Wall clock time and date at job start Tue Mar 31 2020 06:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34223 * 125.74580 * 2 1 4 4 C 1.38120 * 107.40653 * 179.97438 * 3 2 1 5 5 C 1.47290 * 126.42686 * 179.97438 * 4 3 2 6 6 O 1.21533 * 119.99662 * 359.97438 * 5 4 3 7 7 O 1.34745 * 120.00294 * 179.97438 * 5 4 3 8 8 C 1.45203 * 117.00380 * 179.97438 * 7 5 4 9 9 C 1.50691 * 109.47466 * 180.02562 * 8 7 5 10 10 O 1.21398 * 120.00150 * 359.97438 * 9 8 7 11 11 C 1.41733 * 120.00205 * 180.02562 * 9 8 7 12 12 C 1.37862 * 126.91018 * 0.02562 * 11 9 8 13 13 N 1.34666 * 109.62237 * 179.97438 * 12 11 9 14 14 C 1.46499 * 124.64683 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46980 * 264.95484 * 14 13 12 16 16 H 1.07998 * 119.99626 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99870 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99692 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00344 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46870 * 89.99833 * 19 17 15 21 21 H 1.48499 * 109.47370 * 210.00091 * 19 17 15 22 22 H 1.48502 * 109.47042 * 330.00220 * 19 17 15 23 23 C 1.38023 * 110.70753 * 359.97438 * 13 12 11 24 24 C 1.39142 * 133.03684 * 179.97438 * 23 13 12 25 25 C 1.37777 * 119.94271 * 180.02562 * 24 23 13 26 26 C 1.38718 * 120.64122 * 0.02562 * 25 24 23 27 27 C 1.37805 * 120.26774 * 359.97438 * 26 25 24 28 28 C 1.39191 * 119.66997 * 0.02562 * 27 26 25 29 29 C 1.41336 * 107.15023 * 0.23672 * 4 3 2 30 30 N 1.30432 * 108.01177 * 359.59256 * 29 4 3 31 31 H 1.09002 * 109.46894 * 90.00265 * 1 2 3 32 32 H 1.08997 * 109.47290 * 210.00517 * 1 2 3 33 33 H 1.08999 * 109.47174 * 330.00669 * 1 2 3 34 34 H 1.08001 * 126.29647 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.46779 * 59.99774 * 8 7 5 36 36 H 1.09003 * 109.47169 * 300.01022 * 8 7 5 37 37 H 1.08002 * 125.19186 * 359.93331 * 12 11 9 38 38 H 1.08999 * 109.47025 * 24.95556 * 14 13 12 39 39 H 1.08994 * 109.47161 * 144.95658 * 14 13 12 40 40 H 0.97006 * 119.99376 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.02756 * 0.02778 * 24 23 13 42 42 H 1.08002 * 119.67763 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.86821 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.16366 * 179.72179 * 27 26 25 45 45 H 1.08001 * 125.99716 * 179.75726 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0894 0.0000 4 6 3.5602 0.6548 0.0006 5 6 4.7632 1.5045 0.0003 6 8 4.6523 2.7148 -0.0011 7 8 5.9868 0.9401 0.0015 8 6 7.1274 1.8387 0.0005 9 6 8.4012 1.0337 0.0014 10 8 8.3527 -0.1793 0.0032 11 6 9.6560 1.6926 0.0012 12 6 9.8765 3.0535 0.0008 13 7 11.2010 3.2970 0.0013 14 6 11.8022 4.6330 0.0016 15 6 12.1229 5.0398 -1.4136 16 1 11.9014 4.3700 -2.2313 17 6 12.6990 6.2671 -1.6643 18 7 12.9784 6.6223 -2.8994 19 14 13.0828 7.4253 -0.2499 20 1 14.4564 7.1602 0.2482 21 1 12.9897 8.8304 -0.7213 22 1 12.1073 7.2059 0.8481 23 6 11.9145 2.1155 0.0027 24 6 13.2759 1.8283 0.0033 25 6 13.7024 0.5182 0.0043 26 6 12.7864 -0.5235 0.0041 27 6 11.4339 -0.2591 0.0036 28 6 10.9897 1.0600 0.0026 29 6 3.5308 -0.7583 -0.0046 30 7 2.2824 -1.1358 0.0007 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5137 34 1 1.9161 2.1168 -0.0004 35 1 7.0944 2.4685 0.8896 36 1 7.0949 2.4660 -0.8904 37 1 9.1049 3.8091 -0.0005 38 1 11.1015 5.3466 0.4350 39 1 12.7183 4.6190 0.5921 40 1 13.3834 7.4859 -3.0758 41 1 13.9977 2.6317 0.0030 42 1 14.7602 0.3002 0.0051 43 1 13.1345 -1.5459 0.0045 44 1 10.7222 -1.0714 -0.0011 45 1 4.3913 -1.4110 -0.0093 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014702621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:01 Heat of formation + Delta-G solvation = 23.856362 kcal Electronic energy + Delta-G solvation = -30934.930797 eV Core-core repulsion = 26499.456088 eV Total energy + Delta-G solvation = -4435.474709 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73346 -41.15214 -40.08277 -38.39566 -36.76871 -36.17804 -33.87848 -33.61343 -32.12810 -30.92954 -29.97432 -29.95028 -28.34647 -27.80400 -26.85672 -23.89187 -23.17976 -22.68029 -21.70328 -21.40040 -20.51632 -20.38580 -18.86740 -18.23908 -17.32377 -17.04813 -16.62124 -16.58609 -16.20720 -15.90969 -15.73565 -15.19800 -14.91946 -14.79116 -14.62927 -14.32983 -14.14116 -13.78508 -13.52645 -13.45656 -13.29631 -13.17341 -13.06622 -12.72043 -12.65475 -12.51448 -12.20007 -12.11739 -11.67052 -11.47841 -11.29193 -11.07013 -10.87372 -10.70895 -10.52761 -10.51084 -10.26147 -10.00424 -9.82475 -9.35301 -9.15434 -9.12936 -8.94873 -7.85718 -7.25082 -6.42585 -4.49201 1.03864 1.21574 1.79074 1.85894 1.86857 2.23862 2.60540 3.02513 3.02592 3.08246 3.11534 3.35488 3.52450 4.03541 4.06203 4.32100 4.33719 4.38048 4.59843 4.67022 4.77861 4.84543 4.87966 5.01106 5.08089 5.11701 5.17427 5.24063 5.36638 5.40074 5.44272 5.60306 5.86756 5.97139 6.01454 6.06159 6.16752 6.22297 6.25148 6.32411 6.37222 6.50418 6.82659 6.96984 7.06138 7.06763 7.13241 7.20395 7.58862 7.61754 7.74768 8.01914 8.10234 8.61202 9.11175 10.69225 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.002102 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.437449 B =13315.281699 C =15510.648898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.363 5.363 3 C 0.137 3.863 4 C -0.279 4.279 5 C 0.543 3.457 6 O -0.521 6.521 7 O -0.331 6.331 8 C 0.024 3.976 9 C 0.434 3.566 10 O -0.464 6.464 11 C -0.308 4.308 12 C 0.158 3.842 13 N -0.418 5.418 14 C 0.198 3.802 15 C -0.553 4.553 16 H 0.084 0.916 17 C 0.082 3.918 18 N -0.879 5.879 19 Si 0.873 3.127 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.264 1.264 23 C 0.086 3.914 24 C -0.100 4.100 25 C -0.119 4.119 26 C -0.140 4.140 27 C -0.082 4.082 28 C -0.054 4.054 29 C 0.108 3.892 30 N -0.302 5.302 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.193 0.807 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.178 0.822 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.271 0.729 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.126 0.874 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.159 -10.134 8.069 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.141 5.141 3 C -0.015 4.015 4 C -0.292 4.292 5 C 0.388 3.612 6 O -0.411 6.411 7 O -0.246 6.246 8 C -0.051 4.051 9 C 0.315 3.685 10 O -0.342 6.342 11 C -0.317 4.317 12 C 0.016 3.984 13 N -0.092 5.092 14 C 0.079 3.921 15 C -0.591 4.591 16 H 0.102 0.898 17 C -0.123 4.123 18 N -0.515 5.515 19 Si 0.699 3.301 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.018 4.018 24 C -0.120 4.120 25 C -0.138 4.138 26 C -0.158 4.158 27 C -0.101 4.101 28 C -0.057 4.057 29 C -0.080 4.080 30 N -0.121 5.121 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.209 0.791 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.195 0.805 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -18.874 -10.934 7.945 23.215 hybrid contribution 0.863 2.016 0.417 2.232 sum -18.011 -8.918 8.362 21.769 Atomic orbital electron populations 1.22039 0.73094 1.05185 1.04153 1.48481 1.07481 1.03898 1.54265 1.22963 0.89755 0.94011 0.94819 1.19312 0.90898 0.93545 1.25465 1.19973 0.82883 0.86002 0.72304 1.90850 1.87514 1.15150 1.47594 1.86593 1.13932 1.40058 1.84031 1.23482 0.83504 0.93101 1.04965 1.19526 0.87015 0.88845 0.73160 1.90521 1.89295 1.15478 1.38875 1.19284 0.92931 0.92396 1.27074 1.22588 0.86171 0.96006 0.93607 1.44194 1.04733 1.07451 1.52776 1.20317 0.94989 0.76583 1.00222 1.21124 1.43655 1.03768 0.90526 0.89817 1.24826 0.94335 0.97377 0.95801 1.69868 1.40797 1.21896 1.18932 0.86902 0.79679 0.81033 0.82486 1.19577 1.20373 1.18873 1.18291 0.93432 0.84691 1.05422 1.20191 0.92122 0.97164 1.02498 1.20729 0.99238 0.91657 1.02199 1.20884 0.92795 0.98656 1.03508 1.20509 0.95323 0.94700 0.99545 1.18748 0.90840 0.92779 1.03328 1.24354 0.95262 0.93867 0.94507 1.77288 1.01984 1.07397 1.25421 0.89960 0.88632 0.88861 0.79053 0.88118 0.87904 0.80525 0.93058 0.93780 0.91886 0.85742 0.86089 0.86360 0.85582 0.78139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.30 11.44 59.85 0.68 0.98 16 2 N -0.36 -2.89 3.98 -67.59 -0.27 -3.15 16 3 C 0.14 1.15 11.30 -16.55 -0.19 0.96 16 4 C -0.28 -3.12 6.13 -105.08 -0.64 -3.76 16 5 C 0.54 7.28 7.95 34.41 0.27 7.55 16 6 O -0.52 -7.81 16.69 -19.29 -0.32 -8.13 16 7 O -0.33 -4.72 9.60 -47.29 -0.45 -5.18 16 8 C 0.02 0.33 5.23 36.00 0.19 0.52 16 9 C 0.43 7.08 7.03 -32.98 -0.23 6.85 16 10 O -0.46 -8.68 16.14 -14.19 -0.23 -8.91 16 11 C -0.31 -5.34 6.11 -104.87 -0.64 -5.98 16 12 C 0.16 2.64 10.70 -16.45 -0.18 2.46 16 13 N -0.42 -8.11 2.70 -115.29 -0.31 -8.42 16 14 C 0.20 4.12 4.75 -5.19 -0.02 4.10 16 15 C -0.55 -14.07 9.94 -34.44 -0.34 -14.42 16 16 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 17 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.88 -24.75 13.96 55.43 0.77 -23.98 16 19 Si 0.87 18.79 27.47 -169.99 -4.67 14.12 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.26 -5.29 6.54 56.52 0.37 -4.92 16 23 C 0.09 1.67 6.78 -83.95 -0.57 1.10 16 24 C -0.10 -1.79 9.96 -39.41 -0.39 -2.19 16 25 C -0.12 -1.83 10.01 -39.57 -0.40 -2.23 16 26 C -0.14 -2.11 10.03 -39.56 -0.40 -2.51 16 27 C -0.08 -1.41 9.80 -39.39 -0.39 -1.80 16 28 C -0.05 -1.01 6.24 -104.93 -0.65 -1.66 16 29 C 0.11 1.15 11.87 -16.97 -0.20 0.95 16 30 N -0.30 -3.19 12.50 30.87 0.39 -2.80 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.19 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.18 2.29 7.91 -52.49 -0.42 1.87 16 38 H 0.05 1.00 7.16 -51.93 -0.37 0.63 16 39 H 0.04 0.89 7.57 -51.93 -0.39 0.50 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 42 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 44 H 0.13 2.09 7.38 -52.49 -0.39 1.71 16 45 H 0.20 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 401.91 15.07 6.06 6.06 Total: -1.00 -34.50 401.91 -8.62 -43.12 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.38 Total: 4.33 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -4.19 Total: -7.04 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.58 Total: -38.36 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -1.01 Total: -22.22 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.67 Total: 14.12 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.50 -8.62 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014702621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.978 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds