Wall clock time and date at job start Tue Mar 31 2020 05:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29858 * 118.32645 * 2 1 4 4 C 1.35622 * 121.64189 * 180.28393 * 3 2 1 5 5 C 1.39721 * 121.57524 * 179.70877 * 4 3 2 6 6 C 1.36517 * 119.90774 * 180.02562 * 5 4 3 7 7 C 1.39484 * 120.89515 * 0.02562 * 6 5 4 8 8 O 1.35746 * 119.79275 * 179.97438 * 7 6 5 9 9 C 1.34821 * 116.99845 * 185.89489 * 8 7 6 10 10 H 1.07999 * 119.99766 * 5.52046 * 9 8 7 11 11 C 1.38629 * 119.99974 * 185.51970 * 9 8 7 12 12 N 1.31574 * 120.00183 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99926 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47123 * 90.00104 * 13 11 9 15 15 H 1.48506 * 109.46895 * 209.99778 * 13 11 9 16 16 H 1.48497 * 109.46904 * 329.99512 * 13 11 9 17 17 C 1.38474 * 120.41229 * 359.97438 * 7 6 5 18 18 C 1.39264 * 119.32136 * 0.02562 * 17 7 6 19 19 C 1.47015 * 121.93023 * 179.97438 * 18 17 7 20 20 O 1.21734 * 121.29500 * 0.04158 * 19 18 17 21 21 N 1.35348 * 117.41089 * 180.02562 * 19 18 17 22 22 C 1.40160 * 119.71618 * 179.97438 * 21 19 18 23 23 C 1.38856 * 119.99821 * 294.31319 * 22 21 19 24 24 C 1.38150 * 120.06846 * 179.97438 * 23 22 21 25 25 C 1.38581 * 120.12028 * 0.02562 * 24 23 22 26 26 C 1.39303 * 119.93576 * 359.97438 * 25 24 23 27 27 C 1.38466 * 119.90157 * 0.02562 * 26 25 24 28 28 O 1.36521 * 108.63513 * 180.02562 * 26 25 24 29 29 C 1.43981 * 105.49202 * 17.29031 * 28 26 25 30 30 O 1.36566 * 131.44786 * 179.68132 * 25 24 23 31 31 H 1.09001 * 109.47037 * 265.13439 * 1 2 3 32 32 H 1.09001 * 109.47656 * 25.13511 * 1 2 3 33 33 H 1.09004 * 109.47011 * 145.13588 * 1 2 3 34 34 H 1.08003 * 120.05017 * 0.02562 * 5 4 3 35 35 H 1.08003 * 119.55471 * 180.02562 * 6 5 4 36 36 H 0.97000 * 120.00535 * 180.02562 * 12 11 9 37 37 H 1.07996 * 120.34039 * 179.97438 * 17 7 6 38 38 H 1.08002 * 119.96876 * 0.02562 * 23 22 21 39 39 H 1.07998 * 119.94249 * 180.02562 * 24 23 22 40 40 H 1.07999 * 120.01354 * 179.97438 * 27 26 25 41 41 H 1.09002 * 110.56699 * 91.42035 * 29 28 26 42 42 H 1.09003 * 110.57170 * 214.28337 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1231 1.1431 0.0000 4 6 3.4771 1.2215 -0.0057 5 6 4.1386 2.4522 -0.0118 6 6 5.5032 2.4915 -0.0180 7 6 6.2535 1.3156 -0.0189 8 8 7.6094 1.3808 -0.0256 9 6 8.2775 0.2163 -0.1495 10 1 7.7356 -0.7009 -0.3271 11 6 9.6600 0.1963 -0.0491 12 7 10.3202 1.3137 0.1668 13 14 10.5857 -1.4171 -0.2215 14 1 10.9344 -1.6377 -1.6480 15 1 11.8287 -1.3636 0.5894 16 1 9.7300 -2.5323 0.2572 17 6 5.6239 0.0823 -0.0130 18 6 4.2324 0.0270 -0.0066 19 6 3.5051 -1.2506 -0.0008 20 8 4.0962 -2.3148 -0.0005 21 7 2.1526 -1.1977 0.0046 22 6 1.4108 -2.3868 0.0098 23 6 1.4589 -3.2399 -1.0847 24 6 0.7287 -4.4127 -1.0809 25 6 -0.0541 -4.7409 0.0145 26 6 -0.1044 -3.8869 1.1139 27 6 0.6279 -2.7117 1.1092 28 8 -0.9361 -4.4300 2.0505 29 6 -1.0725 -5.8163 1.6861 30 8 -0.8593 -5.8162 0.2605 31 1 -0.3633 -0.0872 1.0240 32 1 -0.3634 0.9303 -0.4365 33 1 -0.3633 -0.8432 -0.5875 34 1 3.5712 3.3712 -0.0115 35 1 6.0086 3.4459 -0.0222 36 1 11.2876 1.2998 0.2367 37 1 6.2060 -0.8273 -0.0141 38 1 2.0685 -2.9868 -1.9396 39 1 0.7680 -5.0749 -1.9331 40 1 0.5899 -2.0482 1.9604 41 1 -0.3182 -6.4207 2.1901 42 1 -2.0737 -6.1774 1.9212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012389649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:01 Heat of formation + Delta-G solvation = -25.608901 kcal Electronic energy + Delta-G solvation = -31848.430137 eV Core-core repulsion = 27340.403270 eV Total energy + Delta-G solvation = -4508.026867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.109 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.57406 -41.57725 -39.21494 -38.00656 -37.60106 -36.64653 -36.20015 -33.63447 -32.42071 -31.35639 -30.86433 -30.44028 -29.38203 -27.30513 -26.21407 -25.53299 -24.46891 -23.45518 -22.74357 -22.29363 -21.50659 -19.32788 -18.70472 -18.26818 -18.22748 -17.74887 -17.47870 -16.88858 -16.49506 -15.88012 -15.72397 -14.87878 -14.82164 -14.62670 -14.39726 -14.31183 -14.23621 -13.83496 -13.72971 -13.62839 -13.42001 -13.36660 -13.30527 -13.21695 -12.80491 -12.53768 -12.26799 -12.17027 -11.82606 -11.74983 -11.42233 -11.25963 -11.20316 -10.86342 -10.53739 -10.10700 -9.91110 -9.63308 -9.41205 -9.19786 -8.86675 -8.62819 -8.35327 -7.03885 -6.64943 -4.18780 0.58506 0.82193 1.09384 1.37558 2.17665 2.62479 2.63708 3.01566 3.07276 3.08281 3.12254 3.14195 3.32556 3.84515 4.06603 4.19080 4.29072 4.44947 4.49114 4.58937 4.68729 4.73243 4.77954 4.84769 4.92338 4.99388 5.12252 5.29889 5.34927 5.42660 5.45082 5.64149 5.69605 5.77589 5.81108 5.86549 5.94824 5.97589 6.13289 6.41214 6.51785 6.56368 6.73774 6.80055 6.85346 7.01498 7.16933 7.38636 7.79077 7.98014 8.26312 8.79869 9.42514 10.51181 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.012410 B = 0.002586 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.723029 B =10824.740294 C =12580.293619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.331 3.669 3 N -0.478 5.478 4 C 0.037 3.963 5 C -0.054 4.054 6 C -0.140 4.140 7 C 0.140 3.860 8 O -0.159 6.159 9 C -0.390 4.390 10 H 0.098 0.902 11 C 0.043 3.957 12 N -0.851 5.851 13 Si 0.943 3.057 14 H -0.270 1.270 15 H -0.275 1.275 16 H -0.263 1.263 17 C -0.172 4.172 18 C -0.126 4.126 19 C 0.548 3.452 20 O -0.506 6.506 21 N -0.499 5.499 22 C 0.136 3.864 23 C -0.084 4.084 24 C -0.086 4.086 25 C 0.036 3.964 26 C 0.043 3.957 27 C -0.092 4.092 28 O -0.306 6.306 29 C 0.213 3.787 30 O -0.307 6.307 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.274 0.726 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.087 0.913 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.404 -9.028 0.210 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.065 3.935 3 N -0.196 5.196 4 C -0.072 4.072 5 C -0.074 4.074 6 C -0.160 4.160 7 C 0.084 3.916 8 O -0.060 6.060 9 C -0.466 4.466 10 H 0.115 0.885 11 C -0.163 4.163 12 N -0.483 5.483 13 Si 0.766 3.234 14 H -0.195 1.195 15 H -0.200 1.200 16 H -0.188 1.188 17 C -0.193 4.193 18 C -0.132 4.132 19 C 0.343 3.657 20 O -0.380 6.380 21 N -0.223 5.223 22 C 0.045 3.955 23 C -0.104 4.104 24 C -0.105 4.105 25 C -0.008 4.008 26 C -0.002 4.002 27 C -0.113 4.113 28 O -0.222 6.222 29 C 0.101 3.899 30 O -0.223 6.223 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.084 0.916 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.104 0.896 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.957 -8.594 0.323 23.581 hybrid contribution 0.915 -1.735 0.189 1.970 sum -21.043 -10.329 0.512 23.447 Atomic orbital electron populations 1.20847 0.86328 1.04705 1.03857 1.22593 0.95581 0.79518 0.95774 1.68183 1.10102 1.21892 1.19417 1.18253 0.87424 0.92943 1.08539 1.20115 0.92778 0.95696 0.98781 1.20161 0.92793 0.97176 1.05887 1.19334 0.85288 0.92629 0.94320 1.83989 1.11828 1.33992 1.76196 1.21488 0.89452 0.85332 1.50300 0.88509 1.25367 0.95596 0.99443 0.95907 1.70036 1.08826 1.26480 1.43007 0.85666 0.78945 0.79825 0.78920 1.19540 1.19993 1.18766 1.20957 0.92016 0.99026 1.07307 1.20136 0.94901 0.90892 1.07236 1.18717 0.80064 0.90442 0.76499 1.90852 1.67104 1.31488 1.48534 1.43936 1.06959 1.05365 1.66025 1.17076 0.96122 0.88349 0.93931 1.20968 0.98551 0.93018 0.97846 1.19903 0.95599 0.97650 0.97381 1.19842 0.95563 0.88748 0.96678 1.19347 0.95295 0.96319 0.89242 1.19916 0.96889 0.95764 0.98681 1.87381 1.62532 1.23646 1.48635 1.25698 1.04240 0.82190 0.77751 1.87427 1.64080 1.45718 1.25065 0.89673 0.88530 0.90359 0.84961 0.85047 0.91566 0.83829 0.83890 0.83777 0.84009 0.89591 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 8.73 36.00 0.31 -0.61 16 2 C 0.33 4.67 7.48 -155.01 -1.16 3.51 16 3 N -0.48 -7.83 10.23 -8.11 -0.08 -7.91 16 4 C 0.04 0.69 6.63 -84.46 -0.56 0.13 16 5 C -0.05 -0.96 9.97 -39.65 -0.40 -1.35 16 6 C -0.14 -2.74 9.89 -39.74 -0.39 -3.13 16 7 C 0.14 3.26 6.65 -39.03 -0.26 3.00 16 8 O -0.16 -4.30 9.75 0.09 0.00 -4.30 16 9 C -0.39 -10.60 9.43 30.88 0.29 -10.31 16 10 H 0.10 2.51 5.28 -52.49 -0.28 2.23 16 11 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 12 N -0.85 -23.92 13.67 55.48 0.76 -23.16 16 13 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 14 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 17 C -0.17 -3.89 8.75 -39.11 -0.34 -4.23 16 18 C -0.13 -2.59 5.89 -104.78 -0.62 -3.21 16 19 C 0.55 10.57 7.52 -12.45 -0.09 10.48 16 20 O -0.51 -10.84 16.35 5.16 0.08 -10.76 16 21 N -0.50 -7.68 2.69 -58.32 -0.16 -7.83 16 22 C 0.14 1.77 3.55 -83.60 -0.30 1.47 16 23 C -0.08 -0.99 9.36 -39.38 -0.37 -1.36 16 24 C -0.09 -0.87 10.05 -39.49 -0.40 -1.27 16 25 C 0.04 0.39 7.15 -39.06 -0.28 0.11 16 26 C 0.04 0.48 7.15 -39.10 -0.28 0.20 16 27 C -0.09 -1.07 8.55 -39.28 -0.34 -1.40 16 28 O -0.31 -3.07 11.40 -45.76 -0.52 -3.60 16 29 C 0.21 1.49 8.89 101.05 0.90 2.39 16 30 O -0.31 -2.98 11.42 -45.91 -0.52 -3.51 16 31 H 0.08 0.67 7.95 -51.93 -0.41 0.26 16 32 H 0.10 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.08 0.65 6.94 -51.93 -0.36 0.29 16 34 H 0.13 1.93 8.06 -52.48 -0.42 1.50 16 35 H 0.13 2.34 8.06 -52.48 -0.42 1.91 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.14 3.42 5.48 -52.49 -0.29 3.13 16 38 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.14 1.50 7.97 -52.49 -0.42 1.08 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 366.11 15.07 5.52 5.52 Total: -1.00 -32.91 366.11 -8.17 -41.08 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -3.85 Total: 3.81 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -4.37 Total: -4.52 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.52 Total: -38.90 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.96 Total: -22.16 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.91 -8.17 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012389649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.472 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds