Wall clock time and date at job start Tue Mar 31 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 120.00105 * 2 1 4 4 H 1.48500 * 109.46990 * 269.99703 * 3 2 1 5 5 H 1.48501 * 109.46637 * 29.99784 * 3 2 1 6 6 H 1.48497 * 109.46921 * 149.99850 * 3 2 1 7 7 C 1.38702 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00120 * 179.97438 * 7 2 1 9 9 O 1.34774 * 119.99780 * 0.02562 * 7 2 1 10 10 C 1.35577 * 117.00068 * 185.11711 * 9 7 2 11 11 C 1.39195 * 119.88872 * 354.83719 * 10 9 7 12 12 C 1.37102 * 120.10898 * 179.97438 * 11 10 9 13 13 C 1.40106 * 119.89178 * 359.97438 * 12 11 10 14 14 C 1.46768 * 120.11120 * 179.97438 * 13 12 11 15 15 C 1.35787 * 120.00033 * 149.62935 * 14 13 12 16 16 S 1.77487 * 127.96776 * 352.70294 * 15 14 13 17 17 C 1.77226 * 94.57153 * 179.97438 * 16 15 14 18 18 O 1.21628 * 126.56014 * 180.08292 * 17 16 15 19 19 N 1.33797 * 106.88300 * 0.35179 * 17 16 15 20 20 C 1.40166 * 120.23993 * 179.71529 * 19 17 16 21 21 C 1.38833 * 120.06858 * 112.49685 * 20 19 17 22 22 C 1.38125 * 119.93680 * 179.74517 * 21 20 19 23 23 C 1.38278 * 120.05995 * 0.53433 * 22 21 20 24 24 C 1.38285 * 120.13631 * 359.73935 * 23 22 21 25 25 C 1.38121 * 120.06227 * 359.97438 * 24 23 22 26 26 C 1.32260 * 119.51805 * 359.72994 * 19 17 16 27 27 O 1.21707 * 122.51751 * 179.97438 * 26 19 17 28 28 C 1.40119 * 119.77979 * 0.02562 * 13 12 11 29 29 C 1.37101 * 119.88627 * 0.02562 * 28 13 12 30 30 H 0.96991 * 119.99718 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.94215 * 359.96100 * 11 10 9 32 32 H 1.08000 * 120.05124 * 179.73224 * 12 11 10 33 33 H 1.07998 * 119.99732 * 329.62538 * 14 13 12 34 34 H 1.08006 * 120.03262 * 0.02562 * 21 20 19 35 35 H 1.07989 * 119.97029 * 180.29627 * 22 21 20 36 36 H 1.08001 * 119.93407 * 179.76697 * 23 22 21 37 37 H 1.07997 * 119.96434 * 180.02562 * 24 23 22 38 38 H 1.08003 * 120.02632 * 179.97438 * 25 24 23 39 39 H 1.07997 * 120.05338 * 180.02562 * 28 13 12 40 40 H 1.08004 * 119.94386 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3349 -2.3683 0.0005 10 6 2.0691 -3.5030 0.1088 11 6 3.4592 -3.4326 0.1050 12 6 4.2061 -4.5771 0.2147 13 6 3.5678 -5.8189 0.3315 14 6 4.3626 -7.0471 0.4487 15 6 3.8766 -8.1064 1.1455 16 16 2.4065 -8.1792 2.1373 17 6 2.6290 -9.8768 2.5952 18 8 1.8976 -10.5365 3.3088 19 7 3.7586 -10.2921 2.0107 20 6 4.2063 -11.6075 2.1947 21 6 4.2130 -12.4957 1.1277 22 6 4.6596 -13.7898 1.3108 23 6 5.0895 -14.2042 2.5580 24 6 5.0787 -13.3235 3.6241 25 6 4.6387 -12.0265 3.4457 26 6 4.4498 -9.4523 1.2583 27 8 5.4840 -9.7717 0.7018 28 6 2.1682 -5.8843 0.3348 29 6 1.4302 -4.7343 0.2235 30 1 -0.4849 0.8400 -0.0004 31 1 3.9502 -2.4750 0.0152 32 1 5.2846 -4.5219 0.2073 33 1 5.3340 -7.1084 -0.0194 34 1 3.8735 -12.1737 0.1542 35 1 4.6696 -14.4797 0.4801 36 1 5.4348 -15.2177 2.6998 37 1 5.4154 -13.6500 4.5969 38 1 4.6301 -11.3392 4.2788 39 1 1.6716 -6.8391 0.4250 40 1 0.3513 -4.7836 0.2264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015228220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:29 Heat of formation + Delta-G solvation = 5.100273 kcal Electronic energy + Delta-G solvation = -28056.345455 eV Core-core repulsion = 23894.684447 eV Total energy + Delta-G solvation = -4161.661009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.071 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.13590 -39.46669 -38.96993 -38.75687 -37.15734 -35.89055 -33.64035 -32.57855 -31.33856 -31.05956 -30.66873 -28.48552 -26.01549 -25.12667 -24.91838 -23.02322 -22.54567 -22.14546 -21.00144 -19.73289 -18.77089 -18.35676 -18.16035 -17.32601 -16.98677 -16.66871 -16.01354 -15.71914 -15.13533 -14.94919 -14.90074 -14.70327 -14.46900 -14.25067 -14.06583 -13.95587 -13.80398 -13.68188 -13.09005 -13.07164 -12.74530 -12.21382 -12.04255 -11.95808 -11.71291 -11.66494 -11.41066 -11.27636 -11.04314 -10.74493 -10.69327 -10.57782 -10.47320 -9.96641 -9.70399 -9.31217 -9.19595 -9.08396 -8.58456 -8.32555 -7.27515 -6.83325 -4.35426 0.28327 0.67165 0.87099 1.02622 1.46456 1.61476 2.02730 2.24327 2.51702 2.82041 2.94361 2.96607 3.00668 3.37022 3.68325 4.08279 4.26532 4.54842 4.56830 4.66794 4.75610 4.77890 4.89648 5.02942 5.03420 5.14705 5.29218 5.38367 5.60026 5.61540 5.67488 5.71615 5.88794 5.99267 6.01046 6.11528 6.15781 6.31998 6.44960 6.53127 6.58047 6.71930 6.79248 6.91809 6.99346 7.08377 7.41446 7.44697 7.61652 8.60200 9.24831 10.31978 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.029321 B = 0.001815 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.722119 B =15424.352916 C =15874.432628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.043 3.957 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.391 4.391 8 H 0.101 0.899 9 O -0.150 6.150 10 C 0.171 3.829 11 C -0.242 4.242 12 C -0.019 4.019 13 C -0.225 4.225 14 C 0.131 3.869 15 C -0.298 4.298 16 S 0.012 5.988 17 C 0.512 3.488 18 O -0.440 6.440 19 N -0.529 5.529 20 C 0.113 3.887 21 C -0.094 4.094 22 C -0.110 4.110 23 C -0.110 4.110 24 C -0.110 4.110 25 C -0.097 4.097 26 C 0.564 3.436 27 O -0.479 6.479 28 C -0.035 4.035 29 C -0.192 4.192 30 H 0.278 0.722 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.147 0.853 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.245 -18.895 2.936 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.165 4.165 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.466 4.466 8 H 0.119 0.881 9 O -0.049 6.049 10 C 0.113 3.887 11 C -0.261 4.261 12 C -0.038 4.038 13 C -0.227 4.227 14 C 0.106 3.894 15 C -0.413 4.413 16 S 0.249 5.751 17 C 0.194 3.806 18 O -0.313 6.313 19 N -0.271 5.271 20 C 0.021 3.979 21 C -0.113 4.113 22 C -0.129 4.129 23 C -0.128 4.128 24 C -0.129 4.129 25 C -0.117 4.117 26 C 0.356 3.644 27 O -0.354 6.354 28 C -0.055 4.055 29 C -0.212 4.212 30 H 0.088 0.912 31 H 0.152 0.848 32 H 0.136 0.864 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.926 -18.292 3.359 20.216 hybrid contribution 1.351 -0.057 -0.320 1.389 sum 9.277 -18.349 3.039 20.784 Atomic orbital electron populations 1.70011 1.06259 1.28770 1.42169 1.25482 0.95965 0.99411 0.95676 0.85596 0.79059 0.79124 0.79113 1.19448 1.19865 1.18768 1.21584 0.92314 0.80395 1.52260 0.88147 1.83897 1.35358 1.12014 1.73626 1.19664 0.90371 0.87745 0.90946 1.20979 0.93571 0.99307 1.12268 1.20800 0.98725 0.91025 0.93218 1.18326 0.92970 0.91837 1.19522 1.21919 0.95809 0.88038 0.83656 1.23084 1.03884 0.97829 1.16488 1.86690 1.27995 1.06685 1.53758 1.23016 0.81455 0.94365 0.81727 1.90889 1.45804 1.59771 1.34830 1.44157 1.24144 1.12110 1.46690 1.17674 1.01751 0.83199 0.95241 1.21140 0.98832 0.93153 0.98201 1.21048 0.98829 0.95212 0.97774 1.21286 0.98802 0.99882 0.92796 1.21041 0.99615 0.92695 0.99501 1.21134 0.97521 0.97147 0.95884 1.17617 0.83704 0.85196 0.77884 1.90871 1.21102 1.79321 1.44064 1.20882 0.92383 0.97453 0.94819 1.20020 1.00082 0.89767 1.11289 0.91216 0.84817 0.86417 0.83524 0.85532 0.85067 0.85333 0.85065 0.85554 0.85600 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.33 13.67 55.48 0.76 -21.57 16 2 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 3 Si 0.95 18.32 29.55 -169.99 -5.02 13.29 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.39 -9.69 9.48 30.90 0.29 -9.39 16 8 H 0.10 2.25 5.18 -52.49 -0.27 1.98 16 9 O -0.15 -3.80 9.74 0.74 0.01 -3.80 16 10 C 0.17 3.63 6.66 -38.87 -0.26 3.37 16 11 C -0.24 -4.49 9.12 -39.64 -0.36 -4.86 16 12 C -0.02 -0.29 9.77 -39.29 -0.38 -0.68 16 13 C -0.22 -3.40 5.71 -105.04 -0.60 -4.00 16 14 C 0.13 1.71 9.78 -37.01 -0.36 1.34 16 15 C -0.30 -4.09 6.28 -37.04 -0.23 -4.32 16 16 S 0.01 0.16 19.59 -107.50 -2.11 -1.94 16 17 C 0.51 7.45 8.24 53.62 0.44 7.89 16 18 O -0.44 -7.15 17.51 5.25 0.09 -7.06 16 19 N -0.53 -7.41 2.56 -64.68 -0.17 -7.58 16 20 C 0.11 1.47 4.56 -83.61 -0.38 1.09 16 21 C -0.09 -1.08 9.51 -39.40 -0.37 -1.45 16 22 C -0.11 -0.98 10.04 -39.61 -0.40 -1.38 16 23 C -0.11 -0.88 10.04 -39.55 -0.40 -1.28 16 24 C -0.11 -0.98 10.04 -39.61 -0.40 -1.37 16 25 C -0.10 -1.11 9.66 -39.41 -0.38 -1.49 16 26 C 0.56 8.17 7.48 -13.94 -0.10 8.06 16 27 O -0.48 -7.70 16.94 5.18 0.09 -7.61 16 28 C -0.04 -0.57 8.43 -39.29 -0.33 -0.90 16 29 C -0.19 -3.60 9.95 -39.64 -0.39 -4.00 16 30 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.13 2.44 5.61 -52.49 -0.29 2.15 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.13 1.85 5.60 -45.68 -0.26 1.59 16 40 H 0.13 2.26 8.06 -52.48 -0.42 1.83 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -29.20 370.28 -8.83 -38.03 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -3.34 Total: 5.07 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -4.72 Total: -12.41 kcal Atomic # 7 Polarization: -29.74 SS G_CDS: 0.59 Total: -29.15 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.19 Total: -18.47 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.29 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.11 Total: -1.94 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.20 -8.83 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015228220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.127 kcal (2) G-P(sol) polarization free energy of solvation -29.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds