Wall clock time and date at job start Tue Mar 31 2020 05:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47270 * 2 1 4 4 H 1.08994 * 109.47345 * 55.00489 * 3 2 1 5 5 C 1.52994 * 109.47234 * 294.99885 * 3 2 1 6 6 C 1.53007 * 109.47173 * 175.00043 * 3 2 1 7 7 C 1.50694 * 109.47208 * 184.99977 * 6 3 2 8 8 C 1.31875 * 122.59304 * 269.97711 * 7 6 3 9 9 C 1.50699 * 124.34529 * 359.97438 * 8 7 6 10 10 S 1.75329 * 111.31381 * 180.02562 * 8 7 6 11 11 C 1.75892 * 92.17537 * 0.02562 * 10 8 7 12 12 N 1.34790 * 130.72574 * 179.97438 * 11 10 8 13 13 C 1.31140 * 121.58995 * 180.02562 * 12 11 10 14 14 S 1.76205 * 119.21093 * 180.02562 * 13 12 11 15 15 C 1.80995 * 99.99924 * 359.97438 * 14 13 12 16 16 C 1.52994 * 109.47234 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47550 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00467 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00368 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 119.99826 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47274 * 89.99693 * 21 19 17 23 23 H 1.48492 * 109.46925 * 210.00299 * 21 19 17 24 24 H 1.48505 * 109.46774 * 329.99811 * 21 19 17 25 25 N 1.36491 * 121.57431 * 359.74179 * 13 12 11 26 26 H 0.97000 * 119.85482 * 180.28613 * 25 13 12 27 27 C 1.34705 * 120.28796 * 0.51950 * 25 13 12 28 28 O 1.21913 * 120.55528 * 179.77014 * 27 25 13 29 29 C 1.39319 * 109.60745 * 0.02562 * 11 10 8 30 30 H 1.08994 * 109.47014 * 59.99785 * 1 2 3 31 31 H 1.09006 * 109.47212 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46536 * 299.99889 * 1 2 3 33 33 H 1.09007 * 109.46985 * 239.99935 * 2 1 3 34 34 H 1.09003 * 109.47172 * 120.00759 * 2 1 3 35 35 H 1.09003 * 109.47716 * 300.00620 * 5 3 2 36 36 H 1.09005 * 109.47200 * 60.00093 * 5 3 2 37 37 H 1.09004 * 109.47534 * 180.02562 * 5 3 2 38 38 H 1.08999 * 109.47033 * 65.00089 * 6 3 2 39 39 H 1.08997 * 109.46907 * 305.00343 * 6 3 2 40 40 H 1.08998 * 109.47454 * 180.02562 * 9 8 7 41 41 H 1.09005 * 109.46862 * 300.01747 * 9 8 7 42 42 H 1.09000 * 109.47093 * 60.01322 * 9 8 7 43 43 H 1.09002 * 109.47369 * 299.99963 * 15 14 13 44 44 H 1.09007 * 109.47583 * 60.00037 * 15 14 13 45 45 H 1.09008 * 109.47117 * 299.99574 * 16 15 14 46 46 H 1.08997 * 109.47340 * 59.99654 * 16 15 14 47 47 H 0.97003 * 120.00048 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4442 0.1257 7 6 4.0571 2.8632 0.2492 8 6 4.3806 3.5965 -0.7980 9 6 4.3025 3.1210 -2.2258 10 16 4.9146 5.1954 -0.3158 11 6 4.6818 4.8322 1.3894 12 7 4.8823 5.5906 2.4854 13 6 4.6467 5.1315 3.6910 14 16 4.9301 6.1777 5.0802 15 6 5.5084 7.6708 4.2364 16 6 5.8263 8.7512 5.2720 17 6 6.3072 9.9947 4.5694 18 1 6.3794 10.0125 3.4920 19 6 6.6551 11.1097 5.3020 20 7 7.0753 12.1946 4.6890 21 14 6.5296 11.0793 7.1657 22 1 7.8145 10.6065 7.7407 23 1 6.2375 12.4471 7.6644 24 1 5.4369 10.1599 7.5732 25 7 4.1819 3.8645 3.8951 26 1 4.0123 3.5519 4.7975 27 6 3.9623 3.0447 2.8490 28 8 3.5512 1.9107 3.0259 29 6 4.2138 3.5275 1.5298 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 2.0698 1.5874 -2.1492 36 1 0.5490 2.1252 -1.3969 37 1 1.9991 3.1540 -1.3075 38 1 4.0030 0.9835 -0.7597 39 1 3.8571 0.8799 1.0113 40 1 4.6258 3.9199 -2.8931 41 1 4.9507 2.2543 -2.3561 42 1 3.2747 2.8446 -2.4610 43 1 6.4075 7.4401 3.6650 44 1 4.7316 8.0310 3.5618 45 1 4.9274 8.9822 5.8438 46 1 6.6032 8.3909 5.9463 47 1 7.3197 12.9792 5.2044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012747093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:30 Heat of formation + Delta-G solvation = -29.306167 kcal Electronic energy + Delta-G solvation = -27834.548019 eV Core-core repulsion = 24040.390743 eV Total energy + Delta-G solvation = -3794.157276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.66832 -39.50648 -38.84771 -36.73671 -35.82056 -34.93690 -33.34691 -32.48357 -31.16375 -29.39813 -27.69872 -27.23139 -26.36400 -24.97643 -24.11854 -22.89080 -21.30298 -20.56103 -20.16101 -19.28804 -19.12731 -18.65945 -17.86399 -17.35332 -16.75144 -16.42139 -16.18078 -15.82519 -15.74668 -15.67777 -15.12051 -15.03516 -14.78450 -14.68394 -14.37565 -14.12769 -13.82703 -13.71065 -13.38685 -13.32901 -13.18942 -13.05186 -12.86421 -12.60273 -12.35004 -12.20977 -12.15216 -11.97913 -11.90207 -11.76307 -11.71249 -11.49093 -11.34581 -11.32408 -11.27737 -11.18402 -11.06051 -10.77884 -9.89586 -9.49452 -8.68921 -8.29391 -6.35952 -1.01900 -0.32861 0.06728 0.36773 0.80115 0.86853 0.89357 1.39766 1.41292 1.51826 1.66979 2.23012 2.36324 3.05692 3.16906 3.32287 3.64190 3.86527 3.97105 4.04438 4.08270 4.18170 4.21206 4.36558 4.37161 4.55486 4.62153 4.68285 4.72997 4.73590 4.81451 4.82577 4.93239 4.96662 4.98796 5.12402 5.13429 5.20213 5.20594 5.23961 5.26217 5.27099 5.28358 5.47038 5.53849 5.54668 5.61917 6.19748 6.22411 6.53396 6.71134 7.27981 8.86570 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.002234 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.415940 B =12532.104315 C =13666.681765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.075 4.075 4 H 0.037 0.963 5 C -0.153 4.153 6 C -0.053 4.053 7 C -0.047 4.047 8 C -0.184 4.184 9 C -0.096 4.096 10 S 0.200 5.800 11 C 0.071 3.929 12 N -0.526 5.526 13 C 0.375 3.625 14 S 0.032 5.968 15 C -0.068 4.068 16 C 0.001 3.999 17 C -0.528 4.528 18 H 0.038 0.962 19 C 0.009 3.991 20 N -0.946 5.946 21 Si 0.946 3.054 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.240 1.240 25 N -0.615 5.615 26 H 0.434 0.566 27 C 0.563 3.437 28 O -0.543 6.543 29 C -0.253 4.253 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.037 0.963 46 H 0.036 0.964 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.794 -24.513 -11.067 28.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.094 4.094 4 H 0.056 0.944 5 C -0.210 4.210 6 C -0.093 4.093 7 C -0.057 4.057 8 C -0.302 4.302 9 C -0.154 4.154 10 S 0.465 5.535 11 C -0.166 4.166 12 N -0.255 5.255 13 C -0.003 4.003 14 S 0.268 5.732 15 C -0.217 4.217 16 C -0.038 4.038 17 C -0.568 4.568 18 H 0.056 0.944 19 C -0.189 4.189 20 N -0.586 5.586 21 Si 0.769 3.231 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.163 1.163 25 N -0.261 5.261 26 H 0.276 0.724 27 C 0.357 3.643 28 O -0.422 6.422 29 C -0.273 4.273 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.125 0.875 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.332 -23.181 -11.010 27.307 hybrid contribution -0.287 -0.878 1.011 1.370 sum -9.619 -24.059 -9.999 27.773 Atomic orbital electron populations 1.21808 0.95514 1.01919 1.01664 1.21524 0.96205 0.95319 1.02140 1.20967 0.93497 0.96797 0.98140 0.94401 1.22190 1.01677 1.00440 0.96697 1.20451 0.95859 0.89836 1.03149 1.19163 1.00354 0.98171 0.88047 1.24142 1.08534 0.96374 1.01113 1.20929 1.05701 1.02399 0.86342 1.84191 1.65602 1.13097 0.90592 1.24186 0.99407 0.93320 0.99660 1.68504 1.27490 1.34096 0.95397 1.25329 0.90607 0.86478 0.97846 1.85706 1.78386 1.08060 1.01056 1.23530 1.04609 0.92437 1.01108 1.19345 0.97747 0.92069 0.94644 1.21174 1.44392 0.97050 0.94156 0.94409 1.25950 0.93968 0.94687 1.04268 1.70046 1.45973 1.04305 1.38264 0.85726 0.80220 0.78100 0.79102 1.18988 1.21160 1.16326 1.44211 1.57257 1.11615 1.13045 0.72384 1.16677 0.78230 0.84824 0.84595 1.90902 1.47603 1.18010 1.85652 1.20739 1.15582 0.95810 0.95146 0.91626 0.92012 0.94194 0.90267 0.93224 0.90100 0.92199 0.92794 0.88580 0.91818 0.90261 0.88811 0.87490 0.89322 0.89344 0.94497 0.94619 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 71.98 0.70 -1.43 16 2 C -0.11 -1.75 5.40 30.59 0.17 -1.59 16 3 C -0.08 -1.37 2.38 -10.80 -0.03 -1.40 16 4 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 5 C -0.15 -2.09 7.15 71.98 0.51 -1.58 16 6 C -0.05 -1.06 4.34 29.85 0.13 -0.93 16 7 C -0.05 -1.11 4.79 -18.92 -0.09 -1.20 16 8 C -0.18 -3.63 5.39 24.86 0.13 -3.50 16 9 C -0.10 -1.10 9.02 71.24 0.64 -0.46 16 10 S 0.20 4.79 23.19 -56.49 -1.31 3.48 16 11 C 0.07 2.13 7.69 84.50 0.65 2.78 16 12 N -0.53 -16.94 9.12 -189.98 -1.73 -18.67 16 13 C 0.37 10.68 7.95 179.61 1.43 12.11 16 14 S 0.03 0.86 22.18 -56.49 -1.25 -0.39 16 15 C -0.07 -2.45 4.75 71.98 0.34 -2.11 16 16 C 0.00 0.06 4.04 29.85 0.12 0.18 16 17 C -0.53 -28.72 9.66 25.60 0.25 -28.48 16 18 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 19 C 0.01 0.51 5.47 84.65 0.46 0.97 16 20 N -0.95 -57.35 13.96 21.45 0.30 -57.05 16 21 Si 0.95 41.52 27.47 68.60 1.88 43.40 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 25 N -0.61 -15.82 5.29 -317.64 -1.68 -17.50 16 26 H 0.43 8.68 8.80 -92.71 -0.82 7.86 16 27 C 0.56 16.78 7.79 85.37 0.67 17.44 16 28 O -0.54 -17.63 15.96 -5.03 -0.08 -17.71 16 29 C -0.25 -7.35 6.06 -20.14 -0.12 -7.47 16 30 H 0.06 0.78 6.56 -2.39 -0.02 0.77 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.92 8.14 -2.38 -0.02 0.91 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 0.74 7.06 -2.39 -0.02 0.72 16 36 H 0.06 0.77 6.57 -2.38 -0.02 0.75 16 37 H 0.05 0.84 5.50 -2.38 -0.01 0.83 16 38 H 0.10 1.39 7.21 -2.39 -0.02 1.37 16 39 H 0.06 1.58 6.60 -2.39 -0.02 1.56 16 40 H 0.08 0.76 8.13 -2.39 -0.02 0.74 16 41 H 0.09 0.83 7.85 -2.38 -0.02 0.81 16 42 H 0.11 0.98 3.98 -2.39 -0.01 0.97 16 43 H 0.09 3.33 8.11 -2.39 -0.02 3.31 16 44 H 0.09 3.33 8.11 -2.39 -0.02 3.31 16 45 H 0.04 1.51 7.20 -2.38 -0.02 1.49 16 46 H 0.04 1.44 7.57 -2.39 -0.02 1.42 16 47 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -67.84 395.73 2.23 -65.62 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.14 Total: 15.47 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 5.96 Total: -16.65 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -3.11 Total: -93.23 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.08 Total: -17.71 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.88 Total: 43.40 kcal Atomic # 16 Polarization: 5.66 SS G_CDS: -2.56 Total: 3.10 kcal Total: -67.84 2.23 -65.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012747093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.309 kcal (2) G-P(sol) polarization free energy of solvation -67.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds