Wall clock time and date at job start Tue Mar 31 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47418 * 2 1 4 4 N 1.30112 * 124.95019 * 90.01989 * 3 2 1 5 5 C 1.35786 * 109.64233 * 179.97438 * 4 3 2 6 6 C 1.39733 * 133.59806 * 180.02562 * 5 4 3 7 7 C 1.36602 * 119.88530 * 180.02562 * 6 5 4 8 8 C 1.38774 * 120.67010 * 359.95784 * 7 6 5 9 9 C 1.37851 * 120.44908 * 359.97438 * 8 7 6 10 10 C 1.38832 * 119.69075 * 0.02704 * 9 8 7 11 11 N 1.36042 * 124.95006 * 270.30704 * 3 2 1 12 12 C 1.46495 * 126.35022 * 0.07670 * 11 3 2 13 13 C 1.52998 * 109.46998 * 270.11194 * 12 11 3 14 14 H 1.09004 * 109.47509 * 55.00157 * 13 12 11 15 15 O 1.42901 * 109.47100 * 295.00008 * 13 12 11 16 16 C 1.53004 * 109.47307 * 174.99842 * 13 12 11 17 17 O 1.42896 * 109.47573 * 184.99974 * 16 13 12 18 18 C 1.35675 * 117.00586 * 180.02562 * 17 16 13 19 19 C 1.39310 * 119.81075 * 359.71910 * 18 17 16 20 20 C 1.36447 * 120.18093 * 179.76273 * 19 18 17 21 21 C 1.40826 * 119.80860 * 0.51891 * 20 19 18 22 22 C 1.41222 * 120.17560 * 179.71935 * 21 20 19 23 23 H 1.07995 * 120.00316 * 24.56954 * 22 21 20 24 24 C 1.39889 * 119.99934 * 204.56904 * 22 21 20 25 25 N 1.30886 * 119.99935 * 17.93055 * 24 22 21 26 26 Si 1.86795 * 120.00161 * 197.93434 * 24 22 21 27 27 H 1.48499 * 109.47410 * 59.99950 * 26 24 22 28 28 H 1.48505 * 109.47353 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47102 * 299.99793 * 26 24 22 30 30 C 1.40827 * 119.64581 * 359.73873 * 21 20 19 31 31 C 1.36439 * 119.81278 * 359.97438 * 30 21 20 32 32 H 1.08995 * 109.47380 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47496 * 300.00193 * 1 2 3 34 34 H 1.09002 * 109.47054 * 60.00011 * 1 2 3 35 35 H 1.09005 * 109.46648 * 239.99624 * 2 1 3 36 36 H 1.09001 * 109.46835 * 120.00740 * 2 1 3 37 37 H 1.08006 * 120.06303 * 359.96320 * 6 5 4 38 38 H 1.08005 * 119.66597 * 179.97438 * 7 6 5 39 39 H 1.07998 * 119.77537 * 180.02562 * 8 7 6 40 40 H 1.08005 * 120.15635 * 179.97438 * 9 8 7 41 41 H 1.09002 * 109.47451 * 30.10942 * 12 11 3 42 42 H 1.08999 * 109.47400 * 150.11248 * 12 11 3 43 43 H 0.96702 * 113.99972 * 299.99573 * 15 13 12 44 44 H 1.08998 * 109.47393 * 305.00591 * 16 13 12 45 45 H 1.09001 * 109.46642 * 65.00169 * 16 13 12 46 46 H 1.07997 * 119.91082 * 0.02578 * 19 18 17 47 47 H 1.08001 * 120.09054 * 180.25568 * 20 19 18 48 48 H 0.96996 * 120.00058 * 180.02562 * 25 24 22 49 49 H 1.07998 * 120.09891 * 179.97438 * 30 21 20 50 50 H 1.07994 * 119.90979 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2812 2.1234 1.0665 5 6 2.7183 3.3580 0.7080 6 6 3.1181 4.4858 1.4296 7 6 3.5160 5.6120 0.7669 8 6 3.5290 5.6498 -0.6202 9 6 3.1401 4.5487 -1.3527 10 6 2.7325 3.3952 -0.6965 11 7 2.2866 2.1575 -1.1151 12 6 2.1215 1.7177 -2.5026 13 6 3.4225 1.0797 -2.9936 14 1 3.7126 0.2775 -2.3150 15 8 4.4536 2.0684 -3.0305 16 6 3.2127 0.5090 -4.3976 17 8 4.3902 -0.1879 -4.8095 18 6 4.3699 -0.7577 -6.0407 19 6 3.2303 -0.6506 -6.8347 20 6 3.2034 -1.2165 -8.0760 21 6 4.3280 -1.9197 -8.5492 22 6 4.3064 -2.5136 -9.8303 23 1 3.6451 -2.1292 -10.5927 24 6 5.1417 -3.5999 -10.1119 25 7 5.6735 -4.2873 -9.1333 26 14 5.4982 -4.0692 -11.8844 27 1 6.1480 -2.9279 -12.5776 28 1 6.4043 -5.2455 -11.9125 29 1 4.2263 -4.4070 -12.5725 30 6 5.4740 -2.0279 -7.7380 31 6 5.4868 -1.4512 -6.5016 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5140 0.8899 37 1 3.1116 4.4675 2.5095 38 1 3.8240 6.4819 1.3283 39 1 3.8467 6.5477 -1.1293 40 1 3.1517 4.5834 -2.4322 41 1 1.3147 0.9868 -2.5587 42 1 1.8785 2.5758 -3.1294 43 1 4.2628 2.8140 -3.6160 44 1 2.3678 -0.1795 -4.3875 45 1 3.0099 1.3227 -5.0939 46 1 2.3673 -0.1145 -6.4685 47 1 2.3206 -1.1290 -8.6920 48 1 6.2530 -5.0403 -9.3285 49 1 6.3404 -2.5659 -8.0935 50 1 6.3646 -1.5336 -5.8780 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012506057.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:11 Heat of formation + Delta-G solvation = -2.605438 kcal Electronic energy + Delta-G solvation = -31706.585112 eV Core-core repulsion = 27471.221939 eV Total energy + Delta-G solvation = -4235.363173 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.44367 -39.22665 -37.99272 -37.45779 -36.19868 -34.21505 -33.80896 -33.39669 -31.36354 -30.19516 -29.54181 -29.05146 -28.95605 -26.41314 -24.80253 -24.70452 -22.78378 -22.33820 -21.77441 -20.82891 -20.74597 -20.09769 -17.83163 -17.68816 -17.43068 -16.87755 -16.62707 -16.17815 -15.87467 -15.64955 -15.22884 -14.75240 -14.50549 -14.48175 -14.21227 -14.02288 -14.01654 -13.90330 -13.79637 -12.97321 -12.95938 -12.63310 -12.40356 -12.24457 -12.19909 -11.96208 -11.93404 -11.84665 -11.67148 -11.52558 -11.49158 -11.21333 -11.16093 -11.02428 -10.76612 -10.64506 -10.21075 -10.10501 -10.05496 -9.91703 -9.42254 -9.08804 -8.45177 -8.24730 -7.72907 -7.12304 -6.79113 -4.32850 0.77451 1.35922 2.24339 2.55955 2.71971 2.86840 3.04045 3.05974 3.16483 3.61366 3.73603 3.85620 3.89895 3.97218 4.17775 4.36091 4.54290 4.62827 4.67854 4.73779 4.79066 4.80708 4.86297 4.90772 5.00154 5.07789 5.25971 5.26358 5.34812 5.38891 5.44597 5.50808 5.58446 5.62472 5.70492 5.80057 5.94476 5.95325 6.13669 6.26438 6.33512 6.35650 6.63144 6.70356 6.88728 6.90183 7.03023 7.10785 7.35098 7.40313 7.47616 7.69719 7.71999 7.93011 8.12612 8.35092 8.56851 8.82755 8.90475 10.15399 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.019106 B = 0.001718 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.171507 B =16293.898154 C =17087.896686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C 0.288 3.712 4 N -0.494 5.494 5 C 0.044 3.956 6 C -0.067 4.067 7 C -0.130 4.130 8 C -0.106 4.106 9 C -0.101 4.101 10 C 0.059 3.941 11 N -0.478 5.478 12 C 0.079 3.921 13 C 0.095 3.905 14 H 0.111 0.889 15 O -0.538 6.538 16 C 0.041 3.959 17 O -0.315 6.315 18 C -0.013 4.013 19 C -0.167 4.167 20 C -0.200 4.200 21 C 0.089 3.911 22 C -0.463 4.463 23 H 0.077 0.923 24 C 0.075 3.925 25 N -0.797 5.797 26 Si 0.908 3.092 27 H -0.264 1.264 28 H -0.278 1.278 29 H -0.266 1.266 30 C -0.134 4.134 31 C -0.117 4.117 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.371 0.629 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.281 0.719 49 H 0.126 0.874 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 13.339 15.387 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C 0.023 3.977 4 N -0.213 5.213 5 C -0.074 4.074 6 C -0.087 4.087 7 C -0.151 4.151 8 C -0.126 4.126 9 C -0.122 4.122 10 C -0.049 4.049 11 N -0.168 5.168 12 C -0.044 4.044 13 C 0.034 3.966 14 H 0.129 0.871 15 O -0.343 6.343 16 C -0.036 4.036 17 O -0.231 6.231 18 C -0.056 4.056 19 C -0.185 4.185 20 C -0.219 4.219 21 C 0.087 3.913 22 C -0.493 4.493 23 H 0.095 0.905 24 C -0.142 4.142 25 N -0.423 5.423 26 Si 0.733 3.267 27 H -0.189 1.189 28 H -0.203 1.203 29 H -0.191 1.191 30 C -0.153 4.153 31 C -0.136 4.136 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.218 0.782 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.110 0.890 47 H 0.113 0.887 48 H 0.092 0.908 49 H 0.144 0.856 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.623 12.408 16.697 22.156 hybrid contribution -0.282 0.282 -2.252 2.287 sum -7.905 12.691 14.446 20.790 Atomic orbital electron populations 1.21742 0.93281 1.02859 1.02610 1.20224 0.96914 0.86869 1.05055 1.23614 0.97661 0.95820 0.80626 1.70403 1.20432 1.03327 1.27182 1.19041 1.04317 0.93591 0.90417 1.19982 0.98663 0.90421 0.99630 1.20611 1.02080 0.97983 0.94396 1.20859 1.00113 0.97622 0.93991 1.19907 1.02306 0.90746 0.99263 1.18797 1.03531 0.87543 0.95047 1.45057 1.54100 1.11006 1.06592 1.22476 0.99572 1.02053 0.80287 1.22337 0.86742 0.91247 0.96226 0.87076 1.86730 1.43834 1.34575 1.69120 1.22985 0.89664 0.96533 0.94460 1.85892 1.36079 1.68315 1.32808 1.18584 0.96913 1.04941 0.85202 1.20367 0.96189 1.05200 0.96787 1.20548 0.98239 1.07361 0.95796 1.17601 0.90094 0.90479 0.93123 1.19439 1.19960 1.12367 0.97507 0.90536 1.25892 0.93999 0.95191 0.99161 1.69820 1.24392 1.14538 1.33528 0.86369 0.79215 0.78535 0.82607 1.18851 1.20335 1.19064 1.20990 0.99143 1.01630 0.93546 1.19840 0.95842 1.00702 0.97177 0.90990 0.91697 0.92721 0.89582 0.87931 0.85622 0.85552 0.85410 0.86328 0.87485 0.88404 0.78234 0.92049 0.92591 0.89019 0.88726 0.90768 0.85619 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.05 -0.42 6.00 -27.88 -0.17 -0.59 16 3 C 0.29 3.31 7.11 -154.82 -1.10 2.21 16 4 N -0.49 -6.80 11.27 -8.24 -0.09 -6.90 16 5 C 0.04 0.59 7.23 -84.71 -0.61 -0.02 16 6 C -0.07 -0.74 10.05 -39.61 -0.40 -1.14 16 7 C -0.13 -1.18 9.96 -39.97 -0.40 -1.57 16 8 C -0.11 -0.94 10.03 -39.53 -0.40 -1.33 16 9 C -0.10 -1.01 10.05 -39.50 -0.40 -1.41 16 10 C 0.06 0.72 6.73 -83.99 -0.57 0.15 16 11 N -0.48 -5.18 2.76 -111.16 -0.31 -5.49 16 12 C 0.08 0.66 5.37 -4.05 -0.02 0.64 16 13 C 0.10 1.06 3.49 -26.73 -0.09 0.97 16 14 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 15 O -0.54 -6.82 13.11 -40.07 -0.53 -7.35 16 16 C 0.04 0.55 4.37 37.16 0.16 0.71 16 17 O -0.32 -6.07 10.09 -23.57 -0.24 -6.30 16 18 C -0.01 -0.30 6.71 -38.78 -0.26 -0.56 16 19 C -0.17 -3.55 8.96 -39.83 -0.36 -3.91 16 20 C -0.20 -4.72 9.74 -39.25 -0.38 -5.10 16 21 C 0.09 2.33 5.57 -106.81 -0.60 1.73 16 22 C -0.46 -12.00 9.04 -37.83 -0.34 -12.34 16 23 H 0.08 1.90 7.91 -52.49 -0.41 1.48 16 24 C 0.07 1.84 5.13 -17.34 -0.09 1.75 16 25 N -0.80 -20.25 10.96 55.54 0.61 -19.64 16 26 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 16 27 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 28 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 29 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 30 C -0.13 -3.42 8.64 -39.25 -0.34 -3.76 16 31 C -0.12 -2.77 9.92 -39.83 -0.40 -3.17 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.61 7.67 -51.93 -0.40 0.21 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 41 H 0.11 0.68 7.63 -51.93 -0.40 0.28 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.37 3.38 9.05 45.56 0.41 3.79 16 44 H 0.06 0.75 7.64 -51.93 -0.40 0.35 16 45 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 46 H 0.09 1.63 6.27 -52.49 -0.33 1.30 16 47 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 48 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 49 H 0.13 3.30 6.16 -52.49 -0.32 2.98 16 50 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 418.57 15.07 6.31 6.31 Total: -1.00 -32.37 418.57 -12.11 -44.47 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.45 Total: 8.98 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -6.38 Total: -27.36 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.21 Total: -32.03 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.76 Total: -13.65 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.37 -12.11 -44.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012506057.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.869 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds