Wall clock time and date at job start Tue Mar 31 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.53010 * 109.47200 * 60.27260 * 3 2 1 5 5 C 1.52992 * 109.47158 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47405 * 60.00173 * 5 4 3 7 7 C 1.53001 * 109.46628 * 299.99641 * 6 5 4 8 8 C 1.53000 * 109.47168 * 60.00444 * 7 6 5 9 9 S 1.65608 * 119.99916 * 180.27320 * 2 1 3 10 10 O 1.42100 * 106.40059 * 23.26834 * 9 2 1 11 11 O 1.42096 * 106.40050 * 156.18867 * 9 2 1 12 12 C 1.76202 * 107.21643 * 269.72891 * 9 2 1 13 13 C 1.38405 * 119.92180 * 269.71950 * 12 9 2 14 14 C 1.38349 * 120.30632 * 179.76656 * 13 12 9 15 15 C 1.37949 * 120.15936 * 0.51525 * 14 13 12 16 16 C 1.39654 * 119.84098 * 359.74404 * 15 14 13 17 17 C 1.47659 * 120.15068 * 180.02562 * 16 15 14 18 18 O 1.21514 * 119.99968 * 179.97438 * 17 16 15 19 19 O 1.34736 * 120.00458 * 359.97100 * 17 16 15 20 20 C 1.34848 * 116.99825 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00618 * 0.02562 * 20 19 17 22 22 C 1.38821 * 119.99531 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99997 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99900 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47209 * 90.00040 * 24 22 20 26 26 H 1.48500 * 109.46968 * 209.99486 * 24 22 20 27 27 H 1.48499 * 109.47535 * 329.99772 * 24 22 20 28 28 C 1.37914 * 119.92411 * 89.99812 * 12 9 2 29 29 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 30 30 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 31 31 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 32 32 H 1.08998 * 109.47712 * 180.27074 * 3 2 1 33 33 H 1.08998 * 109.46636 * 300.00473 * 4 3 2 34 34 H 1.09000 * 109.46705 * 59.99827 * 4 3 2 35 35 H 1.08998 * 109.47500 * 299.99659 * 5 4 3 36 36 H 1.08998 * 109.47284 * 180.02562 * 5 4 3 37 37 H 1.09005 * 109.46997 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.46756 * 59.99587 * 6 5 4 39 39 H 1.08998 * 109.47507 * 299.99485 * 7 6 5 40 40 H 1.09000 * 109.46549 * 179.97438 * 7 6 5 41 41 H 1.08998 * 109.47049 * 179.97438 * 8 7 6 42 42 H 1.08998 * 109.47689 * 59.99152 * 8 7 6 43 43 H 1.07994 * 119.84168 * 0.02562 * 13 12 9 44 44 H 1.08011 * 119.92108 * 180.25727 * 14 13 12 45 45 H 1.08001 * 120.08143 * 179.77141 * 15 14 13 46 46 H 0.96992 * 120.00018 * 180.02562 * 23 22 20 47 47 H 1.07992 * 120.07649 * 359.95758 * 28 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 1.8331 2.0680 1.2527 5 6 2.5977 3.3932 1.2524 6 6 2.2224 4.1983 0.0066 7 6 2.5869 3.3989 -1.2460 8 6 1.8222 2.0737 -1.2458 9 16 2.2930 -1.4342 -0.0068 10 8 1.4090 -2.4052 -0.5500 11 8 3.5736 -1.1555 -0.5559 12 6 2.5606 -1.8899 1.6741 13 6 3.7071 -1.4735 2.3281 14 6 3.9230 -1.8227 3.6493 15 6 3.0007 -2.5980 4.3209 16 6 1.8441 -3.0262 3.6655 17 6 0.8520 -3.8559 4.3780 18 8 -0.1536 -4.2265 3.8053 19 8 1.0617 -4.2021 5.6631 20 6 0.1170 -4.9612 6.2546 21 1 -0.7583 -5.2641 5.6991 22 6 0.2701 -5.3542 7.5771 23 7 -0.6502 -6.0944 8.1534 24 14 1.7844 -4.8309 8.5376 25 1 1.5188 -3.5354 9.2131 26 1 2.1059 -5.8631 9.5556 27 1 2.9321 -4.6783 7.6078 28 6 1.6299 -2.6654 2.3332 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3634 0.8924 -0.5096 31 1 -0.3634 -0.8874 -0.5181 32 1 3.2691 1.0695 -0.0049 33 1 0.7615 2.2672 1.2576 34 1 2.1000 1.4943 2.1402 35 1 3.6694 3.1944 1.2473 36 1 2.3384 3.9625 2.1450 37 1 2.7668 5.1427 0.0067 38 1 1.1507 4.3971 0.0118 39 1 3.6586 3.2002 -1.2512 40 1 2.3191 3.9723 -2.1335 41 1 2.0816 1.5045 -2.1384 42 1 0.7505 2.2725 -1.2406 43 1 4.4345 -0.8698 1.8059 44 1 4.8180 -1.4909 4.1549 45 1 3.1723 -2.8729 5.3511 46 1 -0.5434 -6.3686 9.0776 47 1 0.7376 -2.9928 1.8205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009836504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:31 Heat of formation + Delta-G solvation = -135.310675 kcal Electronic energy + Delta-G solvation = -31627.025298 eV Core-core repulsion = 27287.799789 eV Total energy + Delta-G solvation = -4339.225509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.133 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -39.81524 -39.35714 -38.42904 -37.40297 -35.98328 -35.46578 -35.39366 -32.51157 -31.53092 -31.14245 -31.10674 -29.88924 -26.53626 -26.02659 -23.72600 -23.15408 -22.90819 -22.43073 -20.60690 -19.95735 -19.08720 -18.29379 -18.09552 -17.62018 -16.66596 -16.42156 -16.04721 -15.58322 -15.14546 -14.95268 -14.89730 -14.62755 -14.53397 -14.37147 -14.26639 -14.07350 -13.79353 -13.41880 -12.99164 -12.78496 -12.72184 -12.62156 -12.51012 -12.47789 -12.27704 -12.17373 -12.15473 -11.85053 -11.56178 -11.49286 -11.48323 -11.42043 -10.96524 -10.91133 -10.66424 -10.64821 -10.55410 -10.52158 -9.84438 -9.49381 -9.38963 -9.23301 -9.04229 -8.81767 -6.52371 -4.23551 0.19370 0.67351 1.02975 2.66458 2.98902 3.13410 3.15867 3.24165 3.56367 3.83606 3.94496 4.10784 4.17219 4.25805 4.38986 4.47746 4.66786 4.74751 4.83675 4.86573 4.89708 5.00160 5.05053 5.10385 5.13439 5.14375 5.25785 5.28496 5.32836 5.35974 5.41753 5.44805 5.64541 5.68850 5.71005 5.74816 5.78732 5.82244 5.83294 5.91620 5.96858 6.09956 6.12576 6.26443 6.33824 6.41247 6.72836 7.57235 7.89122 8.47741 8.84309 9.51029 10.55214 Molecular weight = 367.13amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.002552 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.557956 B =10969.786106 C =11461.827330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.996 5.996 3 C 0.147 3.853 4 C -0.132 4.132 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.127 4.127 9 S 2.693 3.307 10 O -0.950 6.950 11 O -0.957 6.957 12 C -0.688 4.688 13 C -0.012 4.012 14 C -0.148 4.148 15 C -0.025 4.025 16 C -0.104 4.104 17 C 0.440 3.560 18 O -0.531 6.531 19 O -0.241 6.241 20 C -0.374 4.374 21 H 0.113 0.887 22 C 0.066 3.934 23 N -0.863 5.863 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.279 1.279 27 H -0.259 1.259 28 C 0.030 3.970 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.145 0.855 46 H 0.282 0.718 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.351 21.403 -15.074 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.833 5.833 3 C 0.042 3.958 4 C -0.171 4.171 5 C -0.157 4.157 6 C -0.159 4.159 7 C -0.156 4.156 8 C -0.166 4.166 9 S 2.785 3.215 10 O -0.941 6.941 11 O -0.947 6.947 12 C -0.775 4.775 13 C -0.032 4.032 14 C -0.167 4.167 15 C -0.043 4.043 16 C -0.106 4.106 17 C 0.288 3.712 18 O -0.428 6.428 19 O -0.149 6.149 20 C -0.449 4.449 21 H 0.131 0.869 22 C -0.139 4.139 23 N -0.501 5.501 24 Si 0.730 3.270 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.183 1.183 28 C 0.010 3.990 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.162 0.838 46 H 0.093 0.907 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.249 20.685 -15.727 27.581 hybrid contribution 0.406 0.071 1.536 1.591 sum 9.655 20.756 -14.190 26.933 Atomic orbital electron populations 1.21639 0.77985 1.04325 1.02673 1.57508 1.15539 1.20730 1.89510 1.21001 0.96504 0.82722 0.95596 1.21947 1.01391 0.96133 0.97603 1.21521 1.00404 0.95639 0.98121 1.21571 1.01486 0.98315 0.94533 1.21522 1.00553 0.95514 0.98048 1.21877 1.01088 0.96045 0.97567 1.01957 0.73213 0.72436 0.73919 1.93596 1.65756 1.58288 1.76412 1.93558 1.40372 1.84509 1.76269 1.30856 1.04629 1.15265 1.26722 1.20979 0.93682 0.94151 0.94347 1.21241 1.00306 1.00343 0.94760 1.21911 0.91071 0.90890 1.00456 1.19499 0.95746 1.01068 0.94306 1.20322 0.86154 0.82730 0.82013 1.90699 1.29211 1.55190 1.67654 1.83503 1.47684 1.59746 1.23965 1.20747 1.00891 1.27347 0.95917 0.86933 1.24595 0.98409 0.95304 0.95612 1.69581 1.33528 1.33208 1.13826 0.86216 0.82479 0.78729 0.79539 1.19643 1.20480 1.18345 1.20955 0.96582 0.89036 0.92427 0.92248 0.90314 0.89585 0.88153 0.91087 0.91218 0.91664 0.91568 0.91924 0.91903 0.91555 0.91621 0.91301 0.91155 0.84307 0.84533 0.83767 0.90707 0.83063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 9.73 59.84 0.58 1.25 16 2 N -1.00 -9.67 3.07 -114.61 -0.35 -10.02 16 3 C 0.15 1.20 2.51 -67.93 -0.17 1.03 16 4 C -0.13 -0.95 5.21 -26.73 -0.14 -1.09 16 5 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 6 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 7 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 8 C -0.13 -0.87 5.18 -26.73 -0.14 -1.01 16 9 S 2.69 34.51 5.69 -107.50 -0.61 33.90 16 10 O -0.95 -14.97 15.87 -57.17 -0.91 -15.88 16 11 O -0.96 -13.27 15.83 -57.17 -0.91 -14.18 16 12 C -0.69 -9.48 5.97 -39.64 -0.24 -9.72 16 13 C -0.01 -0.14 9.52 -39.48 -0.38 -0.52 16 14 C -0.15 -1.79 10.03 -39.65 -0.40 -2.19 16 15 C -0.02 -0.38 9.62 -39.16 -0.38 -0.76 16 16 C -0.10 -1.95 5.87 -104.98 -0.62 -2.57 16 17 C 0.44 10.59 7.84 34.58 0.27 10.86 16 18 O -0.53 -14.29 15.59 -19.28 -0.30 -14.59 16 19 O -0.24 -6.23 7.82 -21.63 -0.17 -6.40 16 20 C -0.37 -10.88 10.11 30.95 0.31 -10.57 16 21 H 0.11 3.62 7.09 -52.49 -0.37 3.25 16 22 C 0.07 1.83 5.50 -17.52 -0.10 1.74 16 23 N -0.86 -24.86 13.96 55.49 0.77 -24.08 16 24 Si 0.91 20.50 28.62 -169.99 -4.86 15.63 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 27 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 28 C 0.03 0.50 9.07 -39.16 -0.36 0.14 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.49 6.41 -51.93 -0.33 0.16 16 31 H 0.09 0.79 7.02 -51.93 -0.36 0.43 16 32 H 0.10 0.84 6.91 -51.93 -0.36 0.48 16 33 H 0.07 0.50 7.68 -51.93 -0.40 0.10 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.44 6.65 -51.93 -0.35 0.09 16 43 H 0.14 1.29 7.60 -52.49 -0.40 0.89 16 44 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 45 H 0.14 2.20 7.61 -52.49 -0.40 1.80 16 46 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.15 2.60 7.20 -52.49 -0.38 2.22 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -34.72 395.49 -10.30 -45.02 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.71 Total: 0.57 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.21 Total: -15.93 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.42 Total: -34.10 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -2.28 Total: -51.05 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.86 Total: 15.63 kcal Atomic # 16 Polarization: 34.51 SS G_CDS: -0.61 Total: 33.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.72 -10.30 -45.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009836504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.293 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds