Wall clock time and date at job start Tue Mar 31 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38538 * 126.38413 * 2 1 4 4 C 1.38647 * 133.88117 * 0.05500 * 3 2 1 5 5 C 1.37977 * 119.85514 * 179.97438 * 4 3 2 6 6 C 1.38700 * 120.43123 * 0.02562 * 5 4 3 7 7 C 1.37688 * 120.49472 * 359.97438 * 6 5 4 8 8 C 1.39716 * 119.78174 * 0.02562 * 7 6 5 9 9 N 1.35877 * 133.37940 * 180.35069 * 8 7 6 10 10 C 1.31058 * 109.62274 * 180.11907 * 9 8 7 11 11 S 1.76201 * 125.07908 * 179.82617 * 10 9 8 12 12 C 1.80994 * 99.99894 * 4.72629 * 11 10 9 13 13 C 1.50699 * 109.47113 * 184.96280 * 12 11 10 14 14 O 1.21281 * 120.00094 * 354.95485 * 13 12 11 15 15 N 1.34782 * 120.00167 * 174.96143 * 13 12 11 16 16 C 1.37140 * 119.99826 * 3.37116 * 15 13 12 17 17 H 1.08002 * 119.99888 * 305.54600 * 16 15 13 18 18 C 1.38887 * 119.99777 * 125.55588 * 16 15 13 19 19 N 1.31423 * 120.00013 * 181.40657 * 18 16 15 20 20 Si 1.86800 * 120.00227 * 1.40170 * 18 16 15 21 21 H 1.48496 * 109.47061 * 95.25831 * 20 18 16 22 22 H 1.48501 * 109.47213 * 215.25755 * 20 18 16 23 23 H 1.48501 * 109.46859 * 335.25841 * 20 18 16 24 24 C 1.39788 * 119.99975 * 183.37588 * 15 13 12 25 25 C 1.38958 * 120.07659 * 171.67902 * 24 15 13 26 26 C 1.38087 * 119.91838 * 179.97438 * 25 24 15 27 27 C 1.38302 * 120.08111 * 359.97438 * 26 25 24 28 28 C 1.38314 * 120.15574 * 0.02562 * 27 26 25 29 29 C 1.38077 * 120.07693 * 0.02562 * 28 27 26 30 30 H 1.09005 * 109.46812 * 269.98112 * 1 2 3 31 31 H 1.08990 * 109.47436 * 29.98267 * 1 2 3 32 32 H 1.09000 * 109.47255 * 149.98953 * 1 2 3 33 33 H 1.08000 * 120.07882 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.78504 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.74999 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.11095 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.47887 * 64.95816 * 12 11 10 38 38 H 1.09003 * 109.46926 * 304.95477 * 12 11 10 39 39 H 0.96998 * 120.00481 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.03800 * 359.69463 * 25 24 15 41 41 H 1.08005 * 119.95616 * 179.97438 * 26 25 24 42 42 H 1.07993 * 119.92496 * 179.97438 * 27 26 25 43 43 H 1.07995 * 119.95904 * 179.97438 * 28 27 26 44 44 H 1.08003 * 120.04165 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2868 1.1153 0.0000 4 6 2.0524 2.4818 0.0010 5 6 3.1156 3.3611 0.0012 6 6 4.4192 2.8872 -0.0001 7 6 4.6705 1.5335 -0.0011 8 6 3.6049 0.6299 -0.0013 9 7 3.5318 -0.7269 0.0039 10 6 2.2755 -1.1001 -0.0017 11 16 1.7153 -2.7707 -0.0024 12 6 3.2989 -3.6332 0.1532 13 6 3.0733 -5.1198 0.0519 14 8 1.9447 -5.5585 -0.0175 15 7 4.1256 -5.9618 0.0387 16 6 5.3978 -5.4716 0.1868 17 1 5.7560 -4.6920 -0.4692 18 6 6.2257 -5.9779 1.1804 19 7 7.4351 -5.4891 1.3404 20 14 5.6201 -7.3536 2.2896 21 1 6.0717 -8.6607 1.7486 22 1 6.1709 -7.1665 3.6560 23 1 4.1364 -7.3271 2.3460 24 6 3.9203 -7.3346 -0.1262 25 6 5.0044 -8.1834 -0.3134 26 6 4.7979 -9.5391 -0.4754 27 6 3.5139 -10.0525 -0.4510 28 6 2.4324 -9.2105 -0.2650 29 6 2.6314 -7.8538 -0.1034 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3634 0.8900 -0.5135 32 1 -0.3634 -0.8899 -0.5140 33 1 1.0397 2.8573 0.0024 34 1 2.9317 4.4254 0.0023 35 1 5.2432 3.5853 -0.0003 36 1 5.6879 1.1713 -0.0025 37 1 3.7472 -3.3987 1.1186 38 1 3.9675 -3.3120 -0.6455 39 1 8.0132 -5.8424 2.0345 40 1 6.0070 -7.7827 -0.3366 41 1 5.6401 -10.1993 -0.6213 42 1 3.3552 -11.1130 -0.5784 43 1 1.4311 -9.6147 -0.2469 44 1 1.7865 -7.1968 0.0415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008807663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:11 Heat of formation + Delta-G solvation = 86.030249 kcal Electronic energy + Delta-G solvation = -29426.262427 eV Core-core repulsion = 25436.236651 eV Total energy + Delta-G solvation = -3990.025776 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.98126 -41.91917 -39.29140 -38.19431 -37.05526 -35.30599 -34.25365 -32.18068 -31.75136 -31.40777 -30.47451 -29.63100 -27.89239 -27.24263 -24.69897 -23.80756 -23.20614 -22.98654 -21.88099 -21.36755 -20.05619 -18.66276 -18.25869 -18.22183 -17.76430 -17.52960 -17.11424 -17.05709 -16.64055 -15.94915 -15.86748 -15.41280 -15.13278 -15.05051 -14.98543 -14.87538 -14.63928 -14.46124 -14.24133 -14.11281 -14.06273 -13.67608 -13.62475 -13.21897 -12.87481 -12.77698 -12.69653 -12.51932 -12.44605 -12.09991 -11.92247 -11.87426 -11.40591 -11.31090 -11.04941 -10.93834 -10.34453 -10.09942 -9.68095 -9.14412 -8.92370 -8.58925 -8.55927 -6.59608 -0.16502 -0.11201 0.34296 0.51267 0.52852 0.78278 1.21557 1.27139 1.36873 1.56629 1.61157 1.73972 2.09351 2.34287 2.69091 2.87936 3.04837 3.33862 3.55336 3.76229 3.96986 4.00704 4.12715 4.13874 4.17537 4.29993 4.38486 4.40144 4.46324 4.47827 4.57329 4.61683 4.64909 4.74702 4.81569 4.82399 5.14298 5.19845 5.38443 5.43644 5.53753 5.54627 5.56388 5.63093 5.69880 5.88577 5.90002 5.93097 5.96762 6.32529 6.64814 6.72118 7.04310 7.34229 8.44926 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.002672 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.689418 B =10478.028812 C =11888.170490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.476 5.476 3 C 0.038 3.962 4 C -0.109 4.109 5 C -0.096 4.096 6 C -0.118 4.118 7 C -0.094 4.094 8 C 0.013 3.987 9 N -0.533 5.533 10 C 0.232 3.768 11 S 0.076 5.924 12 C -0.102 4.102 13 C 0.511 3.489 14 O -0.554 6.554 15 N -0.410 5.410 16 C -0.366 4.366 17 H 0.086 0.914 18 C 0.057 3.943 19 N -0.886 5.886 20 Si 0.919 3.081 21 H -0.235 1.235 22 H -0.291 1.291 23 H -0.274 1.274 24 C 0.126 3.874 25 C -0.179 4.179 26 C -0.105 4.105 27 C -0.154 4.154 28 C -0.103 4.103 29 C -0.200 4.200 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.154 0.846 34 H 0.171 0.829 35 H 0.159 0.841 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.285 0.715 40 H 0.118 0.882 41 H 0.144 0.856 42 H 0.156 0.844 43 H 0.150 0.850 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.449 10.900 -1.995 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.168 5.168 3 C -0.072 4.072 4 C -0.130 4.130 5 C -0.115 4.115 6 C -0.139 4.139 7 C -0.115 4.115 8 C -0.107 4.107 9 N -0.258 5.258 10 C -0.141 4.141 11 S 0.306 5.694 12 C -0.253 4.253 13 C 0.301 3.699 14 O -0.438 6.438 15 N -0.120 5.120 16 C -0.493 4.493 17 H 0.104 0.896 18 C -0.150 4.150 19 N -0.520 5.520 20 Si 0.745 3.255 21 H -0.158 1.158 22 H -0.219 1.219 23 H -0.199 1.199 24 C 0.031 3.969 25 C -0.200 4.200 26 C -0.124 4.124 27 C -0.172 4.172 28 C -0.121 4.121 29 C -0.220 4.220 30 H 0.111 0.889 31 H 0.134 0.866 32 H 0.112 0.888 33 H 0.172 0.828 34 H 0.188 0.812 35 H 0.177 0.823 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.095 0.905 40 H 0.136 0.864 41 H 0.162 0.838 42 H 0.173 0.827 43 H 0.168 0.832 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.345 9.751 -2.004 16.648 hybrid contribution 1.455 0.350 0.640 1.627 sum -11.890 10.100 -1.363 15.661 Atomic orbital electron populations 1.22393 0.73129 1.06349 1.05287 1.45269 1.08239 1.02793 1.60531 1.19337 0.90130 0.90437 1.07292 1.20351 1.01826 0.87021 1.03793 1.21392 0.90964 1.00944 0.98244 1.21292 0.98776 0.93510 1.00280 1.20559 0.96933 0.92812 1.01146 1.19596 0.94441 0.89780 1.06862 1.71002 1.17091 1.12810 1.24862 1.25864 0.88631 0.96083 1.03521 1.85435 1.07368 0.84951 1.91602 1.23254 0.99283 0.93938 1.08799 1.20194 0.83987 0.88102 0.77618 1.90249 1.23368 1.76932 1.53262 1.41290 1.06772 1.03463 1.60485 1.18811 0.88445 1.24075 1.17986 0.89604 1.25885 0.94869 0.98130 0.96137 1.69707 1.08059 1.41347 1.32933 0.86257 0.79318 0.81912 0.78033 1.15836 1.21858 1.19856 1.18737 0.95014 0.84423 0.98722 1.21046 0.98426 0.94680 1.05841 1.21252 0.98755 0.93520 0.98858 1.21440 0.91779 1.01096 1.02910 1.21454 1.00373 0.92205 0.98078 1.22780 0.97271 0.98004 1.03928 0.88905 0.86620 0.88825 0.82817 0.81164 0.82326 0.86091 0.86815 0.86788 0.90494 0.86364 0.83835 0.82678 0.83219 0.81485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 10.97 127.77 1.40 2.52 16 2 N -0.48 -13.07 3.23 -538.96 -1.74 -14.81 16 3 C 0.04 1.07 6.87 38.72 0.27 1.34 16 4 C -0.11 -2.06 10.04 22.31 0.22 -1.84 16 5 C -0.10 -1.52 10.03 22.32 0.22 -1.29 16 6 C -0.12 -2.31 10.01 22.25 0.22 -2.09 16 7 C -0.09 -2.69 10.10 22.50 0.23 -2.47 16 8 C 0.01 0.46 7.22 39.42 0.28 0.75 16 9 N -0.53 -21.22 10.54 -188.40 -1.99 -23.21 16 10 C 0.23 8.08 7.93 179.58 1.42 9.51 16 11 S 0.08 2.63 20.69 -56.49 -1.17 1.46 16 12 C -0.10 -4.27 4.49 71.24 0.32 -3.95 16 13 C 0.51 23.66 7.59 87.66 0.67 24.32 16 14 O -0.55 -25.38 12.29 -3.03 -0.04 -25.42 16 15 N -0.41 -20.36 2.30 -458.89 -1.06 -21.42 16 16 C -0.37 -19.60 8.01 84.02 0.67 -18.92 16 17 H 0.09 4.95 7.70 -2.91 -0.02 4.92 16 18 C 0.06 3.08 4.61 84.91 0.39 3.47 16 19 N -0.89 -49.46 13.96 21.65 0.30 -49.15 16 20 Si 0.92 43.74 23.85 68.60 1.64 45.38 16 21 H -0.23 -10.32 6.14 99.48 0.61 -9.71 16 22 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 23 H -0.27 -13.71 6.48 99.48 0.64 -13.06 16 24 C 0.13 5.91 4.13 38.22 0.16 6.07 16 25 C -0.18 -7.89 5.57 22.41 0.12 -7.76 16 26 C -0.11 -3.73 9.76 22.25 0.22 -3.51 16 27 C -0.15 -4.74 10.04 22.30 0.22 -4.52 16 28 C -0.10 -3.46 10.04 22.25 0.22 -3.24 16 29 C -0.20 -8.49 9.03 22.41 0.20 -8.29 16 30 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.48 7.68 -2.39 -0.02 1.46 16 33 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 37 H 0.11 5.02 8.14 -2.40 -0.02 5.00 16 38 H 0.11 5.01 7.69 -2.39 -0.02 4.99 16 39 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.12 5.64 5.70 -2.91 -0.02 5.63 16 41 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 42 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 43 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 44 H 0.17 7.41 4.58 -58.53 -0.27 7.14 16 Total: -1.00 -71.37 375.51 4.04 -67.33 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.63 Total: 29.76 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 7.47 Total: -9.91 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -4.48 Total: -108.60 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.04 Total: -25.42 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.64 Total: 45.38 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.17 Total: 1.46 kcal Total: -71.37 4.04 -67.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008807663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.361 kcal (2) G-P(sol) polarization free energy of solvation -71.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds