Wall clock time and date at job start Tue Mar 31 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86804 * 119.99808 * 2 1 4 4 H 1.48500 * 109.46954 * 269.99372 * 3 2 1 5 5 H 1.48498 * 109.47275 * 29.99517 * 3 2 1 6 6 H 1.48501 * 109.46950 * 149.99335 * 3 2 1 7 7 C 1.38631 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99657 * 0.02562 * 7 2 1 9 9 O 1.34809 * 119.99997 * 180.02562 * 7 2 1 10 10 C 1.35780 * 116.99699 * 184.26803 * 9 7 2 11 11 C 1.38916 * 119.99574 * 185.72996 * 10 9 7 12 12 C 1.37991 * 120.00445 * 179.76127 * 11 10 9 13 13 C 1.38941 * 119.99681 * 0.51399 * 12 11 10 14 14 N 1.39910 * 120.00777 * 179.72140 * 13 12 11 15 15 C 1.34776 * 119.99603 * 29.90461 * 14 13 12 16 16 O 1.21705 * 120.00354 * 358.67436 * 15 14 13 17 17 C 1.46671 * 119.99748 * 178.67460 * 15 14 13 18 18 C 1.36738 * 126.85670 * 353.81641 * 17 15 14 19 19 N 1.33309 * 107.83470 * 180.02562 * 18 17 15 20 20 C 1.30882 * 109.73639 * 359.97438 * 19 18 17 21 21 N 1.34730 * 109.14013 * 359.73033 * 20 19 18 22 22 C 1.40191 * 126.50113 * 180.30173 * 21 20 19 23 23 C 1.38845 * 120.03471 * 116.82402 * 22 21 20 24 24 C 1.38109 * 119.94993 * 179.74788 * 23 22 21 25 25 C 1.38485 * 120.04532 * 0.50145 * 24 23 22 26 26 F 1.35095 * 119.95822 * 179.74587 * 25 24 23 27 27 C 1.38488 * 120.08242 * 359.77803 * 25 24 23 28 28 C 1.38108 * 120.04373 * 359.96586 * 27 25 24 29 29 C 1.38946 * 119.99349 * 359.74074 * 13 12 11 30 30 C 1.37999 * 119.99331 * 359.97438 * 29 13 12 31 31 H 0.97001 * 120.00140 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.99553 * 359.97438 * 11 10 9 33 33 H 1.08001 * 120.00671 * 180.25134 * 12 11 10 34 34 H 0.97000 * 120.00184 * 209.90593 * 14 13 12 35 35 H 1.08005 * 126.08023 * 0.02562 * 18 17 15 36 36 H 1.08002 * 125.42915 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.02517 * 359.97438 * 23 22 21 38 38 H 1.08002 * 119.97620 * 180.27396 * 24 23 22 39 39 H 1.07994 * 119.97861 * 179.97438 * 27 25 24 40 40 H 1.07993 * 120.01860 * 180.02562 * 28 27 25 41 41 H 1.07995 * 120.00517 * 179.97438 * 29 13 12 42 42 H 1.07997 * 119.99835 * 179.97438 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4403 0.7002 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1358 0.0005 9 8 3.3570 -1.2005 0.0011 10 6 3.9735 -2.4070 -0.0885 11 6 5.3553 -2.4911 0.0263 12 6 5.9815 -3.7177 -0.0598 13 6 5.2309 -4.8675 -0.2718 14 7 5.8662 -6.1106 -0.3649 15 6 7.0146 -6.3322 0.3048 16 8 7.5117 -5.4434 0.9712 17 6 7.6652 -7.6446 0.2305 18 6 7.1757 -8.7697 -0.3731 19 7 8.0734 -9.7422 -0.2133 20 6 9.1013 -9.2888 0.4581 21 7 8.8991 -7.9896 0.7516 22 6 9.7721 -7.1478 1.4548 23 6 10.3246 -6.0392 0.8274 24 6 11.1804 -5.2082 1.5234 25 6 11.4957 -5.4858 2.8430 26 9 12.3370 -4.6746 3.5206 27 6 10.9501 -6.5943 3.4687 28 6 10.0898 -7.4248 2.7776 29 6 3.8492 -4.7827 -0.3919 30 6 3.2228 -3.5565 -0.2999 31 1 -0.4850 0.8400 -0.0004 32 1 5.9392 -1.5967 0.1862 33 1 7.0555 -3.7836 0.0335 34 1 5.4801 -6.8128 -0.9115 35 1 6.2301 -8.8552 -0.8879 36 1 9.9745 -9.8635 0.7297 37 1 10.0824 -5.8249 -0.2030 38 1 11.6069 -4.3433 1.0371 39 1 11.1974 -6.8094 4.4977 40 1 9.6642 -8.2888 3.2661 41 1 3.2656 -5.6762 -0.5571 42 1 2.1489 -3.4904 -0.3936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015766143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:01 Heat of formation + Delta-G solvation = 31.287330 kcal Electronic energy + Delta-G solvation = -31010.913821 eV Core-core repulsion = 26452.301038 eV Total energy + Delta-G solvation = -4558.612783 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.112 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.34109 -42.86642 -40.10429 -39.38090 -38.77855 -36.65797 -34.60681 -33.99513 -32.38015 -31.79865 -30.68347 -30.36012 -29.43544 -27.99078 -25.37247 -24.15756 -23.77831 -23.21793 -22.42916 -21.84994 -20.99719 -20.17756 -19.09490 -18.12769 -17.92228 -17.47043 -17.13143 -16.87703 -16.49480 -16.02670 -15.64991 -15.37071 -14.87502 -14.84015 -14.63047 -14.47150 -14.17765 -14.09134 -13.87977 -13.80082 -13.70224 -13.59169 -13.25560 -12.92471 -12.81831 -12.37599 -12.31194 -11.92252 -11.75711 -11.70611 -11.01875 -10.94088 -10.75997 -10.47357 -10.22736 -9.97442 -9.69719 -9.65663 -9.40300 -9.15302 -8.98289 -8.80399 -8.35046 -7.10317 -6.45152 -4.10697 0.32075 0.67372 0.96583 1.95264 2.03584 2.10718 2.49096 2.94595 3.09999 3.15975 3.22355 3.24468 3.39390 3.73388 4.10756 4.17268 4.21406 4.27117 4.33782 4.44825 4.62313 4.64670 4.73791 4.86803 4.92962 5.05190 5.18265 5.30347 5.40635 5.46683 5.53338 5.58852 5.65893 5.77729 5.95452 6.01496 6.04459 6.12246 6.20662 6.60095 6.69336 6.72486 6.83929 6.99297 7.17684 7.39525 7.51711 7.53497 7.73521 7.97714 8.12137 8.90008 9.52052 10.62325 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.011636 B = 0.002235 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.655717 B =12525.873809 C =14558.278179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.153 3.847 11 C -0.178 4.178 12 C -0.073 4.073 13 C 0.044 3.956 14 N -0.642 5.642 15 C 0.580 3.420 16 O -0.521 6.521 17 C -0.073 4.073 18 C 0.041 3.959 19 N -0.489 5.489 20 C 0.217 3.783 21 N -0.384 5.384 22 C 0.101 3.899 23 C -0.047 4.047 24 C -0.138 4.138 25 C 0.115 3.885 26 F -0.133 7.133 27 C -0.144 4.144 28 C -0.074 4.074 29 C -0.090 4.090 30 C -0.205 4.205 31 H 0.280 0.720 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.405 0.595 35 H 0.183 0.817 36 H 0.215 0.785 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.115 0.885 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.821 -18.109 1.639 28.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.100 3.900 11 C -0.198 4.198 12 C -0.093 4.093 13 C -0.048 4.048 14 N -0.286 5.286 15 C 0.367 3.633 16 O -0.398 6.398 17 C -0.188 4.188 18 C -0.112 4.112 19 N -0.206 5.206 20 C -0.064 4.064 21 N -0.062 5.062 22 C 0.011 3.989 23 C -0.066 4.066 24 C -0.158 4.158 25 C 0.096 3.904 26 F -0.112 7.112 27 C -0.163 4.163 28 C -0.093 4.093 29 C -0.110 4.110 30 C -0.225 4.225 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.153 0.847 34 H 0.241 0.759 35 H 0.200 0.800 36 H 0.232 0.768 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.133 0.867 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 22.094 -17.800 1.947 28.439 hybrid contribution -0.027 1.165 0.155 1.175 sum 22.068 -16.635 2.103 27.715 Atomic orbital electron populations 1.69651 1.05571 1.28562 1.47821 1.24467 0.95032 0.98880 0.95619 0.86182 0.80394 0.81385 0.78983 1.19867 1.20760 1.18278 1.20757 0.76889 0.96640 1.52190 0.87605 1.83591 1.22598 1.25429 1.80351 1.19180 0.91651 0.85610 0.93556 1.20146 0.91832 0.97682 1.10125 1.20822 0.99965 0.89955 0.98523 1.17263 0.91222 0.83658 1.12704 1.42803 1.23686 1.14584 1.47531 1.16740 0.81333 0.85292 0.79918 1.90845 1.63818 1.44434 1.40657 1.20926 0.89781 0.97881 1.10190 1.22726 0.99989 0.87801 1.00701 1.70208 1.01923 1.30822 1.17664 1.25344 1.00588 0.81307 0.99162 1.42612 1.13388 1.10139 1.40100 1.17542 0.95599 0.94011 0.91759 1.20867 0.93384 0.91934 1.00428 1.21039 1.00318 1.01327 0.93091 1.17787 0.91770 0.90127 0.90721 1.91536 1.68370 1.71513 1.79759 1.20991 0.99296 0.94602 1.01400 1.20904 0.96883 1.00038 0.91507 1.20510 0.91574 0.97614 1.01340 1.21094 1.01222 0.91486 1.08663 0.91004 0.86135 0.84723 0.75946 0.79964 0.76846 0.84567 0.83608 0.83638 0.84219 0.86678 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.05 13.96 55.48 0.77 -24.27 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 21.48 28.62 -169.99 -4.86 16.61 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.39 -10.77 9.91 30.88 0.31 -10.46 16 8 H 0.11 2.97 5.51 -52.49 -0.29 2.68 16 9 O -0.21 -5.59 8.58 0.02 0.00 -5.59 16 10 C 0.15 3.46 6.65 -39.08 -0.26 3.20 16 11 C -0.18 -3.57 9.98 -39.42 -0.39 -3.96 16 12 C -0.07 -1.31 8.71 -39.41 -0.34 -1.65 16 13 C 0.04 0.72 6.38 -83.65 -0.53 0.18 16 14 N -0.64 -8.08 5.34 -11.00 -0.06 -8.14 16 15 C 0.58 7.75 7.61 -12.86 -0.10 7.65 16 16 O -0.52 -8.45 12.01 5.18 0.06 -8.39 16 17 C -0.07 -0.80 6.83 -82.08 -0.56 -1.36 16 18 C 0.04 0.39 11.36 -17.45 -0.20 0.19 16 19 N -0.49 -4.89 11.20 -14.35 -0.16 -5.05 16 20 C 0.22 1.75 12.40 -90.34 -1.12 0.63 16 21 N -0.38 -3.70 2.82 -58.63 -0.17 -3.87 16 22 C 0.10 0.95 4.96 -83.59 -0.41 0.53 16 23 C -0.05 -0.44 8.60 -39.40 -0.34 -0.78 16 24 C -0.14 -1.21 10.02 -39.54 -0.40 -1.60 16 25 C 0.12 1.02 7.30 -39.40 -0.29 0.74 16 26 F -0.13 -1.28 17.26 2.25 0.04 -1.24 16 27 C -0.14 -1.08 10.02 -39.54 -0.40 -1.48 16 28 C -0.07 -0.58 9.88 -39.41 -0.39 -0.96 16 29 C -0.09 -1.52 9.95 -39.41 -0.39 -1.91 16 30 C -0.20 -4.22 9.13 -39.42 -0.36 -4.58 16 31 H 0.28 7.37 8.31 -40.82 -0.34 7.04 16 32 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.14 2.35 5.92 -52.49 -0.31 2.04 16 34 H 0.41 3.64 7.77 -40.82 -0.32 3.33 16 35 H 0.18 1.19 7.49 -52.48 -0.39 0.79 16 36 H 0.22 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.14 2.96 5.70 -52.49 -0.30 2.66 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -33.15 373.36 -8.72 -41.87 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -3.70 Total: 6.40 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -6.27 Total: -13.97 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.39 Total: -41.32 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.06 Total: -13.97 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.86 Total: 16.61 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.15 -8.72 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015766143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.160 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds