Wall clock time and date at job start Tue Mar 31 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34890 * 119.24377 * 2 1 4 4 O 1.21677 * 120.89772 * 0.25481 * 3 2 1 5 5 C 1.47343 * 118.20858 * 180.27761 * 3 2 1 6 6 C 1.38837 * 121.44988 * 179.97438 * 5 3 2 7 7 C 1.40979 * 120.00458 * 350.98844 * 6 5 3 8 8 C 1.38436 * 126.95893 * 314.65514 * 7 6 5 9 9 N 1.34516 * 109.53954 * 179.97438 * 8 7 6 10 10 C 1.46501 * 124.60064 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47422 * 265.02409 * 10 9 8 12 12 H 1.07998 * 119.99622 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00241 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00266 * 180.02562 * 13 11 10 15 15 Si 1.86808 * 119.99816 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46872 * 90.00036 * 15 13 11 17 17 H 1.48503 * 109.47061 * 209.99736 * 15 13 11 18 18 H 1.48494 * 109.46996 * 329.99821 * 15 13 11 19 19 C 1.38094 * 110.79461 * 0.02562 * 9 8 7 20 20 C 1.39127 * 132.97123 * 180.02562 * 19 9 8 21 21 C 1.37806 * 119.96106 * 179.97438 * 20 19 9 22 22 C 1.38691 * 120.62467 * 0.02562 * 21 20 19 23 23 C 1.37844 * 120.25630 * 359.97438 * 22 21 20 24 24 C 1.39128 * 119.67780 * 359.69578 * 23 22 21 25 25 C 1.47325 * 117.09260 * 359.97438 * 5 3 2 26 26 O 1.21678 * 120.89515 * 180.02562 * 25 5 3 27 27 N 1.34899 * 118.21543 * 0.02562 * 25 5 3 28 28 C 1.46497 * 119.24799 * 179.97438 * 27 25 5 29 29 C 1.34041 * 121.50758 * 359.97438 * 27 25 5 30 30 O 1.21534 * 118.26754 * 180.02562 * 29 27 25 31 31 H 1.09000 * 109.47088 * 179.72699 * 1 2 3 32 32 H 1.08995 * 109.47030 * 299.73235 * 1 2 3 33 33 H 1.09007 * 109.46965 * 59.73019 * 1 2 3 34 34 H 1.08002 * 119.99837 * 170.99215 * 6 5 3 35 35 H 1.08001 * 125.22435 * 359.97438 * 8 7 6 36 36 H 1.08995 * 109.47607 * 25.03218 * 10 9 8 37 37 H 1.09010 * 109.46783 * 145.02795 * 10 9 8 38 38 H 0.97000 * 120.00174 * 180.02562 * 14 13 11 39 39 H 1.08001 * 120.01663 * 359.97283 * 20 19 9 40 40 H 1.07992 * 119.68652 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.87357 * 179.97438 * 22 21 20 42 42 H 1.08006 * 120.16115 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.47226 * 180.02562 * 28 27 25 44 44 H 1.09004 * 109.47119 * 300.01780 * 28 27 25 45 45 H 1.09001 * 109.47186 * 60.01605 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1240 1.1770 0.0000 4 8 1.5182 2.2322 0.0046 5 6 3.5972 1.1504 -0.0063 6 6 4.3429 2.3215 -0.0072 7 6 3.7036 3.5641 -0.1933 8 6 2.7410 3.8715 -1.1397 9 7 2.3716 5.1578 -1.0043 10 6 1.3714 5.8284 -1.8386 11 6 2.0611 6.5497 -2.9679 12 1 3.1369 6.5121 -3.0555 13 6 1.3187 7.2568 -3.8897 14 7 1.9205 7.8859 -4.8754 15 14 -0.5421 7.3213 -3.7385 16 1 -0.9307 8.4856 -2.9025 17 1 -1.1440 7.4588 -5.0891 18 1 -1.0308 6.0710 -3.1037 19 6 3.0640 5.7608 0.0272 20 6 3.0463 7.0473 0.5567 21 6 3.8695 7.3675 1.6145 22 6 4.7203 6.4179 2.1603 23 6 4.7520 5.1381 1.6492 24 6 3.9209 4.8003 0.5859 25 6 4.2443 -0.1731 -0.0116 26 8 5.4568 -0.2757 -0.0164 27 7 3.4566 -1.2683 -0.0109 28 6 4.0763 -2.5957 -0.0166 29 6 2.1199 -1.1696 -0.0050 30 8 1.4671 -2.1948 -0.0042 31 1 -0.3633 -1.0277 -0.0049 32 1 -0.3633 0.5096 0.8923 33 1 -0.3633 0.5181 -0.8876 34 1 5.4127 2.2806 0.1346 35 1 2.3473 3.1841 -1.8737 36 1 0.6834 5.0881 -2.2468 37 1 0.8163 6.5460 -1.2344 38 1 1.3982 8.3837 -5.5237 39 1 2.3879 7.7944 0.1390 40 1 3.8524 8.3675 2.0218 41 1 5.3606 6.6822 2.9890 42 1 5.4155 4.4000 2.0752 43 1 3.2989 -3.3596 -0.0156 44 1 4.6921 -2.7053 -0.9093 45 1 4.6991 -2.7098 0.8706 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012542703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:05 Heat of formation + Delta-G solvation = 9.673705 kcal Electronic energy + Delta-G solvation = -33088.070901 eV Core-core repulsion = 28651.981186 eV Total energy + Delta-G solvation = -4436.089715 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.39086 -41.15299 -39.45544 -39.06978 -36.86358 -35.46010 -35.38642 -34.59752 -33.11259 -31.52200 -30.06790 -29.23994 -28.54431 -27.25645 -26.91526 -25.15081 -23.26580 -22.99445 -22.83235 -21.83018 -20.90894 -19.72827 -19.08263 -17.52378 -17.40431 -17.34764 -17.14727 -16.38553 -16.04635 -15.78196 -15.42484 -15.36240 -15.18914 -14.90089 -14.63092 -14.20537 -14.14428 -13.92727 -13.63181 -13.52625 -13.11842 -13.03532 -12.98059 -12.74356 -12.61758 -12.51359 -12.29225 -12.15530 -11.74828 -11.51638 -11.26664 -11.08968 -10.97669 -10.81485 -10.67226 -10.28187 -10.07010 -10.00697 -9.86210 -9.77798 -9.65834 -8.97754 -8.93276 -7.85198 -7.08987 -6.44849 -4.51615 0.22370 1.47499 1.83753 1.87687 2.08488 2.13133 2.82246 3.01606 3.05236 3.08742 3.10778 3.35840 3.52253 3.92612 4.05058 4.21247 4.68506 4.82667 4.87764 4.99487 5.06252 5.08201 5.14193 5.15759 5.24829 5.25359 5.28831 5.33415 5.42445 5.48806 5.51967 5.59374 5.76240 5.82007 5.87858 6.01391 6.14621 6.21659 6.24654 6.27638 6.42447 6.72378 6.84701 6.95309 7.04580 7.11586 7.15490 7.24616 7.48345 7.55246 7.57563 7.84844 8.07124 8.57476 9.09221 10.66861 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.003328 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.293204 B = 8410.986163 C =10168.894486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.565 5.565 3 C 0.567 3.433 4 O -0.480 6.480 5 C -0.356 4.356 6 C 0.212 3.788 7 C -0.279 4.279 8 C 0.228 3.772 9 N -0.417 5.417 10 C 0.199 3.801 11 C -0.555 4.555 12 H 0.084 0.916 13 C 0.084 3.916 14 N -0.879 5.879 15 Si 0.871 3.129 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.264 1.264 19 C 0.088 3.912 20 C -0.093 4.093 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.097 4.097 24 C -0.057 4.057 25 C 0.574 3.426 26 O -0.501 6.501 27 N -0.567 5.567 28 C 0.080 3.920 29 C 0.713 3.287 30 O -0.544 6.544 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.145 0.855 35 H 0.170 0.830 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.271 0.729 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 -12.773 11.772 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.310 5.310 3 C 0.361 3.639 4 O -0.353 6.353 5 C -0.363 4.363 6 C 0.191 3.809 7 C -0.285 4.285 8 C 0.084 3.916 9 N -0.088 5.088 10 C 0.080 3.920 11 C -0.592 4.592 12 H 0.102 0.898 13 C -0.122 4.122 14 N -0.515 5.515 15 Si 0.697 3.303 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.015 4.015 20 C -0.113 4.113 21 C -0.142 4.142 22 C -0.151 4.151 23 C -0.116 4.116 24 C -0.060 4.060 25 C 0.369 3.631 26 O -0.376 6.376 27 N -0.311 5.311 28 C -0.061 4.061 29 C 0.416 3.584 30 O -0.418 6.418 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.163 0.837 35 H 0.187 0.813 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.040 -12.406 11.405 16.884 hybrid contribution -1.065 0.102 -0.257 1.100 sum -0.025 -12.305 11.149 16.604 Atomic orbital electron populations 1.21928 0.75251 1.05109 1.03847 1.45999 1.10247 1.05848 1.68942 1.18404 0.87771 0.82647 0.75098 1.90907 1.69714 1.28499 1.46141 1.21469 0.91920 0.93183 1.29751 1.21243 0.98474 0.88272 0.72939 1.17884 1.09791 0.93723 1.07140 1.22467 0.88247 0.84915 0.96000 1.44202 1.31272 1.08669 1.24637 1.20309 0.86877 0.94105 0.90689 1.21124 0.96241 1.32863 1.08984 0.89839 1.24806 0.98704 0.94190 0.94510 1.69860 1.36351 1.31313 1.13986 0.86921 0.85352 0.79469 0.78543 1.19499 1.20321 1.18810 1.18252 0.96933 0.94587 0.91758 1.20248 1.00795 0.93425 0.96849 1.20716 0.97248 0.99348 0.96871 1.20837 1.00270 0.93273 1.00736 1.20290 0.98745 0.96527 0.96020 1.18805 0.98303 0.91372 0.97546 1.18348 0.86526 0.83669 0.74591 1.90831 1.12696 1.86722 1.47368 1.45885 1.05611 1.10534 1.69068 1.21923 0.99232 0.81286 1.03695 1.15433 0.81864 0.84199 0.76907 1.90928 1.64450 1.32878 1.53583 0.88146 0.90426 0.90274 0.83738 0.81303 0.93081 0.93741 0.91861 0.85670 0.86018 0.86303 0.86389 0.88064 0.90368 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 9.97 59.85 0.60 1.43 16 2 N -0.57 -7.23 2.95 -129.77 -0.38 -7.62 16 3 C 0.57 8.07 7.36 -12.51 -0.09 7.98 16 4 O -0.48 -7.80 12.22 5.21 0.06 -7.74 16 5 C -0.36 -4.88 6.02 -102.28 -0.62 -5.49 16 6 C 0.21 2.89 9.62 -38.32 -0.37 2.53 16 7 C -0.28 -4.51 4.95 -104.91 -0.52 -5.03 16 8 C 0.23 4.02 8.11 -16.30 -0.13 3.89 16 9 N -0.42 -8.21 2.70 -115.14 -0.31 -8.52 16 10 C 0.20 4.26 4.74 -5.19 -0.02 4.24 16 11 C -0.55 -14.14 9.94 -34.44 -0.34 -14.48 16 12 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 13 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 14 N -0.88 -24.68 13.96 55.43 0.77 -23.91 16 15 Si 0.87 18.96 27.47 -169.99 -4.67 14.29 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 18 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 19 C 0.09 1.65 6.78 -83.93 -0.57 1.08 16 20 C -0.09 -1.61 9.95 -39.41 -0.39 -2.00 16 21 C -0.12 -1.76 10.01 -39.57 -0.40 -2.15 16 22 C -0.13 -1.77 10.03 -39.56 -0.40 -2.16 16 23 C -0.10 -1.40 10.09 -39.40 -0.40 -1.79 16 24 C -0.06 -0.96 6.34 -104.91 -0.67 -1.63 16 25 C 0.57 7.72 7.64 -12.51 -0.10 7.62 16 26 O -0.50 -7.44 16.58 5.21 0.09 -7.36 16 27 N -0.57 -6.94 2.94 -129.78 -0.38 -7.32 16 28 C 0.08 0.74 9.97 59.85 0.60 1.34 16 29 C 0.71 9.25 8.07 -88.23 -0.71 8.53 16 30 O -0.54 -7.60 14.45 5.34 0.08 -7.52 16 31 H 0.10 0.97 6.73 -51.93 -0.35 0.62 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.15 1.69 7.79 -52.49 -0.41 1.28 16 35 H 0.17 2.74 7.49 -52.49 -0.39 2.35 16 36 H 0.05 1.06 7.16 -51.93 -0.37 0.69 16 37 H 0.04 0.93 7.57 -51.92 -0.39 0.53 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 41 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 42 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 43 H 0.10 0.89 6.73 -51.93 -0.35 0.54 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -30.83 383.71 -8.82 -39.66 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.24 Total: 4.29 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -4.62 Total: 5.96 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.30 Total: -47.36 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.23 Total: -22.62 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.67 Total: 14.29 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.83 -8.82 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012542703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.330 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds