Wall clock time and date at job start Tue Mar 31 2020 06:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31266 * 1 3 3 Si 1.86802 * 119.99907 * 2 1 4 4 H 1.48492 * 109.47210 * 240.00020 * 3 2 1 5 5 H 1.48502 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46700 * 119.99670 * 3 2 1 7 7 C 1.39071 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99770 * 199.51893 * 7 2 1 9 9 N 1.37098 * 120.00255 * 19.51574 * 7 2 1 10 10 C 1.35341 * 119.71822 * 41.14221 * 9 7 2 11 11 O 1.21729 * 121.28295 * 0.25178 * 10 9 7 12 12 C 1.46956 * 117.43204 * 179.97438 * 10 9 7 13 13 C 1.39373 * 121.91353 * 180.02562 * 12 10 9 14 14 C 1.37793 * 119.51625 * 179.97438 * 13 12 10 15 15 C 1.38867 * 120.57464 * 359.97438 * 14 13 12 16 16 C 1.37718 * 120.82671 * 359.97438 * 15 14 13 17 17 C 1.39631 * 119.68891 * 0.04045 * 16 15 14 18 18 N 1.35637 * 121.61554 * 180.02562 * 17 16 15 19 19 C 1.29821 * 121.62337 * 179.97438 * 18 17 16 20 20 C 1.50706 * 118.34756 * 180.02562 * 19 18 17 21 21 N 1.46901 * 109.47297 * 359.97438 * 20 19 18 22 22 C 1.46986 * 110.99914 * 190.38769 * 21 20 19 23 23 C 1.53347 * 109.09233 * 163.95580 * 22 21 20 24 24 C 1.51412 * 108.07905 * 48.80559 * 23 22 21 25 25 S 1.75600 * 125.99443 * 164.46916 * 24 23 22 26 26 C 1.75787 * 91.03967 * 180.02562 * 25 24 23 27 27 C 1.33020 * 109.60364 * 359.97438 * 26 25 24 28 28 C 1.34794 * 123.96297 * 344.50755 * 24 23 22 29 29 C 1.46905 * 110.99991 * 66.04750 * 21 20 19 30 30 H 0.97004 * 119.99857 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.23569 * 0.02562 * 13 12 10 32 32 H 1.07998 * 119.71006 * 179.97438 * 14 13 12 33 33 H 1.07999 * 119.58695 * 180.02562 * 15 14 13 34 34 H 1.07999 * 120.14993 * 180.02562 * 16 15 14 35 35 H 1.09001 * 109.47550 * 120.00067 * 20 19 18 36 36 H 1.09000 * 109.46750 * 239.99855 * 20 19 18 37 37 H 1.08993 * 109.53335 * 283.83118 * 22 21 20 38 38 H 1.09000 * 109.53349 * 44.07104 * 22 21 20 39 39 H 1.09007 * 109.72456 * 289.16993 * 23 22 21 40 40 H 1.09003 * 109.79672 * 168.48637 * 23 22 21 41 41 H 1.08000 * 125.19515 * 179.97438 * 26 25 24 42 42 H 1.08001 * 122.16639 * 180.02562 * 27 26 25 43 43 H 1.09001 * 109.60957 * 296.58704 * 29 21 20 44 44 H 1.09002 * 109.60749 * 57.09436 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 3.1003 1.6965 -1.2124 5 1 1.2816 2.7465 0.0006 6 1 3.1003 1.6964 1.2126 7 6 2.0080 -1.2044 -0.0005 8 1 3.0414 -1.2314 0.3120 9 7 1.3815 -2.3574 -0.3977 10 6 0.5542 -2.3369 -1.4685 11 8 0.3556 -1.3118 -2.0943 12 6 -0.0903 -3.6011 -1.8505 13 6 -0.9586 -3.6865 -2.9374 14 6 -1.5354 -4.8977 -3.2520 15 6 -1.2581 -6.0295 -2.4967 16 6 -0.4023 -5.9669 -1.4195 17 6 0.1946 -4.7510 -1.0803 18 7 1.0437 -4.6450 -0.0279 19 6 1.5991 -3.5147 0.2874 20 6 2.5314 -3.4811 1.4710 21 7 2.6229 -4.8235 2.0607 22 6 3.3209 -4.7844 3.3536 23 6 3.0486 -6.0901 4.1102 24 6 3.3041 -7.2438 3.1635 25 16 3.5107 -8.9269 3.6198 26 6 3.7314 -9.3889 1.9381 27 6 3.6424 -8.3110 1.1637 28 6 3.4063 -7.1119 1.8259 29 6 3.2685 -5.7627 1.1338 30 1 -0.4850 0.8401 0.0004 31 1 -1.1770 -2.8099 -3.5292 32 1 -2.2090 -4.9674 -4.0933 33 1 -1.7188 -6.9708 -2.7577 34 1 -0.1940 -6.8540 -0.8399 35 1 3.5205 -3.1587 1.1455 36 1 2.1485 -2.7830 2.2153 37 1 4.3925 -4.6770 3.1861 38 1 2.9559 -3.9408 3.9394 39 1 2.0116 -6.1116 4.4456 40 1 3.7150 -6.1646 4.9697 41 1 3.9119 -10.3943 1.5874 42 1 3.7472 -8.3641 0.0901 43 1 2.6568 -5.8718 0.2383 44 1 4.2555 -5.3884 0.8622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014324813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:28 Heat of formation + Delta-G solvation = 58.675096 kcal Electronic energy + Delta-G solvation = -30801.821761 eV Core-core repulsion = 26810.609777 eV Total energy + Delta-G solvation = -3991.211984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.22963 -40.29300 -39.20393 -38.27778 -36.86729 -35.52831 -33.70930 -33.44642 -31.92503 -30.76220 -30.28289 -28.16348 -27.60001 -25.32499 -24.68545 -24.42518 -23.19369 -22.60354 -21.63744 -20.50252 -19.49722 -18.95291 -18.54369 -18.03837 -17.45628 -16.85141 -16.64358 -16.17222 -16.12269 -15.77125 -15.65601 -15.43809 -15.34846 -15.11806 -14.69770 -14.62318 -14.00937 -13.99969 -13.82860 -13.64789 -13.57680 -13.53336 -13.08652 -12.96356 -12.85824 -12.58389 -12.52141 -12.49601 -12.25518 -12.21457 -12.05204 -11.87184 -11.45923 -11.24606 -10.77348 -10.44043 -10.18563 -9.90456 -9.35833 -9.29659 -8.97922 -8.76506 -8.51020 -6.46142 -0.08194 0.09908 0.19392 0.82393 1.17143 1.34817 1.44037 1.49309 1.55275 1.86272 2.01998 2.27514 2.44149 2.89810 3.04369 3.28712 3.41217 3.81723 3.86237 3.92497 4.05501 4.19194 4.22453 4.28041 4.35096 4.46459 4.49579 4.51538 4.57441 4.61245 4.64755 4.73978 4.85179 4.92003 4.97591 5.08823 5.16205 5.16371 5.20407 5.27449 5.37816 5.47433 5.56132 5.57892 5.74692 5.79935 6.00154 6.12361 6.22144 6.35034 6.64163 6.87448 7.43881 7.65625 8.47848 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.003665 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.855889 B = 7637.704601 C =10111.300727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.237 1.237 7 C -0.402 4.402 8 H 0.124 0.876 9 N -0.368 5.368 10 C 0.495 3.505 11 O -0.553 6.553 12 C -0.238 4.238 13 C -0.067 4.067 14 C -0.150 4.150 15 C -0.072 4.072 16 C -0.126 4.126 17 C 0.138 3.862 18 N -0.530 5.530 19 C 0.352 3.648 20 C 0.136 3.864 21 N -0.525 5.525 22 C 0.057 3.943 23 C -0.036 4.036 24 C -0.186 4.186 25 S 0.101 5.899 26 C -0.215 4.215 27 C -0.136 4.136 28 C -0.113 4.113 29 C 0.120 3.880 30 H 0.275 0.725 31 H 0.109 0.891 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.045 0.955 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.187 0.813 42 H 0.143 0.857 43 H 0.097 0.903 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.611 -16.170 6.265 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.179 4.179 3 Si 0.813 3.187 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.160 1.160 7 C -0.528 4.528 8 H 0.142 0.858 9 N -0.073 5.073 10 C 0.291 3.709 11 O -0.432 6.432 12 C -0.245 4.245 13 C -0.087 4.087 14 C -0.169 4.169 15 C -0.092 4.092 16 C -0.145 4.145 17 C 0.023 3.977 18 N -0.256 5.256 19 C 0.088 3.912 20 C 0.006 3.994 21 N -0.249 5.249 22 C -0.072 4.072 23 C -0.076 4.076 24 C -0.303 4.303 25 S 0.366 5.634 26 C -0.350 4.350 27 C -0.167 4.167 28 C -0.125 4.125 29 C -0.010 4.010 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.174 0.826 33 H 0.187 0.813 34 H 0.163 0.837 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.204 0.796 42 H 0.161 0.839 43 H 0.115 0.885 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.901 -17.119 7.711 19.681 hybrid contribution 0.496 3.046 -2.392 3.904 sum 6.397 -14.073 5.319 16.348 Atomic orbital electron populations 1.69934 1.09060 1.29807 1.39092 1.26388 0.95485 1.03884 0.92172 0.85048 0.78103 0.75576 0.79948 1.20025 1.20973 1.16045 1.19963 0.97640 0.84590 1.50655 0.85821 1.42347 1.34831 1.09377 1.20742 1.18841 0.82408 0.88887 0.80744 1.90588 1.63208 1.35200 1.54189 1.20997 1.06361 0.93883 1.03262 1.21009 0.94203 0.98978 0.94505 1.21325 1.02054 0.91343 1.02179 1.21547 0.95252 0.99491 0.92874 1.20963 0.98892 0.95417 0.99233 1.19306 0.93974 0.93385 0.90990 1.68562 1.16103 1.22198 1.18734 1.23450 0.93856 0.82175 0.91725 1.20711 0.95522 0.91327 0.91820 1.61518 1.53407 1.06083 1.03930 1.22246 0.96678 0.98498 0.89793 1.20388 1.02866 0.88880 0.95454 1.25002 1.09115 0.98514 0.97700 1.83832 1.71532 0.99983 1.08023 1.25622 1.10413 1.03487 0.95478 1.20048 1.03586 0.91232 1.01794 1.19684 1.04100 0.95853 0.92903 1.21104 0.96225 0.87859 0.95816 0.91531 0.87255 0.82569 0.81289 0.83657 0.91452 0.87481 0.93663 0.88655 0.89892 0.88015 0.79602 0.83938 0.88482 0.94695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.50 11.55 21.68 0.25 -49.25 16 2 C 0.03 1.71 4.37 84.98 0.37 2.08 16 3 Si 0.99 41.14 29.60 68.60 2.03 43.17 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.24 -8.55 7.11 99.48 0.71 -7.84 16 7 C -0.40 -20.66 8.24 84.07 0.69 -19.97 16 8 H 0.12 5.61 7.06 -2.91 -0.02 5.59 16 9 N -0.37 -19.23 2.68 -460.25 -1.23 -20.46 16 10 C 0.49 27.98 6.92 86.44 0.60 28.58 16 11 O -0.55 -34.76 14.29 -4.44 -0.06 -34.83 16 12 C -0.24 -11.55 5.89 -19.96 -0.12 -11.67 16 13 C -0.07 -2.81 9.68 22.44 0.22 -2.59 16 14 C -0.15 -4.64 10.02 22.32 0.22 -4.42 16 15 C -0.07 -1.99 10.00 22.30 0.22 -1.77 16 16 C -0.13 -4.22 10.03 22.48 0.23 -3.99 16 17 C 0.14 5.95 6.63 39.65 0.26 6.21 16 18 N -0.53 -22.66 7.05 -179.54 -1.27 -23.93 16 19 C 0.35 15.64 7.24 137.94 1.00 16.64 16 20 C 0.14 4.76 4.08 85.56 0.35 5.11 16 21 N -0.53 -16.08 4.26 -901.34 -3.84 -19.92 16 22 C 0.06 1.32 5.57 86.40 0.48 1.80 16 23 C -0.04 -0.77 6.50 30.19 0.20 -0.57 16 24 C -0.19 -4.49 6.42 25.12 0.16 -4.33 16 25 S 0.10 2.00 23.32 -56.49 -1.32 0.69 16 26 C -0.22 -4.19 11.21 66.66 0.75 -3.44 16 27 C -0.14 -3.18 10.02 21.29 0.21 -2.96 16 28 C -0.11 -3.04 5.84 -19.97 -0.12 -3.16 16 29 C 0.12 3.61 5.25 86.06 0.45 4.07 16 30 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.11 4.74 7.83 -2.91 -0.02 4.72 16 32 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.07 2.21 7.54 -2.39 -0.02 2.19 16 36 H 0.11 3.77 7.76 -2.39 -0.02 3.75 16 37 H 0.05 0.99 8.06 -2.39 -0.02 0.97 16 38 H 0.10 1.99 7.81 -2.39 -0.02 1.97 16 39 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.19 2.52 8.06 -2.91 -0.02 2.49 16 42 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 43 H 0.10 3.39 5.71 -2.39 -0.01 3.37 16 44 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 Total: -1.00 -72.86 372.75 1.78 -71.08 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 1.04 Total: 27.83 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.18 Total: 5.62 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -6.09 Total: -113.55 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.06 Total: -34.83 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.32 Total: 0.69 kcal Total: -72.86 1.78 -71.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014324813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.753 kcal (2) G-P(sol) polarization free energy of solvation -72.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds