Wall clock time and date at job start Tue Mar 31 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31266 * 1 3 3 Si 1.86802 * 119.99907 * 2 1 4 4 H 1.48492 * 109.47210 * 240.00020 * 3 2 1 5 5 H 1.48502 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46700 * 119.99670 * 3 2 1 7 7 C 1.39071 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99770 * 199.51893 * 7 2 1 9 9 N 1.37098 * 120.00255 * 19.51574 * 7 2 1 10 10 C 1.35341 * 119.71822 * 41.14221 * 9 7 2 11 11 O 1.21729 * 121.28295 * 0.25178 * 10 9 7 12 12 C 1.46956 * 117.43204 * 179.97438 * 10 9 7 13 13 C 1.39373 * 121.91353 * 180.02562 * 12 10 9 14 14 C 1.37793 * 119.51625 * 179.97438 * 13 12 10 15 15 C 1.38867 * 120.57464 * 359.97438 * 14 13 12 16 16 C 1.37718 * 120.82671 * 359.97438 * 15 14 13 17 17 C 1.39631 * 119.68891 * 0.04045 * 16 15 14 18 18 N 1.35637 * 121.61554 * 180.02562 * 17 16 15 19 19 C 1.29821 * 121.62337 * 179.97438 * 18 17 16 20 20 C 1.50706 * 118.34756 * 180.02562 * 19 18 17 21 21 N 1.46901 * 109.47297 * 359.97438 * 20 19 18 22 22 C 1.46986 * 110.99914 * 190.38769 * 21 20 19 23 23 C 1.53347 * 109.09233 * 163.95580 * 22 21 20 24 24 C 1.51412 * 108.07905 * 48.80559 * 23 22 21 25 25 S 1.75600 * 125.99443 * 164.46916 * 24 23 22 26 26 C 1.75787 * 91.03967 * 180.02562 * 25 24 23 27 27 C 1.33020 * 109.60364 * 359.97438 * 26 25 24 28 28 C 1.34794 * 123.96297 * 344.50755 * 24 23 22 29 29 C 1.46905 * 110.99991 * 66.04750 * 21 20 19 30 30 H 0.97004 * 119.99857 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.23569 * 0.02562 * 13 12 10 32 32 H 1.07998 * 119.71006 * 179.97438 * 14 13 12 33 33 H 1.07999 * 119.58695 * 180.02562 * 15 14 13 34 34 H 1.07999 * 120.14993 * 180.02562 * 16 15 14 35 35 H 1.09001 * 109.47550 * 120.00067 * 20 19 18 36 36 H 1.09000 * 109.46750 * 239.99855 * 20 19 18 37 37 H 1.08993 * 109.53335 * 283.83118 * 22 21 20 38 38 H 1.09000 * 109.53349 * 44.07104 * 22 21 20 39 39 H 1.09007 * 109.72456 * 289.16993 * 23 22 21 40 40 H 1.09003 * 109.79672 * 168.48637 * 23 22 21 41 41 H 1.08000 * 125.19515 * 179.97438 * 26 25 24 42 42 H 1.08001 * 122.16639 * 180.02562 * 27 26 25 43 43 H 1.09001 * 109.60957 * 296.58704 * 29 21 20 44 44 H 1.09002 * 109.60749 * 57.09436 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 3.1003 1.6965 -1.2124 5 1 1.2816 2.7465 0.0006 6 1 3.1003 1.6964 1.2126 7 6 2.0080 -1.2044 -0.0005 8 1 3.0414 -1.2314 0.3120 9 7 1.3815 -2.3574 -0.3977 10 6 0.5542 -2.3369 -1.4685 11 8 0.3556 -1.3118 -2.0943 12 6 -0.0903 -3.6011 -1.8505 13 6 -0.9586 -3.6865 -2.9374 14 6 -1.5354 -4.8977 -3.2520 15 6 -1.2581 -6.0295 -2.4967 16 6 -0.4023 -5.9669 -1.4195 17 6 0.1946 -4.7510 -1.0803 18 7 1.0437 -4.6450 -0.0279 19 6 1.5991 -3.5147 0.2874 20 6 2.5314 -3.4811 1.4710 21 7 2.6229 -4.8235 2.0607 22 6 3.3209 -4.7844 3.3536 23 6 3.0486 -6.0901 4.1102 24 6 3.3041 -7.2438 3.1635 25 16 3.5107 -8.9269 3.6198 26 6 3.7314 -9.3889 1.9381 27 6 3.6424 -8.3110 1.1637 28 6 3.4063 -7.1119 1.8259 29 6 3.2685 -5.7627 1.1338 30 1 -0.4850 0.8401 0.0004 31 1 -1.1770 -2.8099 -3.5292 32 1 -2.2090 -4.9674 -4.0933 33 1 -1.7188 -6.9708 -2.7577 34 1 -0.1940 -6.8540 -0.8399 35 1 3.5205 -3.1587 1.1455 36 1 2.1485 -2.7830 2.2153 37 1 4.3925 -4.6770 3.1861 38 1 2.9559 -3.9408 3.9394 39 1 2.0116 -6.1116 4.4456 40 1 3.7150 -6.1646 4.9697 41 1 3.9119 -10.3943 1.5874 42 1 3.7472 -8.3641 0.0901 43 1 2.6568 -5.8718 0.2383 44 1 4.2555 -5.3884 0.8622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014324813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:29 Heat of formation + Delta-G solvation = 74.888874 kcal Electronic energy + Delta-G solvation = -30801.118679 eV Core-core repulsion = 26810.609777 eV Total energy + Delta-G solvation = -3990.508902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.53707 -39.19025 -37.60654 -36.70990 -35.58087 -33.78316 -32.35217 -31.89888 -30.35562 -29.43948 -29.06310 -26.82295 -25.79950 -24.09281 -23.53187 -22.94237 -21.82958 -21.11109 -20.38864 -18.76838 -17.96263 -17.82564 -17.08859 -16.91724 -15.69672 -15.57595 -15.10347 -14.82885 -14.57035 -14.54662 -14.40107 -14.00742 -13.83062 -13.68627 -13.40733 -13.02742 -12.93631 -12.72262 -12.40847 -12.33336 -12.20759 -11.89875 -11.86243 -11.55870 -11.34427 -11.26182 -11.15524 -11.07688 -11.03837 -10.90102 -10.62618 -10.50983 -10.45496 -9.53054 -8.93184 -8.76060 -8.44877 -8.36007 -8.34448 -8.24742 -7.88559 -7.03885 -6.69589 -4.54517 1.12032 1.50953 1.68018 1.72167 2.08657 2.83736 3.02307 3.11611 3.12746 3.23491 3.68130 3.90540 3.99910 4.44599 4.67337 4.80397 4.87354 4.98964 5.13003 5.18681 5.32381 5.40546 5.42503 5.46363 5.50136 5.56948 5.64591 5.75817 5.78211 5.84858 5.86602 5.95744 6.08922 6.11610 6.13559 6.19215 6.30386 6.40884 6.49338 6.67769 6.78723 6.82461 7.03097 7.07195 7.14907 7.30577 7.39094 7.51710 7.60178 8.10975 8.45666 8.71053 9.18482 9.50702 10.31681 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.003665 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.855889 B = 7637.704601 C =10111.300727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.080 3.920 3 Si 0.928 3.072 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.386 4.386 8 H 0.107 0.893 9 N -0.351 5.351 10 C 0.520 3.480 11 O -0.503 6.503 12 C -0.209 4.209 13 C -0.039 4.039 14 C -0.176 4.176 15 C -0.090 4.090 16 C -0.130 4.130 17 C 0.167 3.833 18 N -0.544 5.544 19 C 0.361 3.639 20 C 0.126 3.874 21 N -0.515 5.515 22 C 0.058 3.942 23 C -0.039 4.039 24 C -0.170 4.170 25 S 0.071 5.929 26 C -0.221 4.221 27 C -0.116 4.116 28 C -0.093 4.093 29 C 0.114 3.886 30 H 0.281 0.719 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.160 0.840 42 H 0.137 0.863 43 H 0.122 0.878 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 -12.785 5.376 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.137 4.137 3 Si 0.753 3.247 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.513 4.513 8 H 0.124 0.876 9 N -0.054 5.054 10 C 0.315 3.685 11 O -0.377 6.377 12 C -0.217 4.217 13 C -0.058 4.058 14 C -0.195 4.195 15 C -0.110 4.110 16 C -0.150 4.150 17 C 0.051 3.949 18 N -0.272 5.272 19 C 0.098 3.902 20 C -0.003 4.003 21 N -0.239 5.239 22 C -0.072 4.072 23 C -0.078 4.078 24 C -0.287 4.287 25 S 0.336 5.664 26 C -0.356 4.356 27 C -0.148 4.148 28 C -0.105 4.105 29 C -0.015 4.015 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.055 0.945 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.178 0.822 42 H 0.154 0.846 43 H 0.140 0.860 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.381 -13.653 6.784 16.168 hybrid contribution 0.738 2.355 -2.059 3.214 sum 6.120 -11.298 4.725 13.690 Atomic orbital electron populations 1.69806 1.07180 1.29623 1.35902 1.25396 0.94963 1.00432 0.92957 0.85996 0.79415 0.80010 0.79287 1.19159 1.20444 1.19345 1.19523 0.96833 0.84198 1.50750 0.87593 1.42243 1.34332 1.08415 1.20416 1.18188 0.81712 0.88171 0.80469 1.90665 1.61032 1.33537 1.52416 1.20843 1.04920 0.94442 1.01478 1.20877 0.93068 0.97396 0.94504 1.20825 1.03847 0.92905 1.01967 1.20967 0.97232 0.97868 0.94956 1.20596 0.99502 0.96305 0.98571 1.18839 0.92886 0.92493 0.90672 1.68441 1.16933 1.22633 1.19178 1.22661 0.93606 0.83105 0.90845 1.20763 0.96164 0.89982 0.93358 1.61545 1.52189 1.07313 1.02858 1.22132 0.96440 0.97291 0.91299 1.20340 1.02453 0.89959 0.95091 1.24722 1.09456 0.96876 0.97661 1.83937 1.72407 1.01769 1.08270 1.25255 1.12081 1.02645 0.95613 1.19941 1.02407 0.91260 1.01144 1.19670 1.02497 0.96108 0.92247 1.21307 0.96920 0.86832 0.96469 0.90879 0.85977 0.86700 0.86593 0.85784 0.92444 0.87336 0.94517 0.89776 0.89519 0.90592 0.82220 0.84557 0.86016 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.80 11.55 55.50 0.64 -21.16 16 2 C 0.08 2.02 4.37 -17.48 -0.08 1.94 16 3 Si 0.93 19.34 29.60 -169.99 -5.03 14.31 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 7 C -0.39 -9.48 8.24 -14.89 -0.12 -9.60 16 8 H 0.11 2.33 7.06 -52.48 -0.37 1.96 16 9 N -0.35 -8.67 2.68 -59.56 -0.16 -8.83 16 10 C 0.52 13.77 6.92 -12.48 -0.09 13.68 16 11 O -0.50 -14.62 14.29 5.16 0.07 -14.55 16 12 C -0.21 -4.87 5.89 -104.78 -0.62 -5.49 16 13 C -0.04 -0.80 9.68 -39.32 -0.38 -1.18 16 14 C -0.18 -2.98 10.02 -39.51 -0.40 -3.38 16 15 C -0.09 -1.45 10.00 -39.54 -0.40 -1.84 16 16 C -0.13 -2.34 10.03 -39.25 -0.39 -2.73 16 17 C 0.17 3.57 6.63 -84.50 -0.56 3.01 16 18 N -0.54 -11.42 7.05 -8.10 -0.06 -11.47 16 19 C 0.36 7.74 7.24 -154.88 -1.12 6.61 16 20 C 0.13 2.18 4.08 -4.97 -0.02 2.16 16 21 N -0.52 -7.98 4.26 -236.24 -1.01 -8.98 16 22 C 0.06 0.72 5.57 -3.60 -0.02 0.70 16 23 C -0.04 -0.45 6.50 -27.35 -0.18 -0.62 16 24 C -0.17 -2.22 6.42 -35.18 -0.23 -2.44 16 25 S 0.07 0.80 23.32 -107.50 -2.51 -1.70 16 26 C -0.22 -2.46 11.21 28.92 0.32 -2.14 16 27 C -0.12 -1.46 10.02 -41.11 -0.41 -1.87 16 28 C -0.09 -1.31 5.84 -104.79 -0.61 -1.92 16 29 C 0.11 1.74 5.25 -4.20 -0.02 1.71 16 30 H 0.28 7.25 8.31 -40.82 -0.34 6.92 16 31 H 0.12 2.49 7.83 -52.49 -0.41 2.08 16 32 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 35 H 0.06 0.93 7.54 -51.93 -0.39 0.54 16 36 H 0.11 1.87 7.76 -51.93 -0.40 1.47 16 37 H 0.04 0.43 8.06 -51.93 -0.42 0.01 16 38 H 0.08 0.94 7.81 -51.93 -0.41 0.53 16 39 H 0.09 1.03 8.14 -51.92 -0.42 0.60 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.12 2.10 5.71 -51.93 -0.30 1.80 16 44 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -30.55 372.75 -12.96 -43.51 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.21 Total: 6.65 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -5.32 Total: -3.40 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.58 Total: -50.45 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.07 Total: -14.55 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.55 -12.96 -43.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014324813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.402 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds