Wall clock time and date at job start Tue Mar 31 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47094 * 2 1 4 4 N 1.30104 * 124.95350 * 270.02404 * 3 2 1 5 5 C 1.35778 * 109.64602 * 179.97438 * 4 3 2 6 6 C 1.39752 * 133.59764 * 180.02562 * 5 4 3 7 7 C 1.36594 * 119.88377 * 179.97438 * 6 5 4 8 8 C 1.38777 * 120.67007 * 359.97438 * 7 6 5 9 9 C 1.37859 * 120.45246 * 0.02562 * 8 7 6 10 10 C 1.38828 * 119.68699 * 359.70799 * 9 8 7 11 11 N 1.36042 * 124.95025 * 89.99897 * 3 2 1 12 12 C 1.46501 * 126.34888 * 0.02796 * 11 3 2 13 13 C 1.52998 * 109.47460 * 89.99542 * 12 11 3 14 14 H 1.08999 * 109.46866 * 305.00063 * 13 12 11 15 15 O 1.42903 * 109.47042 * 65.00052 * 13 12 11 16 16 C 1.53005 * 109.47050 * 185.00213 * 13 12 11 17 17 O 1.42900 * 109.47151 * 175.00420 * 16 13 12 18 18 C 1.35674 * 117.00000 * 179.97438 * 17 16 13 19 19 C 1.39306 * 119.81551 * 179.97438 * 18 17 16 20 20 C 1.36437 * 120.18299 * 180.24948 * 19 18 17 21 21 C 1.40828 * 119.81112 * 359.46711 * 20 19 18 22 22 C 1.41219 * 120.18145 * 180.24830 * 21 20 19 23 23 H 1.08001 * 120.00337 * 204.71821 * 22 21 20 24 24 C 1.39892 * 119.99871 * 24.71107 * 22 21 20 25 25 N 1.30882 * 119.99699 * 17.78848 * 24 22 21 26 26 Si 1.86795 * 120.00105 * 197.78411 * 24 22 21 27 27 H 1.48500 * 109.47449 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47313 * 120.00177 * 26 24 22 29 29 H 1.48506 * 109.47384 * 240.00222 * 26 24 22 30 30 C 1.40835 * 119.64125 * 0.53593 * 21 20 19 31 31 C 1.36436 * 119.81093 * 359.73331 * 30 21 20 32 32 H 1.08995 * 109.46884 * 60.00101 * 1 2 3 33 33 H 1.08999 * 109.47029 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46850 * 299.99945 * 1 2 3 35 35 H 1.08993 * 109.47415 * 239.99799 * 2 1 3 36 36 H 1.09004 * 109.46976 * 120.00026 * 2 1 3 37 37 H 1.07998 * 120.05249 * 359.93300 * 6 5 4 38 38 H 1.08002 * 119.66637 * 180.02562 * 7 6 5 39 39 H 1.08009 * 119.77669 * 179.97438 * 8 7 6 40 40 H 1.08006 * 120.15189 * 179.97438 * 9 8 7 41 41 H 1.09003 * 109.46963 * 329.99309 * 12 11 3 42 42 H 1.09001 * 109.46657 * 209.99954 * 12 11 3 43 43 H 0.96697 * 113.99562 * 59.99640 * 15 13 12 44 44 H 1.08997 * 109.47257 * 54.99936 * 16 13 12 45 45 H 1.09006 * 109.46784 * 294.99553 * 16 13 12 46 46 H 1.08000 * 119.91286 * 359.97438 * 19 18 17 47 47 H 1.08009 * 120.09214 * 179.70252 * 20 19 18 48 48 H 0.97005 * 119.99704 * 180.02562 * 25 24 22 49 49 H 1.07998 * 120.09278 * 179.71205 * 30 21 20 50 50 H 1.08002 * 119.90676 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2804 2.1237 -1.0664 5 6 2.7165 3.3586 -0.7079 6 6 3.1144 4.4872 -1.4297 7 6 3.5119 5.6135 -0.7670 8 6 3.5250 5.6513 0.6202 9 6 3.1366 4.5499 1.3528 10 6 2.7242 3.3982 0.6965 11 7 2.2921 2.1556 1.1151 12 6 2.1360 1.7126 2.5027 13 6 3.4418 1.0779 2.9855 14 1 3.7307 0.2780 2.3037 15 8 4.4698 2.0700 3.0187 16 6 3.2413 0.5039 4.3895 17 8 4.4234 -0.1899 4.7937 18 6 4.4115 -0.7620 6.0239 19 6 5.5328 -1.4535 6.4770 20 6 5.5272 -2.0360 7.7108 21 6 4.3878 -1.9273 8.5312 22 6 4.3754 -2.5228 9.8116 23 1 3.4370 -2.7958 10.2712 24 6 5.5788 -2.7591 10.4847 25 7 6.6687 -2.1359 10.1150 26 14 5.6300 -3.9640 11.9112 27 1 4.2753 -4.5322 12.1283 28 1 6.5818 -5.0604 11.5991 29 1 6.0739 -3.2580 13.1399 30 6 3.2584 -1.2266 8.0654 31 6 3.2783 -0.6545 6.8269 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5139 0.8900 37 1 3.1083 4.4685 -2.5095 38 1 3.8183 6.4839 -1.3283 39 1 3.8423 6.5494 1.1294 40 1 3.1491 4.5845 2.4323 41 1 1.3320 0.9790 2.5617 42 1 1.8936 2.5687 3.1323 43 1 4.2796 2.8139 3.6066 44 1 2.3987 -0.1875 4.3825 45 1 3.0396 1.3156 5.0885 46 1 6.4074 -1.5324 5.8483 47 1 6.3956 -2.5759 8.0587 48 1 7.5032 -2.3000 10.5815 49 1 2.3790 -1.1426 8.6866 50 1 2.4129 -0.1172 6.4680 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012506055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:07 Heat of formation + Delta-G solvation = -2.611171 kcal Electronic energy + Delta-G solvation = -31705.078295 eV Core-core repulsion = 27469.714873 eV Total energy + Delta-G solvation = -4235.363422 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.44382 -39.22612 -37.98969 -37.45486 -36.19798 -34.21364 -33.81659 -33.39717 -31.36135 -30.19476 -29.54245 -29.05232 -28.95638 -26.41284 -24.80767 -24.70673 -22.78024 -22.33715 -21.77566 -20.82910 -20.74648 -20.09664 -17.82841 -17.68755 -17.43243 -16.87970 -16.62728 -16.17724 -15.87824 -15.64465 -15.22790 -14.74909 -14.51526 -14.48002 -14.21367 -14.02009 -14.01506 -13.90758 -13.79645 -12.97540 -12.96279 -12.62559 -12.41172 -12.24373 -12.19676 -11.98148 -11.96462 -11.77313 -11.68649 -11.56454 -11.46518 -11.27685 -11.17908 -10.95528 -10.73593 -10.67011 -10.20317 -10.09686 -10.07088 -9.89239 -9.42626 -9.09944 -8.45087 -8.24461 -7.73074 -7.12171 -6.79258 -4.32975 0.77681 1.36088 2.24202 2.56023 2.70029 2.86706 3.04818 3.09517 3.14277 3.61556 3.73699 3.85191 3.90042 3.97459 4.17649 4.36460 4.54205 4.62743 4.66958 4.73862 4.79102 4.81034 4.85454 4.90714 5.00105 5.07745 5.26071 5.26526 5.34558 5.38233 5.43684 5.50231 5.58496 5.62178 5.70592 5.79041 5.94363 5.95565 6.13562 6.26671 6.33954 6.35835 6.63081 6.70591 6.88681 6.90127 7.02913 7.10779 7.35432 7.40753 7.47588 7.69590 7.71913 7.93391 8.12476 8.35066 8.57057 8.82829 8.90409 10.15263 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.001725 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.832808 B =16225.190009 C =17120.890588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C 0.287 3.713 4 N -0.494 5.494 5 C 0.045 3.955 6 C -0.068 4.068 7 C -0.130 4.130 8 C -0.106 4.106 9 C -0.101 4.101 10 C 0.059 3.941 11 N -0.478 5.478 12 C 0.079 3.921 13 C 0.095 3.905 14 H 0.111 0.889 15 O -0.538 6.538 16 C 0.041 3.959 17 O -0.315 6.315 18 C -0.013 4.013 19 C -0.117 4.117 20 C -0.134 4.134 21 C 0.089 3.911 22 C -0.462 4.462 23 H 0.077 0.923 24 C 0.074 3.926 25 N -0.797 5.797 26 Si 0.907 3.093 27 H -0.261 1.261 28 H -0.272 1.272 29 H -0.275 1.275 30 C -0.199 4.199 31 C -0.167 4.167 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.371 0.629 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.098 0.902 47 H 0.126 0.874 48 H 0.280 0.720 49 H 0.095 0.905 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.607 10.190 -16.821 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 C 0.022 3.978 4 N -0.213 5.213 5 C -0.074 4.074 6 C -0.087 4.087 7 C -0.150 4.150 8 C -0.126 4.126 9 C -0.122 4.122 10 C -0.050 4.050 11 N -0.167 5.167 12 C -0.044 4.044 13 C 0.035 3.965 14 H 0.129 0.871 15 O -0.343 6.343 16 C -0.037 4.037 17 O -0.231 6.231 18 C -0.056 4.056 19 C -0.136 4.136 20 C -0.153 4.153 21 C 0.087 3.913 22 C -0.492 4.492 23 H 0.095 0.905 24 C -0.143 4.143 25 N -0.423 5.423 26 Si 0.732 3.268 27 H -0.185 1.185 28 H -0.197 1.197 29 H -0.200 1.200 30 C -0.219 4.219 31 C -0.186 4.186 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.218 0.782 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.144 0.856 48 H 0.091 0.909 49 H 0.113 0.887 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.027 9.511 -18.017 22.283 hybrid contribution -0.287 0.218 2.217 2.246 sum -9.315 9.728 -15.799 20.761 Atomic orbital electron populations 1.21741 0.93288 1.02835 1.02626 1.20219 0.96905 0.86882 1.05023 1.23606 0.97678 0.95857 0.80633 1.70392 1.20403 1.03355 1.27193 1.19041 1.04354 0.93542 0.90415 1.19983 0.98711 0.90397 0.99624 1.20611 1.02044 0.97992 0.94396 1.20867 1.00094 0.97625 0.93990 1.19912 1.02179 0.90827 0.99281 1.18800 1.03677 0.87424 0.95052 1.45051 1.54404 1.10698 1.06591 1.22477 0.99578 1.02038 0.80302 1.22329 0.86749 0.91200 0.96242 0.87100 1.86729 1.44142 1.34547 1.68844 1.22988 0.89545 0.96580 0.94538 1.85893 1.36011 1.68375 1.32809 1.18584 0.96531 1.05225 0.85271 1.19840 0.95512 1.01105 0.97105 1.20992 1.00377 1.02122 0.91806 1.17613 0.90930 0.89872 0.92928 1.19504 0.93413 1.35440 1.00831 0.90462 1.25899 0.95137 0.94770 0.98485 1.69839 1.00942 1.33446 1.38044 0.86278 0.79530 0.80620 0.80391 1.18454 1.19693 1.20032 1.20553 1.00124 1.04848 0.96391 1.20365 0.96281 1.05195 0.96717 0.91691 0.91008 0.92718 0.87948 0.89605 0.85623 0.85546 0.85396 0.86313 0.87515 0.88403 0.78187 0.92067 0.92569 0.88430 0.85629 0.90880 0.88723 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.05 -0.41 6.00 -27.88 -0.17 -0.58 16 3 C 0.29 3.28 7.11 -154.82 -1.10 2.18 16 4 N -0.49 -6.78 11.27 -8.23 -0.09 -6.87 16 5 C 0.04 0.59 7.23 -84.70 -0.61 -0.02 16 6 C -0.07 -0.75 10.05 -39.61 -0.40 -1.15 16 7 C -0.13 -1.18 9.96 -39.98 -0.40 -1.58 16 8 C -0.11 -0.95 10.03 -39.52 -0.40 -1.35 16 9 C -0.10 -1.02 10.05 -39.50 -0.40 -1.42 16 10 C 0.06 0.71 6.75 -83.99 -0.57 0.15 16 11 N -0.48 -5.17 2.75 -111.16 -0.31 -5.48 16 12 C 0.08 0.66 5.37 -4.04 -0.02 0.64 16 13 C 0.10 1.06 3.49 -26.73 -0.09 0.97 16 14 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 15 O -0.54 -6.92 13.13 -40.08 -0.53 -7.44 16 16 C 0.04 0.55 4.37 37.16 0.16 0.71 16 17 O -0.32 -6.06 10.09 -23.57 -0.24 -6.30 16 18 C -0.01 -0.29 6.71 -38.79 -0.26 -0.55 16 19 C -0.12 -2.77 9.92 -39.83 -0.40 -3.17 16 20 C -0.13 -3.42 8.64 -39.25 -0.34 -3.76 16 21 C 0.09 2.31 5.57 -106.80 -0.60 1.72 16 22 C -0.46 -11.98 9.04 -37.83 -0.34 -12.32 16 23 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 24 C 0.07 1.83 5.13 -17.34 -0.09 1.74 16 25 N -0.80 -20.29 10.96 55.54 0.61 -19.68 16 26 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 27 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 28 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 29 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 30 C -0.20 -4.71 9.74 -39.25 -0.38 -5.09 16 31 C -0.17 -3.55 8.96 -39.83 -0.36 -3.91 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.59 7.65 -51.93 -0.40 0.19 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 41 H 0.11 0.67 7.62 -51.93 -0.40 0.27 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.37 3.49 9.04 45.56 0.41 3.90 16 44 H 0.06 0.73 7.65 -51.93 -0.40 0.33 16 45 H 0.06 0.70 7.64 -51.93 -0.40 0.30 16 46 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 47 H 0.13 3.30 6.17 -52.48 -0.32 2.98 16 48 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 49 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 50 H 0.09 1.63 6.27 -52.49 -0.33 1.30 16 LS Contribution 418.59 15.07 6.31 6.31 Total: -1.00 -32.47 418.59 -12.11 -44.58 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.45 Total: 8.99 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -6.38 Total: -27.37 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.21 Total: -32.04 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.76 Total: -13.74 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.47 -12.11 -44.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012506055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.971 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds