Wall clock time and date at job start Tue Mar 31 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00266 * 2 1 4 4 H 1.48501 * 109.47098 * 270.00068 * 3 2 1 5 5 H 1.48498 * 109.47091 * 29.99966 * 3 2 1 6 6 H 1.48504 * 109.47192 * 150.00287 * 3 2 1 7 7 C 1.37881 * 119.99551 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00076 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99936 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.36832 * 124.95048 * 265.02044 * 10 9 7 12 12 C 1.35423 * 109.72373 * 179.97438 * 11 10 9 13 13 C 1.48348 * 126.63160 * 180.02562 * 12 11 10 14 14 C 1.34354 * 122.34491 * 354.52069 * 13 12 11 15 15 S 1.76185 * 108.31723 * 179.87699 * 14 13 12 16 16 C 1.76090 * 90.09538 * 0.31568 * 15 14 13 17 17 N 1.38553 * 125.28334 * 179.77588 * 16 15 14 18 18 C 1.46846 * 110.99669 * 124.25263 * 17 16 15 19 19 C 1.53038 * 109.52411 * 174.15709 * 18 17 16 20 20 C 1.53127 * 109.27540 * 59.18530 * 19 18 17 21 21 C 1.53118 * 109.15686 * 302.34333 * 20 19 18 22 22 C 1.46845 * 111.00250 * 0.04688 * 17 16 15 23 23 N 1.29759 * 109.42861 * 359.81936 * 16 15 14 24 24 C 1.47141 * 106.73186 * 359.80132 * 12 11 10 25 25 C 1.39443 * 133.94419 * 179.59515 * 24 12 11 26 26 C 1.36682 * 119.78771 * 180.32199 * 25 24 12 27 27 C 1.38805 * 120.48698 * 0.27440 * 26 25 24 28 28 C 1.37748 * 120.64607 * 359.95756 * 27 26 25 29 29 C 1.37750 * 124.95661 * 84.99463 * 10 9 7 30 30 H 0.96996 * 119.99859 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47256 * 59.99006 * 9 7 2 32 32 H 1.09002 * 109.46529 * 299.99642 * 9 7 2 33 33 H 1.07998 * 125.13544 * 359.97438 * 11 10 9 34 34 H 1.08005 * 125.83946 * 359.97438 * 14 13 12 35 35 H 1.08999 * 109.46783 * 294.17969 * 18 17 16 36 36 H 1.09007 * 109.46307 * 54.14622 * 18 17 16 37 37 H 1.08993 * 109.50428 * 299.24365 * 19 18 17 38 38 H 1.08999 * 109.50525 * 179.11957 * 19 18 17 39 39 H 1.08992 * 109.52189 * 182.44151 * 20 19 18 40 40 H 1.08995 * 109.57828 * 62.27806 * 20 19 18 41 41 H 1.08999 * 109.50768 * 297.71237 * 21 20 19 42 42 H 1.08994 * 109.50301 * 177.59739 * 21 20 19 43 43 H 1.08999 * 109.46344 * 305.85433 * 22 17 16 44 44 H 1.09003 * 109.46550 * 65.83301 * 22 17 16 45 45 H 1.08001 * 120.10834 * 0.59417 * 25 24 12 46 46 H 1.07995 * 119.75464 * 180.24956 * 26 25 24 47 47 H 1.07999 * 119.67632 * 179.97438 * 27 26 25 48 48 H 1.08001 * 120.10654 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0013 11 6 4.3523 -3.2833 1.1153 12 6 4.7583 -4.5253 0.7598 13 6 5.2211 -5.6001 1.6716 14 6 5.3872 -5.4022 2.9901 15 16 5.9389 -6.9120 3.7114 16 6 5.9024 -7.6846 2.1295 17 7 6.2442 -9.0029 1.8746 18 6 5.1452 -9.7117 1.2067 19 6 5.6078 -11.1158 0.8111 20 6 6.0427 -11.8772 2.0664 21 6 7.1546 -11.0936 2.7694 22 6 6.6472 -9.6901 3.1082 23 7 5.5065 -6.8273 1.2395 24 6 4.6464 -4.6044 -0.7052 25 6 4.9168 -5.5994 -1.6440 26 6 4.7077 -5.3545 -2.9723 27 6 4.2335 -4.1202 -3.3947 28 6 3.9647 -3.1222 -2.4841 29 6 4.1703 -3.3511 -1.1268 30 1 -0.4850 0.8400 0.0004 31 1 3.8745 -0.6809 0.8904 32 1 3.8751 -0.6799 -0.8895 33 1 4.3128 -2.9081 2.1273 34 1 5.2109 -4.4765 3.5178 35 1 4.2958 -9.7870 1.8856 36 1 4.8482 -9.1621 0.3134 37 1 6.4484 -11.0411 0.1213 38 1 4.7870 -11.6472 0.3294 39 1 6.4138 -12.8625 1.7846 40 1 5.1928 -11.9869 2.7399 41 1 8.0196 -11.0185 2.1104 42 1 7.4390 -11.6090 3.6867 43 1 7.4411 -9.1247 3.5961 44 1 5.7907 -9.7657 3.7782 45 1 5.2860 -6.5620 -1.3222 46 1 4.9135 -6.1268 -3.6986 47 1 4.0734 -3.9407 -4.4476 48 1 3.5956 -2.1653 -2.8224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012556072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:31 Heat of formation + Delta-G solvation = 104.860429 kcal Electronic energy + Delta-G solvation = -29734.769784 eV Core-core repulsion = 25881.393640 eV Total energy + Delta-G solvation = -3853.376143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.79867 -40.05289 -38.44221 -36.51479 -34.19167 -33.34995 -31.90992 -31.35562 -29.82678 -29.74593 -28.08709 -26.89111 -25.61675 -23.76264 -23.63555 -22.71530 -21.74588 -21.06754 -20.25013 -19.90548 -18.71690 -18.02212 -17.17878 -16.53425 -16.09349 -15.70380 -15.45114 -15.13392 -14.89718 -14.83338 -14.55783 -14.33414 -13.87705 -13.83176 -13.59817 -13.40381 -13.30450 -13.18893 -12.89350 -12.61674 -12.54207 -12.05918 -12.04365 -11.70631 -11.54457 -11.45480 -11.24980 -11.08518 -10.95958 -10.90830 -10.86575 -10.76225 -10.40246 -10.23247 -10.06097 -9.72228 -9.44288 -9.28964 -8.85885 -8.80640 -8.12664 -7.57706 -6.77806 -6.32787 -4.37223 0.80993 1.25525 1.69840 1.84247 2.18779 2.65934 3.05221 3.09544 3.15850 3.18213 3.61778 3.79023 4.15144 4.28861 4.41043 4.50821 4.55484 4.66772 4.79344 4.90720 4.96063 5.10229 5.14521 5.19981 5.26589 5.34784 5.41521 5.45561 5.47403 5.53858 5.55251 5.62701 5.71562 5.76255 5.79891 5.94190 5.97269 6.06995 6.18493 6.29086 6.32641 6.38852 6.40794 6.46479 6.65430 6.68902 7.03404 7.17421 7.21846 7.30323 7.43418 7.85532 7.88413 7.99837 8.25243 8.72922 9.22504 10.79472 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.014215 B = 0.002420 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.344469 B =11568.210247 C =12813.155954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.080 3.920 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.207 3.793 10 N -0.442 5.442 11 C 0.107 3.893 12 C -0.153 4.153 13 C 0.196 3.804 14 C -0.276 4.276 15 S 0.013 5.987 16 C 0.267 3.733 17 N -0.437 5.437 18 C 0.061 3.939 19 C -0.118 4.118 20 C -0.125 4.125 21 C -0.114 4.114 22 C 0.045 3.955 23 N -0.476 5.476 24 C -0.082 4.082 25 C -0.067 4.067 26 C -0.157 4.157 27 C -0.114 4.114 28 C -0.112 4.112 29 C 0.104 3.896 30 H 0.269 0.731 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.166 0.834 34 H 0.174 0.826 35 H 0.047 0.953 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.123 0.877 46 H 0.113 0.887 47 H 0.117 0.883 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.919 -19.877 5.099 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.100 0.900 9 C 0.088 3.912 10 N -0.118 5.118 11 C -0.027 4.027 12 C -0.163 4.163 13 C 0.068 3.932 14 C -0.415 4.415 15 S 0.261 5.739 16 C -0.106 4.106 17 N -0.158 5.158 18 C -0.067 4.067 19 C -0.156 4.156 20 C -0.163 4.163 21 C -0.152 4.152 22 C -0.082 4.082 23 N -0.195 5.195 24 C -0.087 4.087 25 C -0.086 4.086 26 C -0.176 4.176 27 C -0.134 4.134 28 C -0.132 4.132 29 C -0.003 4.003 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.183 0.817 34 H 0.192 0.808 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.141 0.859 46 H 0.131 0.869 47 H 0.135 0.865 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.233 -19.905 5.247 25.026 hybrid contribution -0.661 1.836 0.101 1.954 sum 13.571 -18.069 5.348 23.222 Atomic orbital electron populations 1.69875 1.06193 1.27454 1.48524 1.24838 0.94815 0.98873 0.93979 0.86903 0.80316 0.83772 0.79112 1.19630 1.20515 1.18921 1.21213 0.88081 0.95562 1.53609 0.89984 1.20104 0.96836 0.75672 0.98624 1.44372 1.50483 1.13335 1.03615 1.21716 0.98144 0.90904 0.91891 1.17759 1.15499 0.92466 0.90581 1.17768 0.96951 0.88802 0.89706 1.26202 1.15996 1.02116 0.97194 1.84810 1.68246 1.07084 1.13744 1.26011 0.99772 0.94846 0.89941 1.58335 1.36099 0.97334 1.24029 1.22332 0.89900 0.94748 0.99679 1.21651 1.02136 0.93805 0.98035 1.21643 0.98526 0.98932 0.97197 1.21579 0.99106 0.93166 1.01321 1.22407 1.01049 0.96017 0.88768 1.66567 1.18273 1.01509 1.33146 1.18840 1.04352 0.93624 0.91890 1.20243 0.98585 0.98105 0.91631 1.20519 1.04410 0.97260 0.95459 1.20684 1.00965 0.93281 0.98441 1.20129 1.03155 1.00338 0.89613 1.18255 1.02309 0.90932 0.88849 0.92072 0.93603 0.94273 0.81711 0.80848 0.93437 0.88503 0.90555 0.90595 0.91235 0.91904 0.90513 0.90593 0.89471 0.92695 0.85919 0.86941 0.86515 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 13.96 55.43 0.77 -25.06 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 19.74 27.47 -169.99 -4.67 15.07 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 7 C -0.55 -14.77 9.94 -34.44 -0.34 -15.11 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.21 4.69 4.81 -5.20 -0.02 4.67 16 10 N -0.44 -9.46 2.76 -115.39 -0.32 -9.78 16 11 C 0.11 2.04 10.82 -16.32 -0.18 1.86 16 12 C -0.15 -2.90 6.27 -103.13 -0.65 -3.55 16 13 C 0.20 3.33 6.68 -84.48 -0.56 2.77 16 14 C -0.28 -3.99 10.78 29.36 0.32 -3.67 16 15 S 0.01 0.16 21.52 -107.50 -2.31 -2.16 16 16 C 0.27 3.62 6.98 -87.68 -0.61 3.01 16 17 N -0.44 -4.81 4.72 -173.79 -0.82 -5.63 16 18 C 0.06 0.60 5.38 -3.83 -0.02 0.58 16 19 C -0.12 -0.84 6.09 -26.65 -0.16 -1.01 16 20 C -0.13 -0.73 6.00 -26.60 -0.16 -0.89 16 21 C -0.11 -0.69 6.09 -26.65 -0.16 -0.85 16 22 C 0.05 0.37 4.52 -3.83 -0.02 0.35 16 23 N -0.48 -7.79 9.34 -10.39 -0.10 -7.89 16 24 C -0.08 -1.65 6.30 -104.97 -0.66 -2.31 16 25 C -0.07 -1.21 9.87 -39.70 -0.39 -1.60 16 26 C -0.16 -2.56 9.98 -39.93 -0.40 -2.96 16 27 C -0.11 -1.92 10.01 -39.55 -0.40 -2.31 16 28 C -0.11 -2.19 9.99 -39.41 -0.39 -2.58 16 29 C 0.10 2.19 6.80 -83.99 -0.57 1.62 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.05 0.99 7.17 -51.93 -0.37 0.61 16 32 H 0.04 0.87 7.57 -51.93 -0.39 0.47 16 33 H 0.17 2.60 7.66 -52.49 -0.40 2.20 16 34 H 0.17 2.16 7.62 -52.48 -0.40 1.76 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 1.12 7.83 -51.93 -0.41 0.72 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 0.70 7.49 -51.93 -0.39 0.31 16 44 H 0.05 0.43 8.05 -51.93 -0.42 0.02 16 45 H 0.12 2.11 7.39 -52.49 -0.39 1.72 16 46 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 47 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 48 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -31.14 401.59 -13.86 -45.00 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.99 Total: 4.31 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -5.48 Total: -19.92 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.46 Total: -48.36 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.67 Total: 15.07 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.31 Total: -2.16 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.14 -13.86 -45.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012556072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.857 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds