Wall clock time and date at job start Tue Mar 31 2020 05:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47418 * 2 1 4 4 N 1.30112 * 124.95019 * 90.01989 * 3 2 1 5 5 C 1.35786 * 109.64233 * 179.97438 * 4 3 2 6 6 C 1.39733 * 133.59806 * 180.02562 * 5 4 3 7 7 C 1.36602 * 119.88530 * 180.02562 * 6 5 4 8 8 C 1.38774 * 120.67010 * 359.95784 * 7 6 5 9 9 C 1.37851 * 120.44908 * 359.97438 * 8 7 6 10 10 C 1.38832 * 119.69075 * 0.02704 * 9 8 7 11 11 N 1.36042 * 124.95006 * 270.30704 * 3 2 1 12 12 C 1.46495 * 126.35022 * 0.07670 * 11 3 2 13 13 C 1.52998 * 109.46998 * 270.11194 * 12 11 3 14 14 H 1.09004 * 109.47509 * 55.00157 * 13 12 11 15 15 O 1.42901 * 109.47100 * 295.00008 * 13 12 11 16 16 C 1.53004 * 109.47307 * 174.99842 * 13 12 11 17 17 O 1.42896 * 109.47573 * 184.99974 * 16 13 12 18 18 C 1.35675 * 117.00586 * 180.02562 * 17 16 13 19 19 C 1.39310 * 119.81075 * 359.71910 * 18 17 16 20 20 C 1.36447 * 120.18093 * 179.76273 * 19 18 17 21 21 C 1.40826 * 119.80860 * 0.51891 * 20 19 18 22 22 C 1.41222 * 120.17560 * 179.71935 * 21 20 19 23 23 H 1.07995 * 120.00316 * 24.56954 * 22 21 20 24 24 C 1.39889 * 119.99934 * 204.56904 * 22 21 20 25 25 N 1.30886 * 119.99935 * 17.93055 * 24 22 21 26 26 Si 1.86795 * 120.00161 * 197.93434 * 24 22 21 27 27 H 1.48499 * 109.47410 * 59.99950 * 26 24 22 28 28 H 1.48505 * 109.47353 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47102 * 299.99793 * 26 24 22 30 30 C 1.40827 * 119.64581 * 359.73873 * 21 20 19 31 31 C 1.36439 * 119.81278 * 359.97438 * 30 21 20 32 32 H 1.08995 * 109.47380 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47496 * 300.00193 * 1 2 3 34 34 H 1.09002 * 109.47054 * 60.00011 * 1 2 3 35 35 H 1.09005 * 109.46648 * 239.99624 * 2 1 3 36 36 H 1.09001 * 109.46835 * 120.00740 * 2 1 3 37 37 H 1.08006 * 120.06303 * 359.96320 * 6 5 4 38 38 H 1.08005 * 119.66597 * 179.97438 * 7 6 5 39 39 H 1.07998 * 119.77537 * 180.02562 * 8 7 6 40 40 H 1.08005 * 120.15635 * 179.97438 * 9 8 7 41 41 H 1.09002 * 109.47451 * 30.10942 * 12 11 3 42 42 H 1.08999 * 109.47400 * 150.11248 * 12 11 3 43 43 H 0.96702 * 113.99972 * 299.99573 * 15 13 12 44 44 H 1.08998 * 109.47393 * 305.00591 * 16 13 12 45 45 H 1.09001 * 109.46642 * 65.00169 * 16 13 12 46 46 H 1.07997 * 119.91082 * 0.02578 * 19 18 17 47 47 H 1.08001 * 120.09054 * 180.25568 * 20 19 18 48 48 H 0.96996 * 120.00058 * 180.02562 * 25 24 22 49 49 H 1.07998 * 120.09891 * 179.97438 * 30 21 20 50 50 H 1.07994 * 119.90979 * 179.97438 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2812 2.1234 1.0665 5 6 2.7183 3.3580 0.7080 6 6 3.1181 4.4858 1.4296 7 6 3.5160 5.6120 0.7669 8 6 3.5290 5.6498 -0.6202 9 6 3.1401 4.5487 -1.3527 10 6 2.7325 3.3952 -0.6965 11 7 2.2866 2.1575 -1.1151 12 6 2.1215 1.7177 -2.5026 13 6 3.4225 1.0797 -2.9936 14 1 3.7126 0.2775 -2.3150 15 8 4.4536 2.0684 -3.0305 16 6 3.2127 0.5090 -4.3976 17 8 4.3902 -0.1879 -4.8095 18 6 4.3699 -0.7577 -6.0407 19 6 3.2303 -0.6506 -6.8347 20 6 3.2034 -1.2165 -8.0760 21 6 4.3280 -1.9197 -8.5492 22 6 4.3064 -2.5136 -9.8303 23 1 3.6451 -2.1292 -10.5927 24 6 5.1417 -3.5999 -10.1119 25 7 5.6735 -4.2873 -9.1333 26 14 5.4982 -4.0692 -11.8844 27 1 6.1480 -2.9279 -12.5776 28 1 6.4043 -5.2455 -11.9125 29 1 4.2263 -4.4070 -12.5725 30 6 5.4740 -2.0279 -7.7380 31 6 5.4868 -1.4512 -6.5016 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5140 0.8899 37 1 3.1116 4.4675 2.5095 38 1 3.8240 6.4819 1.3283 39 1 3.8467 6.5477 -1.1293 40 1 3.1517 4.5834 -2.4322 41 1 1.3147 0.9868 -2.5587 42 1 1.8785 2.5758 -3.1294 43 1 4.2628 2.8140 -3.6160 44 1 2.3678 -0.1795 -4.3875 45 1 3.0099 1.3227 -5.0939 46 1 2.3673 -0.1145 -6.4685 47 1 2.3206 -1.1290 -8.6920 48 1 6.2530 -5.0403 -9.3285 49 1 6.3404 -2.5659 -8.0935 50 1 6.3646 -1.5336 -5.8780 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012506057.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:10 Heat of formation + Delta-G solvation = -20.525829 kcal Electronic energy + Delta-G solvation = -31707.362198 eV Core-core repulsion = 27471.221939 eV Total energy + Delta-G solvation = -4236.140260 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.22161 -40.67146 -39.09314 -38.35904 -37.67532 -35.19292 -35.03251 -34.42826 -32.32482 -31.61963 -30.99523 -30.50202 -29.70349 -27.50245 -26.38546 -25.42042 -23.88586 -23.11069 -22.67265 -22.43716 -22.26885 -20.90358 -19.26316 -18.94112 -18.43058 -18.14703 -17.50186 -17.12468 -17.10235 -16.71873 -16.38214 -15.84422 -15.71664 -15.63662 -15.27911 -15.07397 -14.90349 -14.78846 -14.63485 -14.55427 -14.08168 -13.93615 -13.60216 -13.59380 -13.29108 -13.09149 -12.85265 -12.79067 -12.67284 -12.61041 -12.56729 -12.39928 -12.34396 -12.10808 -12.05614 -11.73699 -11.66742 -11.58578 -11.19593 -11.03454 -10.92195 -10.87443 -9.55992 -9.22273 -9.03251 -8.93007 -8.59928 -6.22863 0.01659 0.59635 0.95310 1.03100 1.39677 1.48517 1.50292 1.54404 1.76928 2.22216 2.48406 2.72682 2.94943 3.14784 3.23829 3.42464 3.65833 3.70144 3.72225 3.80309 3.97864 4.07642 4.13861 4.17047 4.26132 4.27662 4.31576 4.36166 4.42727 4.43271 4.52663 4.58055 4.69182 4.76506 4.84486 4.87780 4.97154 5.03207 5.06807 5.21949 5.23985 5.27239 5.27964 5.51106 5.58837 5.60274 5.61442 5.63891 5.87736 6.00492 6.05912 6.15050 6.26395 6.55918 6.65615 6.80963 6.90385 6.95146 7.09962 8.36272 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.019106 B = 0.001718 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.171507 B =16293.898154 C =17087.896686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C 0.281 3.719 4 N -0.533 5.533 5 C 0.007 3.993 6 C -0.091 4.091 7 C -0.126 4.126 8 C -0.106 4.106 9 C -0.110 4.110 10 C 0.042 3.958 11 N -0.478 5.478 12 C 0.084 3.916 13 C 0.106 3.894 14 H 0.093 0.907 15 O -0.562 6.562 16 C 0.032 3.968 17 O -0.332 6.332 18 C 0.002 3.998 19 C -0.161 4.161 20 C -0.206 4.206 21 C 0.054 3.946 22 C -0.499 4.499 23 H 0.077 0.923 24 C 0.033 3.967 25 N -0.831 5.831 26 Si 0.980 3.020 27 H -0.262 1.262 28 H -0.271 1.271 29 H -0.258 1.258 30 C -0.154 4.154 31 C -0.136 4.136 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.386 0.614 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.136 0.864 47 H 0.108 0.892 48 H 0.287 0.713 49 H 0.107 0.893 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 14.896 14.676 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 C 0.015 3.985 4 N -0.254 5.254 5 C -0.111 4.111 6 C -0.110 4.110 7 C -0.146 4.146 8 C -0.126 4.126 9 C -0.130 4.130 10 C -0.067 4.067 11 N -0.167 5.167 12 C -0.038 4.038 13 C 0.046 3.954 14 H 0.111 0.889 15 O -0.369 6.369 16 C -0.044 4.044 17 O -0.248 6.248 18 C -0.042 4.042 19 C -0.180 4.180 20 C -0.226 4.226 21 C 0.052 3.948 22 C -0.528 4.528 23 H 0.095 0.905 24 C -0.181 4.181 25 N -0.458 5.458 26 Si 0.801 3.199 27 H -0.186 1.186 28 H -0.195 1.195 29 H -0.183 1.183 30 C -0.174 4.174 31 C -0.155 4.155 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.146 0.854 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.235 0.765 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.154 0.846 47 H 0.126 0.874 48 H 0.097 0.903 49 H 0.125 0.875 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.074 13.991 15.997 23.108 hybrid contribution 0.143 -0.037 -1.812 1.818 sum -8.931 13.955 14.185 21.811 Atomic orbital electron populations 1.21705 0.92053 1.03841 1.02240 1.20368 0.97858 0.85195 1.05606 1.24166 0.97039 0.96695 0.80588 1.70346 1.22000 1.04229 1.28789 1.19505 1.05633 0.94111 0.91811 1.20245 0.99790 0.90909 1.00098 1.20984 1.00581 0.98021 0.94983 1.21300 0.98902 0.98355 0.94005 1.20278 1.01901 0.90288 1.00561 1.19119 1.04132 0.88581 0.94839 1.45145 1.53780 1.10576 1.07191 1.22584 0.98411 1.03522 0.79316 1.22204 0.87839 0.90769 0.94623 0.88902 1.86698 1.44956 1.35443 1.69793 1.23391 0.88127 0.97073 0.95839 1.85878 1.39342 1.68490 1.31103 1.18614 0.96163 1.03235 0.86139 1.20713 0.97282 1.04401 0.95581 1.20822 0.97928 1.06900 0.96958 1.17959 0.91127 0.91912 0.93824 1.19694 1.21590 1.13583 0.97968 0.90456 1.26735 0.93309 0.94683 1.03400 1.69886 1.25135 1.15164 1.35636 0.85276 0.79241 0.78279 0.77058 1.18615 1.19509 1.18269 1.20885 0.98908 1.02900 0.94699 1.19994 0.97184 1.01410 0.96887 0.89269 0.93022 0.92120 0.88238 0.88146 0.85374 0.82834 0.82424 0.84096 0.85015 0.85974 0.76506 0.90088 0.90532 0.84627 0.87423 0.90264 0.87524 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.89 71.98 0.71 -0.95 16 2 C -0.05 -0.78 6.00 29.85 0.18 -0.60 16 3 C 0.28 6.32 7.11 137.92 0.98 7.30 16 4 N -0.53 -15.08 11.27 -179.97 -2.03 -17.11 16 5 C 0.01 0.18 7.23 39.44 0.29 0.47 16 6 C -0.09 -2.01 10.05 22.25 0.22 -1.79 16 7 C -0.13 -2.07 9.96 22.02 0.22 -1.85 16 8 C -0.11 -1.61 10.03 22.31 0.22 -1.39 16 9 C -0.11 -1.94 10.05 22.32 0.22 -1.72 16 10 C 0.04 0.96 6.73 38.86 0.26 1.22 16 11 N -0.48 -9.60 2.76 -505.61 -1.39 -11.00 16 12 C 0.08 1.12 5.37 86.38 0.46 1.59 16 13 C 0.11 2.09 3.49 30.59 0.11 2.19 16 14 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 15 O -0.56 -13.01 13.11 -144.35 -1.89 -14.91 16 16 C 0.03 0.73 4.37 71.98 0.31 1.05 16 17 O -0.33 -12.04 10.09 -85.29 -0.86 -12.90 16 18 C 0.00 0.10 6.71 22.79 0.15 0.25 16 19 C -0.16 -6.45 8.96 22.11 0.20 -6.25 16 20 C -0.21 -9.55 9.74 22.48 0.22 -9.33 16 21 C 0.05 2.86 5.57 -21.28 -0.12 2.74 16 22 C -0.50 -26.39 9.04 23.40 0.21 -26.18 16 23 H 0.08 3.90 7.91 -2.91 -0.02 3.88 16 24 C 0.03 1.63 5.13 85.23 0.44 2.07 16 25 N -0.83 -43.51 10.96 21.82 0.24 -43.28 16 26 Si 0.98 37.82 29.59 68.60 2.03 39.85 16 27 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 28 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 29 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 30 C -0.15 -8.16 8.64 22.48 0.19 -7.96 16 31 C -0.14 -6.52 9.92 22.11 0.22 -6.31 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 35 H 0.10 1.22 7.67 -2.38 -0.02 1.20 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 40 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.13 1.13 7.63 -2.39 -0.02 1.11 16 42 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.39 5.89 9.05 -74.06 -0.67 5.22 16 44 H 0.08 1.59 7.64 -2.39 -0.02 1.57 16 45 H 0.08 1.49 7.66 -2.39 -0.02 1.47 16 46 H 0.14 4.15 6.27 -2.91 -0.02 4.13 16 47 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 48 H 0.29 13.65 8.30 -92.71 -0.77 12.89 16 49 H 0.11 5.91 6.16 -2.91 -0.02 5.90 16 50 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -73.68 418.57 2.10 -71.58 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.29 Total: 33.21 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 5.71 Total: -45.45 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -3.18 Total: -71.38 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -2.75 Total: -27.81 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -73.68 2.10 -71.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012506057.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.055 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds