Wall clock time and date at job start Tue Mar 31 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34890 * 119.24377 * 2 1 4 4 O 1.21677 * 120.89772 * 0.25481 * 3 2 1 5 5 C 1.47343 * 118.20858 * 180.27761 * 3 2 1 6 6 C 1.38837 * 121.44988 * 179.97438 * 5 3 2 7 7 C 1.40979 * 120.00458 * 350.98844 * 6 5 3 8 8 C 1.38436 * 126.95893 * 314.65514 * 7 6 5 9 9 N 1.34516 * 109.53954 * 179.97438 * 8 7 6 10 10 C 1.46501 * 124.60064 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47422 * 265.02409 * 10 9 8 12 12 H 1.07998 * 119.99622 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00241 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00266 * 180.02562 * 13 11 10 15 15 Si 1.86808 * 119.99816 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46872 * 90.00036 * 15 13 11 17 17 H 1.48503 * 109.47061 * 209.99736 * 15 13 11 18 18 H 1.48494 * 109.46996 * 329.99821 * 15 13 11 19 19 C 1.38094 * 110.79461 * 0.02562 * 9 8 7 20 20 C 1.39127 * 132.97123 * 180.02562 * 19 9 8 21 21 C 1.37806 * 119.96106 * 179.97438 * 20 19 9 22 22 C 1.38691 * 120.62467 * 0.02562 * 21 20 19 23 23 C 1.37844 * 120.25630 * 359.97438 * 22 21 20 24 24 C 1.39128 * 119.67780 * 359.69578 * 23 22 21 25 25 C 1.47325 * 117.09260 * 359.97438 * 5 3 2 26 26 O 1.21678 * 120.89515 * 180.02562 * 25 5 3 27 27 N 1.34899 * 118.21543 * 0.02562 * 25 5 3 28 28 C 1.46497 * 119.24799 * 179.97438 * 27 25 5 29 29 C 1.34041 * 121.50758 * 359.97438 * 27 25 5 30 30 O 1.21534 * 118.26754 * 180.02562 * 29 27 25 31 31 H 1.09000 * 109.47088 * 179.72699 * 1 2 3 32 32 H 1.08995 * 109.47030 * 299.73235 * 1 2 3 33 33 H 1.09007 * 109.46965 * 59.73019 * 1 2 3 34 34 H 1.08002 * 119.99837 * 170.99215 * 6 5 3 35 35 H 1.08001 * 125.22435 * 359.97438 * 8 7 6 36 36 H 1.08995 * 109.47607 * 25.03218 * 10 9 8 37 37 H 1.09010 * 109.46783 * 145.02795 * 10 9 8 38 38 H 0.97000 * 120.00174 * 180.02562 * 14 13 11 39 39 H 1.08001 * 120.01663 * 359.97283 * 20 19 9 40 40 H 1.07992 * 119.68652 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.87357 * 179.97438 * 22 21 20 42 42 H 1.08006 * 120.16115 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.47226 * 180.02562 * 28 27 25 44 44 H 1.09004 * 109.47119 * 300.01780 * 28 27 25 45 45 H 1.09001 * 109.47186 * 60.01605 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1240 1.1770 0.0000 4 8 1.5182 2.2322 0.0046 5 6 3.5972 1.1504 -0.0063 6 6 4.3429 2.3215 -0.0072 7 6 3.7036 3.5641 -0.1933 8 6 2.7410 3.8715 -1.1397 9 7 2.3716 5.1578 -1.0043 10 6 1.3714 5.8284 -1.8386 11 6 2.0611 6.5497 -2.9679 12 1 3.1369 6.5121 -3.0555 13 6 1.3187 7.2568 -3.8897 14 7 1.9205 7.8859 -4.8754 15 14 -0.5421 7.3213 -3.7385 16 1 -0.9307 8.4856 -2.9025 17 1 -1.1440 7.4588 -5.0891 18 1 -1.0308 6.0710 -3.1037 19 6 3.0640 5.7608 0.0272 20 6 3.0463 7.0473 0.5567 21 6 3.8695 7.3675 1.6145 22 6 4.7203 6.4179 2.1603 23 6 4.7520 5.1381 1.6492 24 6 3.9209 4.8003 0.5859 25 6 4.2443 -0.1731 -0.0116 26 8 5.4568 -0.2757 -0.0164 27 7 3.4566 -1.2683 -0.0109 28 6 4.0763 -2.5957 -0.0166 29 6 2.1199 -1.1696 -0.0050 30 8 1.4671 -2.1948 -0.0042 31 1 -0.3633 -1.0277 -0.0049 32 1 -0.3633 0.5096 0.8923 33 1 -0.3633 0.5181 -0.8876 34 1 5.4127 2.2806 0.1346 35 1 2.3473 3.1841 -1.8737 36 1 0.6834 5.0881 -2.2468 37 1 0.8163 6.5460 -1.2344 38 1 1.3982 8.3837 -5.5237 39 1 2.3879 7.7944 0.1390 40 1 3.8524 8.3675 2.0218 41 1 5.3606 6.6822 2.9890 42 1 5.4155 4.4000 2.0752 43 1 3.2989 -3.3596 -0.0156 44 1 4.6921 -2.7053 -0.9093 45 1 4.6991 -2.7098 0.8706 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012542703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:04 Heat of formation + Delta-G solvation = -6.944100 kcal Electronic energy + Delta-G solvation = -33088.791503 eV Core-core repulsion = 28651.981186 eV Total energy + Delta-G solvation = -4436.810317 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.44541 -42.41967 -40.54977 -40.18191 -38.07809 -36.53788 -36.44654 -35.93124 -34.87959 -32.86903 -31.42390 -30.25681 -29.88769 -28.50657 -27.81018 -26.43273 -24.75810 -24.07604 -23.95794 -23.06369 -22.21796 -20.89827 -20.22553 -19.29796 -18.57229 -18.43742 -18.30647 -17.71311 -17.29635 -16.79536 -16.51577 -16.45667 -16.38838 -16.23993 -15.96671 -15.46883 -15.28289 -15.23638 -14.93491 -14.83685 -14.52719 -14.18098 -14.02480 -13.90326 -13.73005 -13.56789 -13.39510 -13.31337 -13.28213 -12.69450 -12.66528 -12.50779 -12.25540 -12.14303 -11.90356 -11.86024 -11.59633 -11.13750 -11.11354 -10.95915 -10.95315 -10.76034 -10.13348 -9.11076 -8.46609 -8.34058 -6.58281 -0.91446 0.27901 0.71772 0.88076 0.95951 1.03287 1.30475 1.31248 1.40749 1.73614 1.83549 1.99921 2.20274 2.44207 2.83507 2.86332 3.01777 3.57873 3.68306 3.76447 3.91266 4.06435 4.20004 4.28249 4.31398 4.33137 4.36875 4.39581 4.42519 4.47975 4.48878 4.51376 4.64143 4.67716 4.77780 4.81665 4.82929 4.89715 5.03864 5.15199 5.15718 5.34408 5.57290 5.69048 5.74655 5.89687 5.93298 6.11275 6.17830 6.30154 6.31008 6.39834 6.47783 6.79111 7.07054 8.69580 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.003328 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.293204 B = 8410.986163 C =10168.894486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.566 5.566 3 C 0.567 3.433 4 O -0.500 6.500 5 C -0.349 4.349 6 C 0.217 3.783 7 C -0.269 4.269 8 C 0.201 3.799 9 N -0.437 5.437 10 C 0.211 3.789 11 C -0.554 4.554 12 H 0.033 0.967 13 C 0.027 3.973 14 N -0.932 5.932 15 Si 0.943 3.057 16 H -0.261 1.261 17 H -0.277 1.277 18 H -0.242 1.242 19 C 0.055 3.945 20 C -0.127 4.127 21 C -0.114 4.114 22 C -0.127 4.127 23 C -0.096 4.096 24 C -0.075 4.075 25 C 0.580 3.420 26 O -0.512 6.512 27 N -0.566 5.566 28 C 0.075 3.925 29 C 0.714 3.286 30 O -0.552 6.552 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.274 0.726 39 H 0.111 0.889 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.149 0.851 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.403 -14.222 14.102 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.310 5.310 3 C 0.361 3.639 4 O -0.374 6.374 5 C -0.357 4.357 6 C 0.196 3.804 7 C -0.275 4.275 8 C 0.060 3.940 9 N -0.110 5.110 10 C 0.091 3.909 11 C -0.592 4.592 12 H 0.052 0.948 13 C -0.174 4.174 14 N -0.570 5.570 15 Si 0.764 3.236 16 H -0.185 1.185 17 H -0.202 1.202 18 H -0.166 1.166 19 C -0.047 4.047 20 C -0.147 4.147 21 C -0.133 4.133 22 C -0.145 4.145 23 C -0.114 4.114 24 C -0.078 4.078 25 C 0.375 3.625 26 O -0.388 6.388 27 N -0.310 5.310 28 C -0.065 4.065 29 C 0.417 3.583 30 O -0.427 6.427 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.187 0.813 35 H 0.190 0.810 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.129 0.871 40 H 0.168 0.832 41 H 0.177 0.823 42 H 0.166 0.834 43 H 0.125 0.875 44 H 0.106 0.894 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.074 -13.916 13.759 19.599 hybrid contribution -0.914 0.449 -0.888 1.351 sum 0.160 -13.468 12.871 18.630 Atomic orbital electron populations 1.22076 0.73990 1.05807 1.04419 1.46065 1.11156 1.05423 1.68367 1.18506 0.87999 0.82699 0.74700 1.90921 1.70158 1.29306 1.47048 1.21586 0.91819 0.93623 1.28647 1.21408 0.99465 0.87170 0.72383 1.18033 1.08828 0.94416 1.06256 1.22633 0.89560 0.84550 0.97232 1.44036 1.32146 1.09374 1.25417 1.19971 0.87213 0.94078 0.89667 1.21231 0.94167 1.33208 1.10565 0.94824 1.25744 1.04269 0.93521 0.93829 1.70014 1.38646 1.32921 1.15377 0.85791 0.78457 0.80592 0.78721 1.18519 1.20176 1.16556 1.18680 0.97977 0.95766 0.92297 1.20409 1.02526 0.93013 0.98763 1.21115 0.95848 1.00970 0.95327 1.21306 0.99740 0.92408 1.01071 1.20731 0.98111 0.97771 0.94826 1.19118 0.98883 0.91214 0.98620 1.18195 0.86299 0.83711 0.74317 1.90832 1.13100 1.86897 1.47960 1.45959 1.05320 1.11300 1.68387 1.22155 0.99596 0.79859 1.04875 1.15472 0.82053 0.84025 0.76740 1.90927 1.64667 1.33084 1.54011 0.87308 0.89767 0.89881 0.81327 0.81044 0.92242 0.93173 0.91686 0.87078 0.83249 0.82343 0.83365 0.87518 0.89389 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.51 9.97 127.77 1.27 2.79 16 2 N -0.57 -13.73 2.95 -801.32 -2.36 -16.09 16 3 C 0.57 15.60 7.36 86.62 0.64 16.23 16 4 O -0.50 -16.10 12.22 -4.27 -0.05 -16.15 16 5 C -0.35 -9.07 6.02 -18.35 -0.11 -9.18 16 6 C 0.22 5.60 9.62 23.09 0.22 5.82 16 7 C -0.27 -8.61 4.95 -20.05 -0.10 -8.71 16 8 C 0.20 7.31 8.11 84.33 0.68 8.00 16 9 N -0.44 -17.89 2.70 -518.19 -1.40 -19.29 16 10 C 0.21 9.32 4.74 85.63 0.41 9.72 16 11 C -0.55 -29.77 9.94 25.60 0.25 -29.52 16 12 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16 13 C 0.03 1.46 5.47 84.65 0.46 1.92 16 14 N -0.93 -54.63 13.96 21.45 0.30 -54.33 16 15 Si 0.94 39.55 27.47 68.60 1.88 41.43 16 16 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 17 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 19 C 0.06 2.14 6.78 38.88 0.26 2.40 16 20 C -0.13 -4.49 9.95 22.38 0.22 -4.26 16 21 C -0.11 -3.08 10.01 22.28 0.22 -2.86 16 22 C -0.13 -2.99 10.03 22.28 0.22 -2.77 16 23 C -0.10 -2.52 10.09 22.39 0.23 -2.30 16 24 C -0.08 -2.50 6.34 -20.05 -0.13 -2.63 16 25 C 0.58 14.44 7.64 86.61 0.66 15.10 16 26 O -0.51 -14.02 16.58 -4.28 -0.07 -14.09 16 27 N -0.57 -12.71 2.94 -801.35 -2.36 -15.07 16 28 C 0.07 1.22 9.97 127.77 1.27 2.49 16 29 C 0.71 17.29 8.07 179.51 1.45 18.74 16 30 O -0.55 -14.39 14.45 -3.82 -0.06 -14.45 16 31 H 0.11 1.94 6.73 -2.39 -0.02 1.93 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.17 3.53 7.79 -2.91 -0.02 3.51 16 35 H 0.17 5.81 7.49 -2.91 -0.02 5.79 16 36 H 0.06 2.49 7.16 -2.39 -0.02 2.48 16 37 H 0.05 2.13 7.57 -2.38 -0.02 2.12 16 38 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.11 4.06 8.06 -2.91 -0.02 4.03 16 40 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 41 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 42 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.11 1.64 6.73 -2.39 -0.02 1.62 16 44 H 0.09 1.27 8.14 -2.38 -0.02 1.26 16 45 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -69.58 383.71 5.02 -64.56 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.99 Total: 22.50 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 8.15 Total: 20.99 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -5.82 Total: -104.79 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.18 Total: -44.69 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.88 Total: 41.43 kcal Total: -69.58 5.02 -64.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012542703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.615 kcal (2) G-P(sol) polarization free energy of solvation -69.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds