29 -0.33 4.93 16 36 H 0.10 1.83 8.08 -51.93 -0.42 1.42 16 37 H 0.05 0.83 7.65 -51.93 -0.40 0.43 16 38 H 0.16 2.32 8.06 -52.49 -0.42 1.90 16 39 H 0.12 2.58 7.41 -52.49 -0.39 2.19 16 40 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 43 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 44 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -30.37 386.47 -12.08 -42.44 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.24 Total: 11.61 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -4.88 Total: -8.50 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.30 Total: -50.81 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.06 Total: -14.12 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.50 Total: -0.45 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.37 -12.08 -42.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008133374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.756 kcal (2) G-P(sol) polarization free energy of solvation -30.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds