Wall clock time and date at job start Tue Mar 31 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00266 * 2 1 4 4 H 1.48501 * 109.47098 * 270.00068 * 3 2 1 5 5 H 1.48498 * 109.47091 * 29.99966 * 3 2 1 6 6 H 1.48504 * 109.47192 * 150.00287 * 3 2 1 7 7 C 1.37881 * 119.99551 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00076 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99936 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.36832 * 124.95048 * 265.02044 * 10 9 7 12 12 C 1.35423 * 109.72373 * 179.97438 * 11 10 9 13 13 C 1.48348 * 126.63160 * 180.02562 * 12 11 10 14 14 C 1.34354 * 122.34491 * 354.52069 * 13 12 11 15 15 S 1.76185 * 108.31723 * 179.87699 * 14 13 12 16 16 C 1.76090 * 90.09538 * 0.31568 * 15 14 13 17 17 N 1.38553 * 125.28334 * 179.77588 * 16 15 14 18 18 C 1.46846 * 110.99669 * 124.25263 * 17 16 15 19 19 C 1.53038 * 109.52411 * 174.15709 * 18 17 16 20 20 C 1.53127 * 109.27540 * 59.18530 * 19 18 17 21 21 C 1.53118 * 109.15686 * 302.34333 * 20 19 18 22 22 C 1.46845 * 111.00250 * 0.04688 * 17 16 15 23 23 N 1.29759 * 109.42861 * 359.81936 * 16 15 14 24 24 C 1.47141 * 106.73186 * 359.80132 * 12 11 10 25 25 C 1.39443 * 133.94419 * 179.59515 * 24 12 11 26 26 C 1.36682 * 119.78771 * 180.32199 * 25 24 12 27 27 C 1.38805 * 120.48698 * 0.27440 * 26 25 24 28 28 C 1.37748 * 120.64607 * 359.95756 * 27 26 25 29 29 C 1.37750 * 124.95661 * 84.99463 * 10 9 7 30 30 H 0.96996 * 119.99859 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47256 * 59.99006 * 9 7 2 32 32 H 1.09002 * 109.46529 * 299.99642 * 9 7 2 33 33 H 1.07998 * 125.13544 * 359.97438 * 11 10 9 34 34 H 1.08005 * 125.83946 * 359.97438 * 14 13 12 35 35 H 1.08999 * 109.46783 * 294.17969 * 18 17 16 36 36 H 1.09007 * 109.46307 * 54.14622 * 18 17 16 37 37 H 1.08993 * 109.50428 * 299.24365 * 19 18 17 38 38 H 1.08999 * 109.50525 * 179.11957 * 19 18 17 39 39 H 1.08992 * 109.52189 * 182.44151 * 20 19 18 40 40 H 1.08995 * 109.57828 * 62.27806 * 20 19 18 41 41 H 1.08999 * 109.50768 * 297.71237 * 21 20 19 42 42 H 1.08994 * 109.50301 * 177.59739 * 21 20 19 43 43 H 1.08999 * 109.46344 * 305.85433 * 22 17 16 44 44 H 1.09003 * 109.46550 * 65.83301 * 22 17 16 45 45 H 1.08001 * 120.10834 * 0.59417 * 25 24 12 46 46 H 1.07995 * 119.75464 * 180.24956 * 26 25 24 47 47 H 1.07999 * 119.67632 * 179.97438 * 27 26 25 48 48 H 1.08001 * 120.10654 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0013 11 6 4.3523 -3.2833 1.1153 12 6 4.7583 -4.5253 0.7598 13 6 5.2211 -5.6001 1.6716 14 6 5.3872 -5.4022 2.9901 15 16 5.9389 -6.9120 3.7114 16 6 5.9024 -7.6846 2.1295 17 7 6.2442 -9.0029 1.8746 18 6 5.1452 -9.7117 1.2067 19 6 5.6078 -11.1158 0.8111 20 6 6.0427 -11.8772 2.0664 21 6 7.1546 -11.0936 2.7694 22 6 6.6472 -9.6901 3.1082 23 7 5.5065 -6.8273 1.2395 24 6 4.6464 -4.6044 -0.7052 25 6 4.9168 -5.5994 -1.6440 26 6 4.7077 -5.3545 -2.9723 27 6 4.2335 -4.1202 -3.3947 28 6 3.9647 -3.1222 -2.4841 29 6 4.1703 -3.3511 -1.1268 30 1 -0.4850 0.8400 0.0004 31 1 3.8745 -0.6809 0.8904 32 1 3.8751 -0.6799 -0.8895 33 1 4.3128 -2.9081 2.1273 34 1 5.2109 -4.4765 3.5178 35 1 4.2958 -9.7870 1.8856 36 1 4.8482 -9.1621 0.3134 37 1 6.4484 -11.0411 0.1213 38 1 4.7870 -11.6472 0.3294 39 1 6.4138 -12.8625 1.7846 40 1 5.1928 -11.9869 2.7399 41 1 8.0196 -11.0185 2.1104 42 1 7.4390 -11.6090 3.6867 43 1 7.4411 -9.1247 3.5961 44 1 5.7907 -9.7657 3.7782 45 1 5.2860 -6.5620 -1.3222 46 1 4.9135 -6.1268 -3.6986 47 1 4.0734 -3.9407 -4.4476 48 1 3.5956 -2.1653 -2.8224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012556072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:31 Heat of formation + Delta-G solvation = 89.478353 kcal Electronic energy + Delta-G solvation = -29735.436801 eV Core-core repulsion = 25881.393640 eV Total energy + Delta-G solvation = -3854.043160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.22919 -40.96941 -39.41291 -37.95338 -35.47836 -34.75941 -33.48926 -32.00385 -31.39441 -30.96638 -29.59120 -28.40112 -26.51945 -25.05680 -24.38360 -24.11130 -23.18967 -22.37589 -21.26074 -20.86927 -19.90515 -19.24092 -19.12291 -17.68383 -17.52134 -17.01750 -16.45780 -16.28245 -16.17666 -15.89804 -15.65173 -15.39556 -15.18318 -14.91380 -14.81906 -14.52985 -14.45504 -14.41288 -14.21922 -13.93893 -13.72165 -13.52948 -13.26325 -13.13809 -12.76040 -12.59728 -12.49475 -12.32107 -12.22403 -11.96277 -11.85106 -11.71077 -11.64611 -11.49940 -11.44631 -11.17457 -10.92918 -10.66752 -10.47546 -9.97425 -9.23291 -9.03141 -8.42969 -8.17514 -6.53868 -0.29971 0.20621 0.31072 0.73269 0.78549 1.32511 1.33494 1.33722 1.43545 2.01424 2.23512 2.25962 2.46396 2.89778 3.11452 3.50014 3.76186 3.83448 3.86154 3.88779 3.97402 4.11707 4.20381 4.25779 4.28558 4.34438 4.43849 4.46473 4.48587 4.51683 4.57348 4.71649 4.75763 4.80351 4.81136 4.84862 4.92969 4.96768 5.03788 5.15441 5.20465 5.22159 5.23383 5.26759 5.43962 5.59814 5.65599 5.72202 5.78210 5.88138 5.97888 6.02536 6.41450 6.45133 6.54678 6.87949 7.11154 8.73903 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.014215 B = 0.002420 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.344469 B =11568.210247 C =12813.155954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.021 3.979 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.237 1.237 7 C -0.551 4.551 8 H 0.025 0.975 9 C 0.218 3.782 10 N -0.461 5.461 11 C 0.088 3.912 12 C -0.153 4.153 13 C 0.168 3.832 14 C -0.280 4.280 15 S 0.072 5.928 16 C 0.259 3.741 17 N -0.442 5.442 18 C 0.061 3.939 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.109 4.109 22 C 0.039 3.961 23 N -0.509 5.509 24 C -0.106 4.106 25 C -0.074 4.074 26 C -0.150 4.150 27 C -0.103 4.103 28 C -0.141 4.141 29 C 0.074 3.926 30 H 0.273 0.727 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.190 0.810 34 H 0.190 0.810 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.127 0.873 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.321 -21.239 5.826 27.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.161 1.161 7 C -0.589 4.589 8 H 0.043 0.957 9 C 0.097 3.903 10 N -0.138 5.138 11 C -0.043 4.043 12 C -0.163 4.163 13 C 0.039 3.961 14 C -0.419 4.419 15 S 0.322 5.678 16 C -0.113 4.113 17 N -0.163 5.163 18 C -0.066 4.066 19 C -0.151 4.151 20 C -0.160 4.160 21 C -0.147 4.147 22 C -0.087 4.087 23 N -0.229 5.229 24 C -0.111 4.111 25 C -0.093 4.093 26 C -0.169 4.169 27 C -0.122 4.122 28 C -0.161 4.161 29 C -0.033 4.033 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.207 0.793 34 H 0.207 0.793 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.145 0.855 46 H 0.168 0.832 47 H 0.168 0.832 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 16.668 -21.326 5.997 27.723 hybrid contribution -1.406 1.992 -0.114 2.440 sum 15.262 -19.334 5.883 25.325 Atomic orbital electron populations 1.70041 1.08447 1.28836 1.50228 1.25846 0.95642 1.03297 0.93109 0.85691 0.79713 0.77734 0.79761 1.18750 1.20230 1.16054 1.21312 0.90561 0.93523 1.53534 0.95682 1.19856 0.93656 0.77207 0.99547 1.44302 1.51919 1.13102 1.04506 1.22134 0.98671 0.91114 0.92396 1.18082 1.14433 0.93033 0.90735 1.17718 0.99041 0.88989 0.90356 1.26558 1.14465 1.04049 0.96867 1.84532 1.66855 1.04717 1.11730 1.26401 0.98713 0.95646 0.90537 1.58428 1.35952 0.96557 1.25388 1.22338 0.89810 0.95862 0.98592 1.21645 1.02350 0.92235 0.98867 1.21649 0.98637 0.99348 0.96372 1.21600 0.98889 0.91837 1.02365 1.22606 1.01314 0.97100 0.87711 1.66501 1.19976 1.01743 1.34655 1.19211 1.05065 0.93837 0.92962 1.20446 0.98655 0.97876 0.92284 1.20934 1.02704 0.97858 0.95431 1.21088 0.98979 0.92545 0.99635 1.20342 1.04844 1.01158 0.89785 1.18664 1.03412 0.91680 0.89495 0.91809 0.91713 0.93542 0.79327 0.79307 0.93499 0.90934 0.91017 0.89452 0.89568 0.91449 0.90865 0.88340 0.89267 0.92106 0.85485 0.83239 0.83152 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.95 13.96 21.45 0.30 -56.65 16 2 C 0.02 1.16 5.47 84.66 0.46 1.62 16 3 Si 0.95 40.71 27.47 68.60 1.88 42.60 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16 7 C -0.55 -31.16 9.94 25.60 0.25 -30.90 16 8 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 9 C 0.22 10.03 4.81 85.63 0.41 10.45 16 10 N -0.46 -20.46 2.76 -518.97 -1.43 -21.90 16 11 C 0.09 3.47 10.82 83.26 0.90 4.37 16 12 C -0.15 -6.02 6.27 -18.90 -0.12 -6.13 16 13 C 0.17 5.79 6.68 40.74 0.27 6.06 16 14 C -0.28 -7.92 10.78 66.93 0.72 -7.20 16 15 S 0.07 1.64 21.52 -56.49 -1.22 0.43 16 16 C 0.26 6.90 6.98 179.32 1.25 8.15 16 17 N -0.44 -9.31 4.72 -703.75 -3.32 -12.63 16 18 C 0.06 1.18 5.38 86.33 0.46 1.64 16 19 C -0.11 -1.44 6.09 30.65 0.19 -1.25 16 20 C -0.12 -1.09 6.00 30.68 0.18 -0.91 16 21 C -0.11 -1.02 6.09 30.65 0.19 -0.84 16 22 C 0.04 0.56 4.52 86.33 0.39 0.95 16 23 N -0.51 -16.89 9.34 -186.78 -1.74 -18.63 16 24 C -0.11 -4.40 6.30 -20.09 -0.13 -4.53 16 25 C -0.07 -2.69 9.87 22.20 0.22 -2.47 16 26 C -0.15 -4.71 9.98 22.04 0.22 -4.49 16 27 C -0.10 -3.38 10.01 22.29 0.22 -3.16 16 28 C -0.14 -5.66 9.99 22.38 0.22 -5.43 16 29 C 0.07 3.25 6.80 39.00 0.27 3.52 16 30 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.06 2.72 7.17 -2.39 -0.02 2.71 16 32 H 0.05 2.06 7.57 -2.39 -0.02 2.04 16 33 H 0.19 6.06 7.66 -2.91 -0.02 6.03 16 34 H 0.19 4.53 7.62 -2.91 -0.02 4.50 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.74 7.83 -2.38 -0.02 1.72 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.09 1.23 7.49 -2.39 -0.02 1.21 16 44 H 0.06 0.81 8.05 -2.39 -0.02 0.79 16 45 H 0.13 4.43 7.39 -2.91 -0.02 4.41 16 46 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 47 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 48 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -72.42 401.59 1.97 -70.45 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.91 Total: 26.90 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 6.59 Total: -30.56 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -6.20 Total: -109.81 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.88 Total: 42.60 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.22 Total: 0.43 kcal Total: -72.42 1.97 -70.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012556072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.928 kcal (2) G-P(sol) polarization free energy of solvation -72.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds