Wall clock time and date at job start Tue Mar 31 2020 05:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47654 * 2 1 4 4 C 1.52999 * 109.47330 * 120.00603 * 2 1 3 5 5 C 1.52999 * 109.47268 * 184.99796 * 4 2 1 6 6 C 1.50700 * 109.47249 * 179.97438 * 5 4 2 7 7 C 1.38232 * 120.00210 * 269.72607 * 6 5 4 8 8 C 1.38237 * 120.00052 * 179.76759 * 7 6 5 9 9 C 1.38232 * 120.00122 * 0.50227 * 8 7 6 10 10 C 1.38236 * 119.99862 * 359.75336 * 9 8 7 11 11 C 1.38235 * 119.99832 * 89.99930 * 6 5 4 12 12 N 1.46506 * 109.46993 * 240.00076 * 2 1 3 13 13 C 1.34774 * 119.99698 * 85.00093 * 12 2 1 14 14 O 1.21581 * 120.00215 * 0.02562 * 13 12 2 15 15 C 1.47596 * 119.99939 * 180.02562 * 13 12 2 16 16 C 1.39780 * 120.06237 * 359.71504 * 15 13 12 17 17 C 1.37631 * 119.93777 * 179.78924 * 16 15 13 18 18 C 1.39261 * 120.06305 * 0.47441 * 17 16 15 19 19 N 1.39098 * 119.94105 * 179.76084 * 18 17 16 20 20 C 1.34770 * 120.00358 * 213.42088 * 19 18 17 21 21 O 1.21724 * 119.99957 * 5.12305 * 20 19 18 22 22 C 1.46197 * 120.00334 * 185.12891 * 20 19 18 23 23 H 1.07998 * 119.99749 * 6.08148 * 22 20 19 24 24 C 1.40121 * 120.00233 * 186.08415 * 22 20 19 25 25 N 1.30637 * 119.99905 * 353.81419 * 24 22 20 26 26 Si 1.86800 * 120.00053 * 173.81327 * 24 22 20 27 27 H 1.48502 * 109.47035 * 94.98588 * 26 24 22 28 28 H 1.48497 * 109.47067 * 214.98228 * 26 24 22 29 29 H 1.48499 * 109.47166 * 334.98251 * 26 24 22 30 30 C 1.39257 * 120.12095 * 359.78331 * 18 17 16 31 31 C 1.37631 * 120.06521 * 359.97438 * 30 18 17 32 32 H 1.08994 * 109.47208 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46772 * 299.99769 * 1 2 3 34 34 H 1.08996 * 109.47242 * 59.98938 * 1 2 3 35 35 H 1.08996 * 109.47195 * 64.99647 * 4 2 1 36 36 H 1.09000 * 109.47329 * 304.99512 * 4 2 1 37 37 H 1.08996 * 109.47427 * 59.99351 * 5 4 2 38 38 H 1.09000 * 109.47125 * 299.99747 * 5 4 2 39 39 H 1.07998 * 119.99986 * 359.97438 * 7 6 5 40 40 H 1.08009 * 119.99867 * 180.23136 * 8 7 6 41 41 H 1.07995 * 120.00075 * 179.72356 * 9 8 7 42 42 H 1.07999 * 119.99882 * 179.97438 * 10 9 8 43 43 H 1.07998 * 120.00496 * 359.97438 * 11 6 5 44 44 H 0.96999 * 120.00268 * 265.00453 * 12 2 1 45 45 H 1.07996 * 120.02681 * 0.03658 * 16 15 13 46 46 H 1.07994 * 119.96804 * 180.21105 * 17 16 15 47 47 H 0.97001 * 119.99411 * 33.41734 * 19 18 17 48 48 H 0.96996 * 119.99998 * 180.02562 * 25 24 22 49 49 H 1.08000 * 119.96832 * 179.97438 * 30 18 17 50 50 H 1.08000 * 120.03123 * 179.97438 * 31 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6134 1.3136 6 6 4.0672 -1.3234 2.5443 7 6 4.2046 -0.6321 3.7334 8 6 4.6608 -1.2846 4.8635 9 6 4.9895 -2.6258 4.8019 10 6 4.8571 -3.3159 3.6115 11 6 4.3959 -2.6647 2.4826 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8583 1.1616 -2.4116 15 6 2.6384 -0.7141 -3.5624 16 6 2.9763 -2.0690 -3.4999 17 6 3.4302 -2.7164 -4.6265 18 6 3.5623 -2.0205 -5.8255 19 7 4.0259 -2.6761 -6.9613 20 6 4.7739 -2.0121 -7.8646 21 8 5.1221 -0.8670 -7.6426 22 6 5.1670 -2.6669 -9.1111 23 1 4.7782 -3.6449 -9.3532 24 6 6.0483 -2.0257 -9.9918 25 7 6.4238 -0.7961 -9.7600 26 14 6.6863 -2.9290 -11.4972 27 1 5.8363 -2.5995 -12.6694 28 1 8.0858 -2.5128 -11.7680 29 1 6.6441 -4.3929 -11.2510 30 6 3.2314 -0.6693 -5.8894 31 6 2.7724 -0.0180 -4.7672 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3633 0.5140 -0.8898 35 1 1.7516 -1.7716 1.2054 36 1 1.6055 -0.2619 2.1370 37 1 3.8533 0.4368 1.3572 38 1 3.9994 -1.0729 0.4258 39 1 3.9524 0.4170 3.7803 40 1 4.7647 -0.7452 5.7935 41 1 5.3501 -3.1344 5.6837 42 1 5.1142 -4.3638 3.5633 43 1 4.2923 -3.2040 1.5526 44 1 2.2489 -1.6318 -1.1528 45 1 2.8776 -2.6082 -2.5694 46 1 3.6882 -3.7640 -4.5795 47 1 3.8109 -3.6113 -7.1031 48 1 7.0336 -0.3521 -10.3697 49 1 3.3352 -0.1319 -6.8204 50 1 2.5163 1.0300 -4.8172 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008727266.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:34 Heat of formation + Delta-G solvation = -41.377325 kcal Electronic energy + Delta-G solvation = -30833.739793 eV Core-core repulsion = 26596.695344 eV Total energy + Delta-G solvation = -4237.044448 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.17261 -39.58649 -38.89955 -37.00642 -36.35206 -33.71416 -33.50169 -32.56944 -31.50655 -31.19290 -30.36092 -29.14098 -28.69250 -26.45897 -24.60328 -23.38517 -22.88278 -22.41949 -21.36517 -20.98391 -20.63739 -19.72723 -17.84584 -17.52161 -17.08206 -16.52103 -16.22781 -15.60440 -15.53775 -15.44156 -14.87663 -14.66091 -14.49814 -14.22817 -13.92278 -13.79043 -13.73465 -13.58056 -13.36621 -13.15365 -13.04667 -12.78424 -12.70739 -12.65148 -12.26354 -11.96611 -11.87678 -11.79003 -11.61154 -11.38365 -11.32870 -11.14584 -11.09601 -10.91758 -10.78968 -10.64986 -10.40712 -9.71251 -9.46030 -9.23228 -9.16479 -8.97904 -8.92418 -8.59286 -7.86878 -7.24364 -6.44224 -4.90942 1.04411 1.08943 1.33519 1.87296 3.01372 3.09876 3.13557 3.20090 3.21327 3.46492 3.91968 4.19538 4.26808 4.46458 4.48175 4.50458 4.66104 4.74846 4.77411 4.80705 4.86932 5.04716 5.12913 5.17993 5.21825 5.27573 5.31554 5.35392 5.37431 5.51212 5.52451 5.57685 5.69593 5.75204 5.81395 5.84194 5.90584 5.99139 6.05695 6.13555 6.15906 6.20762 6.33621 6.41498 6.49651 6.58783 6.70114 6.87609 6.93930 7.19464 7.25237 7.58807 7.61372 7.91127 8.04872 8.39245 8.76233 9.06997 10.26644 10.46624 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.012705 B = 0.001675 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.293249 B =16712.816668 C =18119.775985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.119 4.119 5 C -0.084 4.084 6 C -0.078 4.078 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.128 4.128 10 C -0.118 4.118 11 C -0.117 4.117 12 N -0.729 5.729 13 C 0.570 3.430 14 O -0.547 6.547 15 C -0.196 4.196 16 C -0.061 4.061 17 C -0.189 4.189 18 C 0.226 3.774 19 N -0.695 5.695 20 C 0.539 3.461 21 O -0.555 6.555 22 C -0.538 4.538 23 H 0.074 0.926 24 C 0.086 3.914 25 N -0.756 5.756 26 Si 0.913 3.087 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.263 1.263 30 C -0.143 4.143 31 C -0.034 4.034 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.397 0.603 45 H 0.116 0.884 46 H 0.123 0.877 47 H 0.396 0.604 48 H 0.273 0.727 49 H 0.145 0.855 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 -5.404 25.190 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.156 4.156 5 C -0.122 4.122 6 C -0.078 4.078 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.146 4.146 10 C -0.136 4.136 11 C -0.135 4.135 12 N -0.382 5.382 13 C 0.360 3.640 14 O -0.426 6.426 15 C -0.201 4.201 16 C -0.080 4.080 17 C -0.211 4.211 18 C 0.125 3.875 19 N -0.337 5.337 20 C 0.346 3.654 21 O -0.437 6.437 22 C -0.573 4.573 23 H 0.092 0.908 24 C -0.136 4.136 25 N -0.383 5.383 26 Si 0.737 3.263 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.187 1.187 30 C -0.164 4.164 31 C -0.054 4.054 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.232 0.768 45 H 0.133 0.867 46 H 0.141 0.859 47 H 0.229 0.771 48 H 0.084 0.916 49 H 0.162 0.838 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.141 -3.571 25.125 26.363 hybrid contribution 0.465 -1.521 -0.683 1.731 sum -6.675 -5.091 24.442 25.844 Atomic orbital electron populations 1.22176 0.95321 1.02091 1.02580 1.20942 0.93951 0.97680 0.83688 0.89314 1.21878 0.94856 1.01404 0.97507 1.20660 0.95399 1.00820 0.95297 1.19941 0.98474 0.94113 0.95274 1.21082 1.00115 0.99920 0.92544 1.21153 0.99346 0.94867 0.98374 1.21148 1.00727 0.94761 0.97974 1.21171 0.99479 0.99943 0.93026 1.21101 0.99527 0.94244 0.98652 1.46001 1.68638 1.13955 1.09595 1.18328 0.76506 0.86269 0.82923 1.90733 1.50873 1.15858 1.85133 1.19545 1.11624 0.94621 0.94294 1.20794 0.96855 0.93038 0.97331 1.20776 1.08110 1.00606 0.91623 1.18219 0.89428 0.92659 0.87235 1.44259 1.53789 1.14569 1.21092 1.18453 0.77395 0.86235 0.83317 1.90657 1.56939 1.18113 1.77969 1.20861 1.29419 1.04771 1.02268 0.90822 1.25755 0.94836 0.94342 0.98642 1.69979 1.24332 1.10257 1.33764 0.86255 0.78545 0.80416 0.81056 1.19579 1.20176 1.18676 1.21345 1.00436 0.94449 1.00144 1.21061 0.94006 0.99583 0.90728 0.92527 0.91848 0.91806 0.91186 0.90270 0.90684 0.90483 0.86114 0.86214 0.86294 0.86126 0.86008 0.76754 0.86653 0.85946 0.77051 0.91566 0.83761 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.14 1.31 2.57 -67.93 -0.17 1.13 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 4 C -0.12 -0.81 4.74 -26.73 -0.13 -0.94 16 5 C -0.08 -0.65 5.23 -27.88 -0.15 -0.80 16 6 C -0.08 -0.63 5.13 -104.63 -0.54 -1.17 16 7 C -0.12 -0.92 9.70 -39.58 -0.38 -1.31 16 8 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 9 C -0.13 -0.93 10.05 -39.58 -0.40 -1.32 16 10 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 11 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 12 N -0.73 -7.74 4.48 -54.83 -0.25 -7.99 16 13 C 0.57 8.57 7.73 -12.44 -0.10 8.47 16 14 O -0.55 -10.04 16.00 5.29 0.08 -9.96 16 15 C -0.20 -3.14 5.88 -104.93 -0.62 -3.76 16 16 C -0.06 -0.84 9.53 -39.23 -0.37 -1.21 16 17 C -0.19 -2.96 9.94 -39.42 -0.39 -3.35 16 18 C 0.23 4.46 6.27 -83.80 -0.53 3.93 16 19 N -0.70 -14.73 5.30 -11.19 -0.06 -14.79 16 20 C 0.54 14.37 7.46 -13.07 -0.10 14.27 16 21 O -0.56 -16.82 12.70 5.17 0.07 -16.76 16 22 C -0.54 -14.16 9.53 -35.68 -0.34 -14.50 16 23 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 24 C 0.09 2.26 5.50 -17.35 -0.10 2.16 16 25 N -0.76 -21.45 11.85 55.55 0.66 -20.79 16 26 Si 0.91 18.96 29.56 -169.99 -5.03 13.93 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 28 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 29 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 30 C -0.14 -2.97 8.62 -39.42 -0.34 -3.31 16 31 C -0.03 -0.63 9.58 -39.23 -0.38 -1.00 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.08 0.64 7.70 -51.93 -0.40 0.24 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.40 3.31 6.62 -40.82 -0.27 3.04 16 45 H 0.12 1.12 6.39 -52.49 -0.34 0.78 16 46 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 47 H 0.40 7.02 8.79 -40.82 -0.36 6.66 16 48 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 49 H 0.14 3.43 6.39 -52.49 -0.34 3.10 16 50 H 0.13 2.34 7.64 -52.49 -0.40 1.94 16 LS Contribution 422.35 15.07 6.36 6.36 Total: -1.00 -34.15 422.35 -11.11 -45.27 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.11 Total: 12.37 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -5.85 Total: -7.65 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.35 Total: -43.57 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: 0.15 Total: -26.72 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.15 -11.11 -45.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008727266.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.891 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds