Wall clock time and date at job start Tue Mar 31 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38538 * 126.38413 * 2 1 4 4 C 1.38647 * 133.88117 * 0.05500 * 3 2 1 5 5 C 1.37977 * 119.85514 * 179.97438 * 4 3 2 6 6 C 1.38700 * 120.43123 * 0.02562 * 5 4 3 7 7 C 1.37688 * 120.49472 * 359.97438 * 6 5 4 8 8 C 1.39716 * 119.78174 * 0.02562 * 7 6 5 9 9 N 1.35877 * 133.37940 * 180.35069 * 8 7 6 10 10 C 1.31058 * 109.62274 * 180.11907 * 9 8 7 11 11 S 1.76201 * 125.07908 * 179.82617 * 10 9 8 12 12 C 1.80994 * 99.99894 * 4.72629 * 11 10 9 13 13 C 1.50699 * 109.47113 * 184.96280 * 12 11 10 14 14 O 1.21281 * 120.00094 * 354.95485 * 13 12 11 15 15 N 1.34782 * 120.00167 * 174.96143 * 13 12 11 16 16 C 1.37140 * 119.99826 * 3.37116 * 15 13 12 17 17 H 1.08002 * 119.99888 * 305.54600 * 16 15 13 18 18 C 1.38887 * 119.99777 * 125.55588 * 16 15 13 19 19 N 1.31423 * 120.00013 * 181.40657 * 18 16 15 20 20 Si 1.86800 * 120.00227 * 1.40170 * 18 16 15 21 21 H 1.48496 * 109.47061 * 95.25831 * 20 18 16 22 22 H 1.48501 * 109.47213 * 215.25755 * 20 18 16 23 23 H 1.48501 * 109.46859 * 335.25841 * 20 18 16 24 24 C 1.39788 * 119.99975 * 183.37588 * 15 13 12 25 25 C 1.38958 * 120.07659 * 171.67902 * 24 15 13 26 26 C 1.38087 * 119.91838 * 179.97438 * 25 24 15 27 27 C 1.38302 * 120.08111 * 359.97438 * 26 25 24 28 28 C 1.38314 * 120.15574 * 0.02562 * 27 26 25 29 29 C 1.38077 * 120.07693 * 0.02562 * 28 27 26 30 30 H 1.09005 * 109.46812 * 269.98112 * 1 2 3 31 31 H 1.08990 * 109.47436 * 29.98267 * 1 2 3 32 32 H 1.09000 * 109.47255 * 149.98953 * 1 2 3 33 33 H 1.08000 * 120.07882 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.78504 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.74999 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.11095 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.47887 * 64.95816 * 12 11 10 38 38 H 1.09003 * 109.46926 * 304.95477 * 12 11 10 39 39 H 0.96998 * 120.00481 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.03800 * 359.69463 * 25 24 15 41 41 H 1.08005 * 119.95616 * 179.97438 * 26 25 24 42 42 H 1.07993 * 119.92496 * 179.97438 * 27 26 25 43 43 H 1.07995 * 119.95904 * 179.97438 * 28 27 26 44 44 H 1.08003 * 120.04165 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2868 1.1153 0.0000 4 6 2.0524 2.4818 0.0010 5 6 3.1156 3.3611 0.0012 6 6 4.4192 2.8872 -0.0001 7 6 4.6705 1.5335 -0.0011 8 6 3.6049 0.6299 -0.0013 9 7 3.5318 -0.7269 0.0039 10 6 2.2755 -1.1001 -0.0017 11 16 1.7153 -2.7707 -0.0024 12 6 3.2989 -3.6332 0.1532 13 6 3.0733 -5.1198 0.0519 14 8 1.9447 -5.5585 -0.0175 15 7 4.1256 -5.9618 0.0387 16 6 5.3978 -5.4716 0.1868 17 1 5.7560 -4.6920 -0.4692 18 6 6.2257 -5.9779 1.1804 19 7 7.4351 -5.4891 1.3404 20 14 5.6201 -7.3536 2.2896 21 1 6.0717 -8.6607 1.7486 22 1 6.1709 -7.1665 3.6560 23 1 4.1364 -7.3271 2.3460 24 6 3.9203 -7.3346 -0.1262 25 6 5.0044 -8.1834 -0.3134 26 6 4.7979 -9.5391 -0.4754 27 6 3.5139 -10.0525 -0.4510 28 6 2.4324 -9.2105 -0.2650 29 6 2.6314 -7.8538 -0.1034 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3634 0.8900 -0.5135 32 1 -0.3634 -0.8899 -0.5140 33 1 1.0397 2.8573 0.0024 34 1 2.9317 4.4254 0.0023 35 1 5.2432 3.5853 -0.0003 36 1 5.6879 1.1713 -0.0025 37 1 3.7472 -3.3987 1.1186 38 1 3.9675 -3.3120 -0.6455 39 1 8.0132 -5.8424 2.0345 40 1 6.0070 -7.7827 -0.3366 41 1 5.6401 -10.1993 -0.6213 42 1 3.3552 -11.1130 -0.5784 43 1 1.4311 -9.6147 -0.2469 44 1 1.7865 -7.1968 0.0415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008807663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:12 Heat of formation + Delta-G solvation = 101.706263 kcal Electronic energy + Delta-G solvation = -29425.582664 eV Core-core repulsion = 25436.236651 eV Total energy + Delta-G solvation = -3989.346013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.92778 -40.20406 -37.68243 -37.26851 -35.28424 -34.27944 -32.30166 -30.62921 -30.47383 -30.19098 -29.40835 -28.06077 -27.03274 -25.34239 -23.62234 -22.31615 -22.05419 -21.48444 -20.85072 -19.61124 -18.35071 -17.43740 -17.26285 -16.61976 -16.52207 -16.03010 -15.89786 -15.53364 -14.93307 -14.78607 -14.17647 -14.11982 -14.08909 -13.81213 -13.67243 -13.42972 -13.06161 -13.02075 -12.92705 -12.88131 -12.56500 -12.31181 -12.06530 -12.03928 -11.70601 -11.53067 -11.42840 -11.09875 -10.74827 -10.47617 -10.40341 -10.37272 -10.14437 -9.92721 -9.47961 -9.07507 -8.98858 -8.64663 -8.18463 -8.10568 -7.36364 -7.16666 -6.61193 -4.59496 0.86258 1.16854 1.47167 1.92849 2.08729 2.19883 2.66151 2.70212 3.10220 3.20041 3.29214 3.34079 3.85944 3.98830 4.05496 4.33108 4.52159 4.52910 4.77641 4.84889 4.92921 4.96147 5.19419 5.23972 5.28181 5.39276 5.44788 5.55209 5.64481 5.65818 5.69209 5.82592 6.04094 6.06410 6.21672 6.31175 6.32795 6.45351 6.46497 6.51779 6.72362 6.80891 6.88150 7.09065 7.14940 7.21436 7.27900 7.64534 7.76265 7.87585 8.08097 8.61865 8.92995 9.18743 10.40869 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.002672 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.689418 B =10478.028812 C =11888.170490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.482 5.482 3 C 0.049 3.951 4 C -0.111 4.111 5 C -0.108 4.108 6 C -0.130 4.130 7 C -0.064 4.064 8 C 0.060 3.940 9 N -0.488 5.488 10 C 0.256 3.744 11 S 0.046 5.954 12 C -0.105 4.105 13 C 0.514 3.486 14 O -0.551 6.551 15 N -0.396 5.396 16 C -0.376 4.376 17 H 0.113 0.887 18 C 0.086 3.914 19 N -0.850 5.850 20 Si 0.871 3.129 21 H -0.253 1.253 22 H -0.289 1.289 23 H -0.257 1.257 24 C 0.157 3.843 25 C -0.157 4.157 26 C -0.105 4.105 27 C -0.168 4.168 28 C -0.109 4.109 29 C -0.182 4.182 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.281 0.719 40 H 0.140 0.860 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.021 10.632 -1.931 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.175 5.175 3 C -0.061 4.061 4 C -0.132 4.132 5 C -0.128 4.128 6 C -0.151 4.151 7 C -0.084 4.084 8 C -0.061 4.061 9 N -0.212 5.212 10 C -0.117 4.117 11 S 0.276 5.724 12 C -0.256 4.256 13 C 0.304 3.696 14 O -0.435 6.435 15 N -0.105 5.105 16 C -0.502 4.502 17 H 0.131 0.869 18 C -0.125 4.125 19 N -0.483 5.483 20 Si 0.697 3.303 21 H -0.178 1.178 22 H -0.216 1.216 23 H -0.181 1.181 24 C 0.061 3.939 25 C -0.177 4.177 26 C -0.124 4.124 27 C -0.188 4.188 28 C -0.128 4.128 29 C -0.201 4.201 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.091 0.909 40 H 0.158 0.842 41 H 0.133 0.867 42 H 0.127 0.873 43 H 0.132 0.868 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.894 9.486 -1.926 14.573 hybrid contribution 0.775 0.305 0.714 1.097 sum -10.119 9.791 -1.212 14.132 Atomic orbital electron populations 1.22008 0.75827 1.04689 1.03763 1.45045 1.06794 1.03819 1.61797 1.18938 0.91049 0.89129 1.06989 1.19855 0.99556 0.88636 1.05177 1.20827 0.92019 0.98953 1.01038 1.20866 0.96873 0.94643 1.02720 1.20349 0.97642 0.91384 0.99058 1.19122 0.92213 0.90189 1.04545 1.71140 1.15496 1.10832 1.23738 1.26007 0.88227 0.95615 1.01832 1.85845 1.10427 0.85026 1.91090 1.23492 0.97085 0.94825 1.10178 1.19914 0.84195 0.87354 0.78107 1.90263 1.23535 1.76551 1.53154 1.41244 1.07256 1.02507 1.59499 1.19082 0.87634 1.24799 1.18670 0.86921 1.25464 0.94937 0.96753 0.95375 1.69646 1.07030 1.39816 1.31763 0.86992 0.81031 0.82741 0.79535 1.17793 1.21623 1.18081 1.18457 0.93753 0.84909 0.96783 1.21043 0.99687 0.93117 1.03870 1.20833 0.96685 0.94603 1.00264 1.20941 0.93062 0.98967 1.05801 1.21021 0.98065 0.93581 1.00097 1.22743 0.98364 0.96311 1.02692 0.90421 0.89653 0.89049 0.86328 0.85496 0.85411 0.85094 0.85357 0.85461 0.90897 0.84241 0.86749 0.87253 0.86850 0.80463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.97 59.85 0.66 1.37 16 2 N -0.48 -6.65 3.23 -121.70 -0.39 -7.04 16 3 C 0.05 0.70 6.87 -83.84 -0.58 0.12 16 4 C -0.11 -1.22 10.04 -39.53 -0.40 -1.62 16 5 C -0.11 -1.06 10.03 -39.51 -0.40 -1.46 16 6 C -0.13 -1.40 10.01 -39.61 -0.40 -1.80 16 7 C -0.06 -0.88 10.10 -39.23 -0.40 -1.28 16 8 C 0.06 0.99 7.22 -84.68 -0.61 0.37 16 9 N -0.49 -8.99 10.54 -10.90 -0.11 -9.11 16 10 C 0.26 4.22 7.93 -88.43 -0.70 3.52 16 11 S 0.05 0.74 20.69 -107.50 -2.22 -1.48 16 12 C -0.10 -2.02 4.49 36.01 0.16 -1.86 16 13 C 0.51 11.24 7.59 -10.98 -0.08 11.16 16 14 O -0.55 -12.20 12.29 5.56 0.07 -12.13 16 15 N -0.40 -9.33 2.30 -58.98 -0.14 -9.47 16 16 C -0.38 -9.38 8.01 -14.94 -0.12 -9.50 16 17 H 0.11 2.95 7.70 -52.49 -0.40 2.55 16 18 C 0.09 2.19 4.61 -17.49 -0.08 2.11 16 19 N -0.85 -22.61 13.96 55.49 0.77 -21.84 16 20 Si 0.87 20.59 23.85 -169.99 -4.05 16.54 16 21 H -0.25 -5.74 6.14 56.52 0.35 -5.39 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.26 -6.36 6.48 56.52 0.37 -5.99 16 24 C 0.16 3.61 4.13 -83.69 -0.35 3.27 16 25 C -0.16 -3.45 5.57 -39.37 -0.22 -3.67 16 26 C -0.11 -2.00 9.76 -39.61 -0.39 -2.39 16 27 C -0.17 -2.96 10.04 -39.53 -0.40 -3.36 16 28 C -0.11 -2.01 10.04 -39.61 -0.40 -2.40 16 29 C -0.18 -3.89 9.03 -39.37 -0.36 -4.25 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.78 7.68 -51.93 -0.40 0.38 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.13 2.55 8.14 -51.92 -0.42 2.13 16 38 H 0.13 2.49 7.69 -51.91 -0.40 2.09 16 39 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.14 3.23 5.70 -52.49 -0.30 2.93 16 41 H 0.11 1.87 8.06 -52.48 -0.42 1.44 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.18 3.90 4.58 -56.00 -0.26 3.65 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -30.19 375.51 -10.67 -40.87 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.21 Total: 9.64 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -5.04 Total: -11.65 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.13 Total: -47.45 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.07 Total: -12.13 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.05 Total: 16.54 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.22 Total: -1.48 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.19 -10.67 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008807663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.574 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds