Wall clock time and date at job start Tue Mar 31 2020 05:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.09004 * 109.47242 * 304.99652 * 3 2 1 5 5 C 1.52996 * 109.47128 * 65.00432 * 3 2 1 6 6 C 1.53004 * 109.46988 * 185.00447 * 3 2 1 7 7 C 1.50698 * 109.47086 * 175.00045 * 6 3 2 8 8 C 1.31876 * 122.59446 * 270.02230 * 7 6 3 9 9 C 1.50702 * 124.33921 * 359.97438 * 8 7 6 10 10 S 1.75325 * 111.31482 * 179.97438 * 8 7 6 11 11 C 1.75889 * 92.17636 * 0.02562 * 10 8 7 12 12 N 1.34783 * 130.72015 * 179.97438 * 11 10 8 13 13 C 1.31140 * 121.58847 * 180.02562 * 12 11 10 14 14 S 1.76202 * 119.21422 * 179.97438 * 13 12 11 15 15 C 1.81005 * 99.99731 * 0.02562 * 14 13 12 16 16 C 1.52998 * 109.46789 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47011 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99925 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99859 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00209 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99588 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47289 * 60.00547 * 21 19 17 23 23 H 1.48510 * 109.46879 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47595 * 300.00112 * 21 19 17 25 25 N 1.36494 * 121.57198 * 359.61026 * 13 12 11 26 26 H 0.97000 * 119.85387 * 180.34268 * 25 13 12 27 27 C 1.34705 * 120.28821 * 0.72674 * 25 13 12 28 28 O 1.21913 * 120.55528 * 179.61944 * 27 25 13 29 29 C 1.39321 * 109.60681 * 359.97438 * 11 10 8 30 30 H 1.08993 * 109.47326 * 59.99785 * 1 2 3 31 31 H 1.08997 * 109.47070 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46731 * 299.99948 * 1 2 3 33 33 H 1.08998 * 109.46731 * 240.00052 * 2 1 3 34 34 H 1.08993 * 109.47326 * 120.00215 * 2 1 3 35 35 H 1.08999 * 109.47033 * 299.99461 * 5 3 2 36 36 H 1.08997 * 109.47117 * 60.00124 * 5 3 2 37 37 H 1.09006 * 109.46894 * 180.02562 * 5 3 2 38 38 H 1.09003 * 109.47359 * 54.99728 * 6 3 2 39 39 H 1.09000 * 109.47340 * 294.99945 * 6 3 2 40 40 H 1.08996 * 109.47211 * 90.00226 * 9 8 7 41 41 H 1.09004 * 109.46865 * 210.00417 * 9 8 7 42 42 H 1.09002 * 109.47307 * 329.99863 * 9 8 7 43 43 H 1.08999 * 109.46847 * 299.99088 * 15 14 13 44 44 H 1.08991 * 109.47460 * 59.99590 * 15 14 13 45 45 H 1.09004 * 109.47062 * 299.99513 * 16 15 14 46 46 H 1.09005 * 109.47599 * 59.99592 * 16 15 14 47 47 H 0.96997 * 119.99501 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4443 -0.1258 7 6 4.0570 2.8633 -0.2493 8 6 4.1974 3.4678 -1.4130 9 6 3.8908 2.8312 -2.7441 10 16 4.7865 5.1069 -1.2127 11 6 4.8391 4.9455 0.5380 12 7 5.2082 5.8239 1.4913 13 6 5.1776 5.5095 2.7641 14 16 5.6746 6.7065 3.9578 15 6 6.0913 8.0870 2.8639 16 6 6.5627 9.2772 3.7017 17 6 6.9102 10.4265 2.7909 18 1 6.8050 10.3188 1.7215 19 6 7.3616 11.6157 3.3230 20 7 7.4893 11.7469 4.6254 21 14 7.7916 13.0404 2.1940 22 1 6.5922 13.4305 1.4103 23 1 8.2493 14.1957 3.0073 24 1 8.8759 12.6277 1.2671 25 7 4.7630 4.2796 3.1866 26 1 4.7456 4.0753 4.1347 27 6 4.3853 3.3457 2.2924 28 8 4.0207 2.2434 2.6640 29 6 4.4128 3.6703 0.9030 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.5490 2.1252 1.3969 36 1 2.0700 1.5875 2.1491 37 1 1.9983 3.1543 1.3071 38 1 3.8570 0.8800 -1.0115 39 1 4.0030 0.9836 0.7595 40 1 2.8492 3.0182 -3.0050 41 1 4.5394 3.2583 -3.5090 42 1 4.0624 1.7566 -2.6811 43 1 6.8867 7.7838 2.1831 44 1 5.2108 8.3738 2.2891 45 1 5.7670 9.5803 4.3823 46 1 7.4432 8.9908 4.2769 47 1 7.8071 12.5834 4.9996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012747087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:28 Heat of formation + Delta-G solvation = -21.445109 kcal Electronic energy + Delta-G solvation = -27939.386911 eV Core-core repulsion = 24145.570517 eV Total energy + Delta-G solvation = -3793.816395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.54961 -38.44106 -37.64149 -35.88464 -34.04572 -33.71924 -31.49348 -30.94928 -30.65397 -27.95359 -26.72686 -25.63787 -25.12983 -24.04315 -23.14986 -21.46562 -20.43636 -19.56523 -18.95485 -18.12142 -17.72295 -16.80879 -16.63786 -16.25668 -15.56928 -15.21578 -14.86729 -14.61390 -14.53341 -14.20230 -14.02159 -13.90633 -13.82678 -13.51243 -13.25381 -12.78438 -12.66153 -12.49452 -12.37498 -12.28420 -12.00359 -11.85531 -11.78192 -11.40304 -11.19252 -11.09760 -11.00748 -10.77369 -10.67988 -10.53184 -10.47409 -10.40968 -10.19665 -10.06994 -9.98913 -9.78186 -9.31336 -8.73171 -8.52459 -8.42994 -7.53000 -6.16938 -4.21746 0.11903 0.89329 1.18485 1.53721 1.78229 1.91942 2.31455 2.86125 3.26155 3.30858 3.33634 3.40020 4.26353 4.34516 4.41626 4.54870 4.73393 4.80446 4.85012 4.89760 5.07368 5.13771 5.19548 5.28002 5.33188 5.41029 5.44841 5.55604 5.60780 5.65066 5.74914 5.81732 5.83917 5.90872 5.93248 5.98788 6.02190 6.07269 6.13658 6.19583 6.28725 6.38759 6.51903 6.53872 7.35007 7.38984 7.40290 7.72725 7.77888 8.12718 8.82340 9.43149 10.93775 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.002246 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.497514 B =12464.782799 C =13668.589830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.077 4.077 4 H 0.065 0.935 5 C -0.146 4.146 6 C -0.062 4.062 7 C -0.023 4.023 8 C -0.213 4.213 9 C -0.076 4.076 10 S 0.186 5.814 11 C 0.105 3.895 12 N -0.509 5.509 13 C 0.383 3.617 14 S -0.019 6.019 15 C -0.072 4.072 16 C 0.033 3.967 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 N -0.627 5.627 26 H 0.423 0.577 27 C 0.567 3.433 28 O -0.521 6.521 29 C -0.245 4.245 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.029 0.971 46 H 0.029 0.971 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.632 -21.080 -10.274 25.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.096 4.096 4 H 0.083 0.917 5 C -0.203 4.203 6 C -0.101 4.101 7 C -0.034 4.034 8 C -0.330 4.330 9 C -0.134 4.134 10 S 0.451 5.549 11 C -0.133 4.133 12 N -0.238 5.238 13 C 0.006 3.994 14 S 0.218 5.782 15 C -0.220 4.220 16 C -0.006 4.006 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.142 4.142 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.200 1.200 25 N -0.272 5.272 26 H 0.262 0.738 27 C 0.361 3.639 28 O -0.399 6.399 29 C -0.265 4.265 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.186 -19.806 -10.280 24.132 hybrid contribution -0.287 -0.767 -0.161 0.835 sum -9.473 -20.573 -10.442 24.940 Atomic orbital electron populations 1.21810 0.96023 1.01273 1.01901 1.21558 0.95767 0.96327 1.01886 1.21024 0.93947 0.95947 0.98671 0.91676 1.21995 0.99924 1.00561 0.97835 1.20518 0.95604 0.90860 1.03167 1.18968 0.98507 0.96796 0.89094 1.23667 1.11865 0.98372 0.99113 1.20309 1.02026 1.00401 0.90701 1.84152 1.65951 1.10693 0.94093 1.23898 0.97474 0.92402 0.99511 1.68585 1.26852 1.31780 0.96634 1.25534 0.90536 0.87994 0.95290 1.86267 1.76362 1.07303 1.08230 1.24150 1.05242 0.93210 0.99428 1.19045 0.97269 0.89198 0.95135 1.20967 1.45228 0.96654 0.93176 0.92060 1.25005 0.95262 0.98724 0.95187 1.69944 1.45899 1.26464 1.10595 0.86536 0.78984 0.81362 0.80454 1.20037 1.21170 1.20040 1.44423 1.57871 1.12107 1.12848 0.73758 1.16495 0.77895 0.84012 0.85519 1.90883 1.47817 1.20457 1.80727 1.20378 1.16315 0.95820 0.93990 0.92941 0.93033 0.92464 0.92241 0.91823 0.93590 0.90854 0.93574 0.91090 0.89433 0.90788 0.91318 0.90336 0.88978 0.88993 0.95295 0.95290 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.12 -0.98 5.40 -26.73 -0.14 -1.12 16 3 C -0.08 -0.76 2.38 -90.62 -0.22 -0.98 16 4 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 5 C -0.15 -1.71 7.44 37.16 0.28 -1.44 16 6 C -0.06 -0.66 4.34 -27.88 -0.12 -0.78 16 7 C -0.02 -0.28 4.69 -103.80 -0.49 -0.77 16 8 C -0.21 -2.33 6.38 -36.21 -0.23 -2.56 16 9 C -0.08 -0.57 9.98 36.01 0.36 -0.21 16 10 S 0.19 2.30 23.20 -107.50 -2.49 -0.19 16 11 C 0.10 1.59 7.69 -15.85 -0.12 1.46 16 12 N -0.51 -8.25 9.12 -11.40 -0.10 -8.36 16 13 C 0.38 5.69 7.95 -88.50 -0.70 4.99 16 14 S -0.02 -0.29 22.18 -107.50 -2.38 -2.67 16 15 C -0.07 -1.36 4.75 37.16 0.18 -1.18 16 16 C 0.03 0.77 4.98 -27.88 -0.14 0.64 16 17 C -0.52 -13.64 9.11 -34.44 -0.31 -13.95 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 21 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 N -0.63 -8.34 5.29 -14.40 -0.08 -8.42 16 26 H 0.42 4.55 8.80 -40.82 -0.36 4.19 16 27 C 0.57 8.33 6.96 -14.57 -0.10 8.23 16 28 O -0.52 -8.05 12.96 5.00 0.06 -7.98 16 29 C -0.25 -3.56 4.95 -105.05 -0.52 -4.08 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 36 H 0.07 0.96 6.24 -51.93 -0.32 0.64 16 37 H 0.05 0.63 5.85 -51.93 -0.30 0.32 16 38 H 0.07 0.61 6.49 -51.93 -0.34 0.28 16 39 H 0.09 1.09 6.60 -51.93 -0.34 0.75 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.51 6.51 -51.93 -0.34 0.17 16 43 H 0.09 1.74 8.11 -51.92 -0.42 1.32 16 44 H 0.09 1.74 8.11 -51.92 -0.42 1.32 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 398.19 15.07 6.00 6.00 Total: -1.00 -29.00 398.19 -12.18 -41.17 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.88 Total: 0.33 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.02 Total: -11.01 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.56 Total: -41.25 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.06 Total: -7.98 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -4.88 Total: -2.86 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.00 -12.18 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012747087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.728 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds