Wall clock time and date at job start Tue Mar 31 2020 05:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47270 * 2 1 4 4 H 1.08994 * 109.47345 * 55.00489 * 3 2 1 5 5 C 1.52994 * 109.47234 * 294.99885 * 3 2 1 6 6 C 1.53007 * 109.47173 * 175.00043 * 3 2 1 7 7 C 1.50694 * 109.47208 * 184.99977 * 6 3 2 8 8 C 1.31875 * 122.59304 * 269.97711 * 7 6 3 9 9 C 1.50699 * 124.34529 * 359.97438 * 8 7 6 10 10 S 1.75329 * 111.31381 * 180.02562 * 8 7 6 11 11 C 1.75892 * 92.17537 * 0.02562 * 10 8 7 12 12 N 1.34790 * 130.72574 * 179.97438 * 11 10 8 13 13 C 1.31140 * 121.58995 * 180.02562 * 12 11 10 14 14 S 1.76205 * 119.21093 * 180.02562 * 13 12 11 15 15 C 1.80995 * 99.99924 * 359.97438 * 14 13 12 16 16 C 1.52994 * 109.47234 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47550 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00467 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00368 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 119.99826 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47274 * 89.99693 * 21 19 17 23 23 H 1.48492 * 109.46925 * 210.00299 * 21 19 17 24 24 H 1.48505 * 109.46774 * 329.99811 * 21 19 17 25 25 N 1.36491 * 121.57431 * 359.74179 * 13 12 11 26 26 H 0.97000 * 119.85482 * 180.28613 * 25 13 12 27 27 C 1.34705 * 120.28796 * 0.51950 * 25 13 12 28 28 O 1.21913 * 120.55528 * 179.77014 * 27 25 13 29 29 C 1.39319 * 109.60745 * 0.02562 * 11 10 8 30 30 H 1.08994 * 109.47014 * 59.99785 * 1 2 3 31 31 H 1.09006 * 109.47212 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46536 * 299.99889 * 1 2 3 33 33 H 1.09007 * 109.46985 * 239.99935 * 2 1 3 34 34 H 1.09003 * 109.47172 * 120.00759 * 2 1 3 35 35 H 1.09003 * 109.47716 * 300.00620 * 5 3 2 36 36 H 1.09005 * 109.47200 * 60.00093 * 5 3 2 37 37 H 1.09004 * 109.47534 * 180.02562 * 5 3 2 38 38 H 1.08999 * 109.47033 * 65.00089 * 6 3 2 39 39 H 1.08997 * 109.46907 * 305.00343 * 6 3 2 40 40 H 1.08998 * 109.47454 * 180.02562 * 9 8 7 41 41 H 1.09005 * 109.46862 * 300.01747 * 9 8 7 42 42 H 1.09000 * 109.47093 * 60.01322 * 9 8 7 43 43 H 1.09002 * 109.47369 * 299.99963 * 15 14 13 44 44 H 1.09007 * 109.47583 * 60.00037 * 15 14 13 45 45 H 1.09008 * 109.47117 * 299.99574 * 16 15 14 46 46 H 1.08997 * 109.47340 * 59.99654 * 16 15 14 47 47 H 0.97003 * 120.00048 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4442 0.1257 7 6 4.0571 2.8632 0.2492 8 6 4.3806 3.5965 -0.7980 9 6 4.3025 3.1210 -2.2258 10 16 4.9146 5.1954 -0.3158 11 6 4.6818 4.8322 1.3894 12 7 4.8823 5.5906 2.4854 13 6 4.6467 5.1315 3.6910 14 16 4.9301 6.1777 5.0802 15 6 5.5084 7.6708 4.2364 16 6 5.8263 8.7512 5.2720 17 6 6.3072 9.9947 4.5694 18 1 6.3794 10.0125 3.4920 19 6 6.6551 11.1097 5.3020 20 7 7.0753 12.1946 4.6890 21 14 6.5296 11.0793 7.1657 22 1 7.8145 10.6065 7.7407 23 1 6.2375 12.4471 7.6644 24 1 5.4369 10.1599 7.5732 25 7 4.1819 3.8645 3.8951 26 1 4.0123 3.5519 4.7975 27 6 3.9623 3.0447 2.8490 28 8 3.5512 1.9107 3.0259 29 6 4.2138 3.5275 1.5298 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 2.0698 1.5874 -2.1492 36 1 0.5490 2.1252 -1.3969 37 1 1.9991 3.1540 -1.3075 38 1 4.0030 0.9835 -0.7597 39 1 3.8571 0.8799 1.0113 40 1 4.6258 3.9199 -2.8931 41 1 4.9507 2.2543 -2.3561 42 1 3.2747 2.8446 -2.4610 43 1 6.4075 7.4401 3.6650 44 1 4.7316 8.0310 3.5618 45 1 4.9274 8.9822 5.8438 46 1 6.6032 8.3909 5.9463 47 1 7.3197 12.9792 5.2044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012747093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:31 Heat of formation + Delta-G solvation = -13.657788 kcal Electronic energy + Delta-G solvation = -27833.869454 eV Core-core repulsion = 24040.390743 eV Total energy + Delta-G solvation = -3793.478711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56172 -38.64703 -37.67478 -35.90048 -34.08927 -33.73891 -31.68054 -31.28595 -30.45936 -28.58755 -26.46884 -25.86573 -25.17687 -24.14471 -23.18172 -21.15387 -20.51430 -19.65129 -18.99054 -18.17125 -17.64072 -17.12790 -16.83646 -16.23825 -15.68066 -15.41840 -14.97822 -14.69974 -14.49875 -14.31206 -14.25113 -13.82022 -13.62328 -13.35604 -13.33064 -12.99761 -12.87020 -12.58907 -12.54752 -12.37652 -12.16246 -11.99246 -11.90371 -11.44651 -11.31865 -11.12018 -10.96799 -10.83803 -10.69073 -10.56102 -10.51632 -10.34197 -10.18200 -10.10621 -10.08528 -9.85680 -9.40152 -8.80287 -8.69728 -8.47263 -7.60118 -6.19144 -4.20721 0.07190 0.81959 1.13203 1.49446 1.75970 1.88175 2.19775 2.78512 3.21213 3.29756 3.30475 3.35220 4.22832 4.31107 4.37127 4.52671 4.66840 4.75579 4.82708 4.89297 5.06454 5.11955 5.13311 5.27586 5.30857 5.33170 5.35010 5.47544 5.57212 5.60242 5.71908 5.72394 5.76393 5.80124 5.83180 5.88227 5.91082 5.95041 6.11020 6.16408 6.20570 6.25963 6.34957 6.44415 6.88406 6.99417 7.32958 7.51651 7.65487 8.32836 8.83419 9.39590 10.93217 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.002234 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.415940 B =12532.104315 C =13666.681765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.079 4.079 4 H 0.070 0.930 5 C -0.157 4.157 6 C -0.060 4.060 7 C -0.026 4.026 8 C -0.208 4.208 9 C -0.093 4.093 10 S 0.193 5.807 11 C 0.103 3.897 12 N -0.506 5.506 13 C 0.384 3.616 14 S -0.027 6.027 15 C -0.064 4.064 16 C -0.002 4.002 17 C -0.521 4.521 18 H 0.078 0.922 19 C 0.073 3.927 20 N -0.894 5.894 21 Si 0.877 3.123 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.264 1.264 25 N -0.626 5.626 26 H 0.422 0.578 27 C 0.568 3.432 28 O -0.526 6.526 29 C -0.245 4.245 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.028 0.972 46 H 0.024 0.976 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 -22.265 -10.744 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.098 4.098 4 H 0.088 0.912 5 C -0.214 4.214 6 C -0.099 4.099 7 C -0.037 4.037 8 C -0.325 4.325 9 C -0.151 4.151 10 S 0.459 5.541 11 C -0.135 4.135 12 N -0.235 5.235 13 C 0.007 3.993 14 S 0.210 5.790 15 C -0.212 4.212 16 C -0.042 4.042 17 C -0.560 4.560 18 H 0.096 0.904 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.704 3.296 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.189 1.189 25 N -0.272 5.272 26 H 0.262 0.738 27 C 0.362 3.638 28 O -0.403 6.403 29 C -0.265 4.265 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.046 0.954 46 H 0.042 0.958 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.514 -20.916 -10.688 24.984 hybrid contribution -0.526 -1.506 1.094 1.934 sum -9.040 -22.422 -9.594 26.010 Atomic orbital electron populations 1.21813 0.96036 1.01309 1.01854 1.21545 0.95761 0.96235 1.01928 1.21022 0.94231 0.96164 0.98341 0.91170 1.22214 1.01160 1.00959 0.97045 1.20469 0.95244 0.91090 1.03130 1.18966 0.98997 0.97090 0.88641 1.23693 1.11206 0.97874 0.99702 1.20720 1.04293 1.01326 0.88752 1.84237 1.66068 1.11759 0.92083 1.23902 0.97884 0.92832 0.98857 1.68569 1.27146 1.33157 0.94592 1.25354 0.89949 0.86025 0.97940 1.86118 1.78612 1.11149 1.03159 1.23924 1.04931 0.90568 1.01785 1.19499 0.97436 0.93047 0.94170 1.20842 1.44972 0.94704 0.95526 0.90372 1.24958 0.94270 0.95191 0.98591 1.69882 1.44012 1.03269 1.36031 0.86821 0.79156 0.77695 0.85947 1.20014 1.21069 1.18899 1.44399 1.57886 1.12270 1.12623 0.73764 1.16526 0.78336 0.84921 0.84053 1.90913 1.46670 1.17380 1.85339 1.20410 1.16162 0.95643 0.94296 0.92601 0.93010 0.92833 0.92167 0.91795 0.92413 0.92692 0.91880 0.91069 0.89531 0.91521 0.90652 0.88976 0.88399 0.88378 0.95363 0.95797 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 37.16 0.36 -0.82 16 2 C -0.12 -0.98 5.40 -26.73 -0.14 -1.13 16 3 C -0.08 -0.76 2.38 -90.62 -0.22 -0.98 16 4 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 5 C -0.16 -1.26 7.15 37.15 0.27 -1.00 16 6 C -0.06 -0.63 4.34 -27.88 -0.12 -0.75 16 7 C -0.03 -0.32 4.79 -103.80 -0.50 -0.81 16 8 C -0.21 -2.23 5.39 -36.21 -0.20 -2.42 16 9 C -0.09 -0.69 9.02 36.01 0.32 -0.36 16 10 S 0.19 2.37 23.19 -107.50 -2.49 -0.12 16 11 C 0.10 1.54 7.69 -15.85 -0.12 1.42 16 12 N -0.51 -8.05 9.12 -11.40 -0.10 -8.16 16 13 C 0.38 5.54 7.95 -88.50 -0.70 4.83 16 14 S -0.03 -0.39 22.18 -107.50 -2.38 -2.77 16 15 C -0.06 -1.15 4.75 37.15 0.18 -0.98 16 16 C 0.00 -0.04 4.04 -27.88 -0.11 -0.15 16 17 C -0.52 -13.80 9.66 -34.44 -0.33 -14.13 16 18 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 20 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 21 Si 0.88 20.36 27.47 -169.99 -4.67 15.69 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 25 N -0.63 -8.15 5.29 -14.40 -0.08 -8.23 16 26 H 0.42 4.39 8.80 -40.82 -0.36 4.03 16 27 C 0.57 8.40 7.79 -14.57 -0.11 8.29 16 28 O -0.53 -8.41 15.96 5.00 0.08 -8.33 16 29 C -0.25 -3.56 6.06 -105.04 -0.64 -4.19 16 30 H 0.05 0.39 6.56 -51.93 -0.34 0.05 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.38 7.06 -51.93 -0.37 0.01 16 36 H 0.05 0.42 6.57 -51.93 -0.34 0.08 16 37 H 0.06 0.56 5.50 -51.93 -0.29 0.28 16 38 H 0.07 0.62 7.21 -51.93 -0.37 0.24 16 39 H 0.09 1.08 6.60 -51.93 -0.34 0.73 16 40 H 0.07 0.44 8.13 -51.93 -0.42 0.01 16 41 H 0.07 0.49 7.85 -51.93 -0.41 0.08 16 42 H 0.09 0.60 3.98 -51.93 -0.21 0.39 16 43 H 0.10 1.80 8.11 -51.92 -0.42 1.38 16 44 H 0.10 1.80 8.11 -51.91 -0.42 1.38 16 45 H 0.03 0.61 7.20 -51.92 -0.37 0.23 16 46 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 47 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 395.73 15.07 5.96 5.96 Total: -1.00 -30.07 395.73 -11.83 -41.90 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.76 Total: 0.82 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -2.17 Total: -11.28 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.59 Total: -41.87 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.08 Total: -8.33 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -4.88 Total: -2.89 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.07 -11.83 -41.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012747093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.247 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds