Wall clock time and date at job start Tue Mar 31 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00419 * 2 1 4 4 H 1.48501 * 109.47465 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46968 * 299.99999 * 3 2 1 6 6 H 1.48506 * 109.47285 * 59.99562 * 3 2 1 7 7 C 1.37876 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00061 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46852 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00597 * 90.00414 * 10 9 7 12 12 O 1.21292 * 119.99801 * 5.20149 * 11 10 9 13 13 C 1.50692 * 120.00558 * 185.20875 * 11 10 9 14 14 S 1.80994 * 109.47425 * 184.03637 * 13 11 10 15 15 C 1.76202 * 100.00237 * 179.97438 * 14 13 11 16 16 N 1.31054 * 125.07992 * 359.97438 * 15 14 13 17 17 C 1.35871 * 109.62526 * 180.02562 * 16 15 14 18 18 C 1.39721 * 133.38117 * 180.28972 * 17 16 15 19 19 C 1.37687 * 119.78210 * 180.10830 * 18 17 16 20 20 C 1.38698 * 120.49560 * 359.58659 * 19 18 17 21 21 C 1.37982 * 120.43107 * 0.19050 * 20 19 18 22 22 C 1.38651 * 119.85425 * 0.02562 * 21 20 19 23 23 N 1.36635 * 125.08136 * 179.97438 * 15 14 13 24 24 H 0.97002 * 126.38070 * 359.97438 * 23 15 14 25 25 C 1.39928 * 120.00008 * 269.99774 * 10 9 7 26 26 C 1.38870 * 120.07090 * 112.26207 * 25 10 9 27 27 C 1.38110 * 119.92798 * 179.74901 * 26 25 10 28 28 C 1.38288 * 120.07225 * 0.53367 * 27 26 25 29 29 C 1.38280 * 120.13693 * 359.74153 * 28 27 26 30 30 C 1.38106 * 120.07236 * 359.97438 * 29 28 27 31 31 H 0.97002 * 120.00046 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47132 * 60.00384 * 9 7 2 33 33 H 1.08997 * 109.47188 * 299.99672 * 9 7 2 34 34 H 1.09002 * 109.47513 * 64.02804 * 13 11 10 35 35 H 1.09002 * 109.47072 * 304.03369 * 13 11 10 36 36 H 1.08001 * 120.10570 * 359.93372 * 18 17 16 37 37 H 1.07995 * 119.75717 * 179.80110 * 19 18 17 38 38 H 1.08000 * 119.78639 * 180.20229 * 20 19 18 39 39 H 1.08008 * 120.07008 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.03595 * 0.03252 * 26 25 10 41 41 H 1.08004 * 119.96716 * 180.27645 * 27 26 25 42 42 H 1.07995 * 119.92809 * 179.72034 * 28 27 26 43 43 H 1.08000 * 119.96218 * 179.97438 * 29 28 27 44 44 H 1.08004 * 120.03714 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 2.6399 -4.1245 1.1695 12 8 2.1750 -3.7279 2.2172 13 6 3.7062 -5.1893 1.1734 14 16 3.9902 -5.7525 2.8699 15 6 5.2437 -6.9579 2.5865 16 7 5.7429 -7.2641 1.4140 17 6 6.6865 -8.2310 1.5581 18 6 7.5158 -8.9045 0.6576 19 6 8.3917 -9.8614 1.1189 20 6 8.4634 -10.1562 2.4723 21 6 7.6546 -9.4967 3.3750 22 6 6.7635 -8.5333 2.9277 23 7 5.8406 -7.7132 3.5561 24 1 5.6529 -7.6812 4.5073 25 6 2.6584 -4.1450 -1.2095 26 6 3.9864 -3.9866 -1.5835 27 6 4.4341 -4.5177 -2.7772 28 6 3.5590 -5.1972 -3.6048 29 6 2.2348 -5.3517 -3.2379 30 6 1.7822 -4.8280 -2.0428 31 1 -0.4850 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8897 33 1 0.6239 -2.5568 0.8903 34 1 4.6308 -4.7793 0.7671 35 1 3.3818 -6.0306 0.5609 36 1 7.4678 -8.6772 -0.3971 37 1 9.0302 -10.3840 0.4221 38 1 9.1570 -10.9066 2.8219 39 1 7.7156 -9.7306 4.4277 40 1 4.6694 -3.4526 -0.9395 41 1 5.4678 -4.3987 -3.0666 42 1 3.9106 -5.6076 -4.5398 43 1 1.5537 -5.8825 -3.8866 44 1 0.7477 -4.9487 -1.7569 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012563488.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:58 Heat of formation + Delta-G solvation = 73.208672 kcal Electronic energy + Delta-G solvation = -29116.385293 eV Core-core repulsion = 25125.803532 eV Total energy + Delta-G solvation = -3990.581761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08496 -39.98997 -38.17799 -37.38064 -34.99284 -33.37208 -32.79479 -30.87936 -30.29148 -30.02063 -29.53414 -29.26948 -26.82826 -23.83171 -23.06134 -22.61900 -22.46859 -22.09083 -21.69386 -19.30379 -18.60763 -17.60881 -16.99755 -16.68699 -16.62002 -16.21232 -15.75566 -15.56191 -15.17896 -14.91749 -14.54731 -14.41309 -14.24295 -14.18244 -14.11564 -13.53895 -13.16139 -13.03874 -12.73255 -12.35424 -12.28991 -12.23406 -12.02753 -11.80193 -11.51916 -11.27713 -11.06755 -10.97439 -10.86009 -10.76363 -10.65072 -10.25379 -10.21347 -9.79500 -9.59356 -9.21513 -8.69532 -8.65490 -8.49487 -8.48414 -7.79841 -7.55992 -6.11757 -4.16694 0.66106 0.90958 1.27698 1.54008 1.64011 1.92049 2.44726 2.87759 3.01784 3.26969 3.34460 3.38445 3.64948 3.65108 4.01638 4.19978 4.39459 4.64210 4.71821 4.79595 5.05946 5.08720 5.09740 5.17440 5.21242 5.23046 5.23904 5.34414 5.46818 5.49674 5.67036 5.79688 5.81002 5.99494 6.09633 6.24928 6.26196 6.27776 6.58270 6.59854 6.72696 6.75855 6.88020 6.92554 7.15655 7.25340 7.36033 7.51273 7.83135 8.10283 8.14053 8.62507 8.87382 9.48179 10.96690 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.011459 B = 0.002635 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.989031 B =10624.684813 C =11933.715639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.247 3.753 10 N -0.550 5.550 11 C 0.532 3.468 12 O -0.516 6.516 13 C -0.135 4.135 14 S 0.070 5.930 15 C 0.256 3.744 16 N -0.493 5.493 17 C 0.060 3.940 18 C -0.067 4.067 19 C -0.128 4.128 20 C -0.106 4.106 21 C -0.111 4.111 22 C 0.051 3.949 23 N -0.585 5.585 24 H 0.426 0.574 25 C 0.155 3.845 26 C -0.121 4.121 27 C -0.107 4.107 28 C -0.131 4.131 29 C -0.109 4.109 30 C -0.122 4.122 31 H 0.264 0.736 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.889 -20.328 0.476 24.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.130 3.870 10 N -0.278 5.278 11 C 0.318 3.682 12 O -0.392 6.392 13 C -0.287 4.287 14 S 0.300 5.700 15 C -0.119 4.119 16 N -0.218 5.218 17 C -0.061 4.061 18 C -0.087 4.087 19 C -0.148 4.148 20 C -0.126 4.126 21 C -0.132 4.132 22 C -0.060 4.060 23 N -0.200 5.200 24 H 0.266 0.734 25 C 0.063 3.937 26 C -0.140 4.140 27 C -0.125 4.125 28 C -0.149 4.149 29 C -0.128 4.128 30 C -0.142 4.142 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.659 -19.205 1.262 23.036 hybrid contribution 1.195 0.340 -0.077 1.245 sum 13.854 -18.865 1.185 23.435 Atomic orbital electron populations 1.69933 1.05987 1.27103 1.50088 1.24907 0.94903 0.99247 0.94856 0.86417 0.80038 0.83198 0.77665 1.19704 1.20867 1.20786 1.21384 0.93438 0.90313 1.51581 0.92235 1.19532 0.87078 0.81258 0.99142 1.45830 1.45506 1.34416 1.02054 1.19374 0.82434 0.82022 0.84412 1.90733 1.57307 1.60948 1.30244 1.23863 1.04232 1.03046 0.97598 1.86325 1.37146 1.36817 1.09684 1.26061 1.00731 0.98936 0.86150 1.71081 1.12946 1.16599 1.21193 1.19124 0.98027 0.97379 0.91560 1.20307 0.94288 0.95183 0.98920 1.20894 0.99626 0.98588 0.95723 1.20867 0.99023 0.99796 0.92960 1.19931 0.96671 0.96570 1.00015 1.18964 0.95983 0.97455 0.93610 1.42885 1.33560 1.33410 1.10102 0.73414 1.17738 0.92665 0.95145 0.88117 1.21343 0.95574 0.99817 0.97285 1.20963 0.99562 0.97919 0.94074 1.21073 0.93749 1.00403 0.99671 1.20960 0.95817 0.99943 0.96091 1.21276 1.00023 0.97817 0.95058 0.92627 0.94325 0.93064 0.85710 0.86078 0.85215 0.85316 0.85316 0.85997 0.85932 0.86070 0.86341 0.86036 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.25 6.33 5.15 -5.19 -0.03 6.31 16 10 N -0.55 -11.62 2.51 -114.74 -0.29 -11.90 16 11 C 0.53 10.85 7.59 -10.99 -0.08 10.76 16 12 O -0.52 -12.26 15.42 5.55 0.09 -12.17 16 13 C -0.14 -2.17 4.17 36.00 0.15 -2.02 16 14 S 0.07 1.02 21.45 -107.50 -2.31 -1.29 16 15 C 0.26 3.50 8.20 -88.44 -0.73 2.78 16 16 N -0.49 -7.35 10.57 -10.90 -0.12 -7.46 16 17 C 0.06 0.80 7.22 -84.69 -0.61 0.19 16 18 C -0.07 -0.72 10.10 -39.23 -0.40 -1.12 16 19 C -0.13 -1.07 10.01 -39.61 -0.40 -1.47 16 20 C -0.11 -0.83 10.03 -39.51 -0.40 -1.23 16 21 C -0.11 -0.99 10.06 -39.52 -0.40 -1.38 16 22 C 0.05 0.60 7.29 -83.84 -0.61 -0.02 16 23 N -0.59 -6.52 6.28 -10.57 -0.07 -6.59 16 24 H 0.43 3.39 8.96 -40.82 -0.37 3.02 16 25 C 0.16 2.78 4.45 -83.69 -0.37 2.41 16 26 C -0.12 -1.94 8.44 -39.39 -0.33 -2.27 16 27 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 28 C -0.13 -1.63 10.04 -39.55 -0.40 -2.02 16 29 C -0.11 -1.45 10.04 -39.61 -0.40 -1.84 16 30 C -0.12 -1.94 9.67 -39.39 -0.38 -2.33 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.04 1.01 7.85 -51.93 -0.41 0.60 16 33 H 0.05 1.45 7.35 -51.93 -0.38 1.07 16 34 H 0.12 1.93 6.84 -51.92 -0.35 1.57 16 35 H 0.12 1.83 7.91 -51.91 -0.41 1.42 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 40 H 0.12 1.98 7.56 -52.49 -0.40 1.58 16 41 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -33.68 394.77 -12.46 -46.14 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.25 Total: 4.45 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -6.19 Total: -8.43 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.27 Total: -51.32 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.31 Total: -1.29 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.68 -12.46 -46.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012563488.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.349 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds