Wall clock time and date at job start Tue Mar 31 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34223 * 125.74580 * 2 1 4 4 C 1.38120 * 107.40653 * 179.97438 * 3 2 1 5 5 C 1.47290 * 126.42686 * 179.97438 * 4 3 2 6 6 O 1.21533 * 119.99662 * 359.97438 * 5 4 3 7 7 O 1.34745 * 120.00294 * 179.97438 * 5 4 3 8 8 C 1.45203 * 117.00380 * 179.97438 * 7 5 4 9 9 C 1.50691 * 109.47466 * 180.02562 * 8 7 5 10 10 O 1.21398 * 120.00150 * 359.97438 * 9 8 7 11 11 C 1.41733 * 120.00205 * 180.02562 * 9 8 7 12 12 C 1.37862 * 126.91018 * 0.02562 * 11 9 8 13 13 N 1.34666 * 109.62237 * 179.97438 * 12 11 9 14 14 C 1.46499 * 124.64683 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46980 * 264.95484 * 14 13 12 16 16 H 1.07998 * 119.99626 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99870 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99692 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00344 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46870 * 89.99833 * 19 17 15 21 21 H 1.48499 * 109.47370 * 210.00091 * 19 17 15 22 22 H 1.48502 * 109.47042 * 330.00220 * 19 17 15 23 23 C 1.38023 * 110.70753 * 359.97438 * 13 12 11 24 24 C 1.39142 * 133.03684 * 179.97438 * 23 13 12 25 25 C 1.37777 * 119.94271 * 180.02562 * 24 23 13 26 26 C 1.38718 * 120.64122 * 0.02562 * 25 24 23 27 27 C 1.37805 * 120.26774 * 359.97438 * 26 25 24 28 28 C 1.39191 * 119.66997 * 0.02562 * 27 26 25 29 29 C 1.41336 * 107.15023 * 0.23672 * 4 3 2 30 30 N 1.30432 * 108.01177 * 359.59256 * 29 4 3 31 31 H 1.09002 * 109.46894 * 90.00265 * 1 2 3 32 32 H 1.08997 * 109.47290 * 210.00517 * 1 2 3 33 33 H 1.08999 * 109.47174 * 330.00669 * 1 2 3 34 34 H 1.08001 * 126.29647 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.46779 * 59.99774 * 8 7 5 36 36 H 1.09003 * 109.47169 * 300.01022 * 8 7 5 37 37 H 1.08002 * 125.19186 * 359.93331 * 12 11 9 38 38 H 1.08999 * 109.47025 * 24.95556 * 14 13 12 39 39 H 1.08994 * 109.47161 * 144.95658 * 14 13 12 40 40 H 0.97006 * 119.99376 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.02756 * 0.02778 * 24 23 13 42 42 H 1.08002 * 119.67763 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.86821 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.16366 * 179.72179 * 27 26 25 45 45 H 1.08001 * 125.99716 * 179.75726 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0894 0.0000 4 6 3.5602 0.6548 0.0006 5 6 4.7632 1.5045 0.0003 6 8 4.6523 2.7148 -0.0011 7 8 5.9868 0.9401 0.0015 8 6 7.1274 1.8387 0.0005 9 6 8.4012 1.0337 0.0014 10 8 8.3527 -0.1793 0.0032 11 6 9.6560 1.6926 0.0012 12 6 9.8765 3.0535 0.0008 13 7 11.2010 3.2970 0.0013 14 6 11.8022 4.6330 0.0016 15 6 12.1229 5.0398 -1.4136 16 1 11.9014 4.3700 -2.2313 17 6 12.6990 6.2671 -1.6643 18 7 12.9784 6.6223 -2.8994 19 14 13.0828 7.4253 -0.2499 20 1 14.4564 7.1602 0.2482 21 1 12.9897 8.8304 -0.7213 22 1 12.1073 7.2059 0.8481 23 6 11.9145 2.1155 0.0027 24 6 13.2759 1.8283 0.0033 25 6 13.7024 0.5182 0.0043 26 6 12.7864 -0.5235 0.0041 27 6 11.4339 -0.2591 0.0036 28 6 10.9897 1.0600 0.0026 29 6 3.5308 -0.7583 -0.0046 30 7 2.2824 -1.1358 0.0007 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5137 34 1 1.9161 2.1168 -0.0004 35 1 7.0944 2.4685 0.8896 36 1 7.0949 2.4660 -0.8904 37 1 9.1049 3.8091 -0.0005 38 1 11.1015 5.3466 0.4350 39 1 12.7183 4.6190 0.5921 40 1 13.3834 7.4859 -3.0758 41 1 13.9977 2.6317 0.0030 42 1 14.7602 0.3002 0.0051 43 1 13.1345 -1.5459 0.0045 44 1 10.7222 -1.0714 -0.0011 45 1 4.3913 -1.4110 -0.0093 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014702621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:00 Heat of formation + Delta-G solvation = 5.130118 kcal Electronic energy + Delta-G solvation = -30935.742828 eV Core-core repulsion = 26499.456088 eV Total energy + Delta-G solvation = -4436.286740 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.53451 -42.43524 -41.12781 -39.68726 -38.10406 -37.26675 -35.38716 -34.44842 -33.74384 -31.77428 -31.42362 -31.10950 -29.73497 -28.78661 -27.81210 -25.26747 -24.40155 -23.93263 -22.96161 -22.12299 -21.84962 -21.36793 -20.11523 -19.25309 -19.13432 -18.12051 -17.91390 -17.65539 -17.37610 -16.76053 -16.56871 -16.51803 -16.34841 -16.00689 -15.70491 -15.46960 -15.26898 -15.15516 -14.90250 -14.68227 -14.47232 -14.10850 -13.88673 -13.82989 -13.72249 -13.48827 -13.45607 -13.38862 -13.17412 -12.68145 -12.57835 -12.41872 -12.29815 -11.88187 -11.86747 -11.78328 -11.71641 -11.47981 -10.91559 -10.66439 -10.66171 -10.53322 -9.88656 -9.20386 -8.63519 -8.40943 -6.53504 -0.09885 0.29287 0.54461 0.89296 0.97893 1.24612 1.36447 1.36763 1.46285 1.70233 1.94479 2.12273 2.21103 2.25517 2.92029 3.00522 3.15656 3.52535 3.72895 3.74419 3.76310 3.93200 4.03245 4.11006 4.19270 4.21812 4.22797 4.31528 4.43573 4.52560 4.54794 4.55823 4.56881 4.63272 4.69377 4.72383 4.85258 4.91885 5.16825 5.20355 5.29060 5.38938 5.54049 5.66249 5.72514 5.78930 5.86023 5.94979 6.26150 6.32743 6.40835 6.53468 6.68801 6.79647 7.11657 8.74934 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.002102 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.437449 B =13315.281699 C =15510.648898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.356 5.356 3 C 0.154 3.846 4 C -0.312 4.312 5 C 0.545 3.455 6 O -0.542 6.542 7 O -0.344 6.344 8 C 0.027 3.973 9 C 0.438 3.562 10 O -0.494 6.494 11 C -0.318 4.318 12 C 0.162 3.838 13 N -0.434 5.434 14 C 0.206 3.794 15 C -0.554 4.554 16 H 0.029 0.971 17 C 0.023 3.977 18 N -0.935 5.935 19 Si 0.947 3.053 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.232 1.232 23 C 0.058 3.942 24 C -0.123 4.123 25 C -0.111 4.111 26 C -0.130 4.130 27 C -0.098 4.098 28 C -0.079 4.079 29 C 0.101 3.899 30 N -0.326 5.326 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.224 0.776 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.213 0.787 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.126 0.874 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.539 -9.683 10.098 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.133 5.133 3 C 0.000 4.000 4 C -0.325 4.325 5 C 0.393 3.607 6 O -0.433 6.433 7 O -0.260 6.260 8 C -0.047 4.047 9 C 0.321 3.679 10 O -0.374 6.374 11 C -0.327 4.327 12 C 0.022 3.978 13 N -0.109 5.109 14 C 0.086 3.914 15 C -0.591 4.591 16 H 0.048 0.952 17 C -0.178 4.178 18 N -0.573 5.573 19 Si 0.769 3.231 20 H -0.189 1.189 21 H -0.207 1.207 22 H -0.155 1.155 23 C -0.045 4.045 24 C -0.143 4.143 25 C -0.129 4.129 26 C -0.149 4.149 27 C -0.116 4.116 28 C -0.083 4.083 29 C -0.086 4.086 30 N -0.146 5.146 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.240 0.760 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.230 0.770 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.172 0.828 43 H 0.172 0.828 44 H 0.144 0.856 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -20.297 -10.534 9.989 24.954 hybrid contribution 1.213 1.709 -0.305 2.118 sum -19.084 -8.825 9.684 23.149 Atomic orbital electron populations 1.22494 0.70271 1.07006 1.05684 1.48893 1.08955 1.03035 1.52463 1.23414 0.88778 0.95270 0.92504 1.19399 0.91210 0.93589 1.28274 1.20271 0.82881 0.86029 0.71567 1.90824 1.87634 1.15861 1.49031 1.86587 1.14512 1.40606 1.84266 1.23434 0.82170 0.92554 1.06544 1.19779 0.87766 0.88508 0.71878 1.90502 1.89762 1.16753 1.40384 1.19495 0.93075 0.92836 1.27254 1.23159 0.85941 0.96646 0.92039 1.44153 1.05623 1.06874 1.54219 1.20123 0.96201 0.77881 0.97154 1.21246 1.43252 1.02918 0.91730 0.95232 1.25817 0.93921 0.99331 0.98689 1.70039 1.42658 1.22762 1.21885 0.85732 0.80342 0.77742 0.79330 1.18936 1.20695 1.15452 1.18645 0.94276 0.85036 1.06570 1.20425 0.91688 0.98379 1.03832 1.21136 1.01064 0.90595 1.00148 1.21293 0.91825 1.00398 1.01349 1.20715 0.96508 0.94183 1.00208 1.19139 0.91625 0.93459 1.04058 1.24441 0.95627 0.93993 0.94554 1.77232 1.02178 1.08988 1.26157 0.88523 0.88216 0.85732 0.76008 0.85864 0.86755 0.77001 0.90525 0.92785 0.91827 0.86168 0.82755 0.82813 0.85590 0.77995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 11.44 127.77 1.46 1.75 16 2 N -0.36 -4.96 3.98 -367.74 -1.46 -6.43 16 3 C 0.15 2.29 11.30 84.30 0.95 3.24 16 4 C -0.31 -6.78 6.13 -20.16 -0.12 -6.90 16 5 C 0.55 14.38 7.95 70.20 0.56 14.94 16 6 O -0.54 -15.70 16.69 19.73 0.33 -15.37 16 7 O -0.34 -9.82 9.60 -50.17 -0.48 -10.30 16 8 C 0.03 0.72 5.23 71.23 0.37 1.09 16 9 C 0.44 14.38 7.03 26.55 0.19 14.57 16 10 O -0.49 -18.92 16.14 15.39 0.25 -18.67 16 11 C -0.32 -11.09 6.11 -20.03 -0.12 -11.21 16 12 C 0.16 5.32 10.70 84.17 0.90 6.22 16 13 N -0.43 -16.79 2.70 -518.65 -1.40 -18.19 16 14 C 0.21 8.39 4.75 85.63 0.41 8.79 16 15 C -0.55 -28.80 9.94 25.60 0.25 -28.54 16 16 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 17 C 0.02 1.19 5.47 84.65 0.46 1.65 16 18 N -0.94 -54.39 13.96 21.45 0.30 -54.09 16 19 Si 0.95 37.95 27.47 68.60 1.88 39.84 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 21 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.23 -8.03 6.54 99.48 0.65 -7.38 16 23 C 0.06 2.29 6.78 38.89 0.26 2.56 16 24 C -0.12 -4.43 9.96 22.38 0.22 -4.21 16 25 C -0.11 -3.25 10.01 22.28 0.22 -3.03 16 26 C -0.13 -3.74 10.03 22.28 0.22 -3.51 16 27 C -0.10 -3.35 9.80 22.40 0.22 -3.13 16 28 C -0.08 -3.03 6.24 -20.06 -0.13 -3.16 16 29 C 0.10 2.17 11.87 85.66 1.02 3.18 16 30 N -0.33 -6.67 12.50 -56.25 -0.70 -7.38 16 31 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.12 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.22 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 36 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.21 5.07 7.91 -2.91 -0.02 5.05 16 38 H 0.08 2.75 7.16 -2.39 -0.02 2.73 16 39 H 0.05 2.10 7.57 -2.39 -0.02 2.08 16 40 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 41 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 42 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 43 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 44 H 0.13 4.24 7.38 -2.91 -0.02 4.22 16 45 H 0.20 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -79.12 401.91 7.04 -72.08 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.98 Total: 24.21 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 7.36 Total: -5.69 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -3.27 Total: -86.09 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: 0.10 Total: -44.34 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 1.88 Total: 39.84 kcal Total: -79.12 7.04 -72.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014702621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.211 kcal (2) G-P(sol) polarization free energy of solvation -79.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds